Wall clock time and date at job start Tue Mar 31 2020 12:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38567 * 119.96994 * 2 1 4 4 C 1.38819 * 118.07218 * 180.21741 * 3 2 1 5 5 C 1.39719 * 117.89919 * 359.51476 * 4 3 2 6 6 C 1.48154 * 120.18813 * 180.27249 * 5 4 3 7 7 O 1.21519 * 119.99395 * 6.95733 * 6 5 4 8 8 N 1.34772 * 120.00086 * 186.95968 * 6 5 4 9 9 C 1.47512 * 118.75391 * 185.91630 * 8 6 5 10 10 C 1.53953 * 110.81803 * 138.25417 * 9 8 6 11 11 C 1.51532 * 109.72561 * 320.30771 * 10 9 8 12 12 O 1.42153 * 108.76899 * 91.29653 * 11 10 9 13 13 C 1.38016 * 119.43731 * 272.78077 * 12 11 10 14 14 H 1.08999 * 109.46489 * 303.42810 * 13 12 11 15 15 C 1.52990 * 109.47110 * 183.42600 * 13 12 11 16 16 N 1.46508 * 109.46964 * 64.98849 * 15 13 12 17 17 C 1.36932 * 119.99918 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00621 * 359.97438 * 17 16 15 19 19 C 1.38818 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99761 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00226 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47319 * 59.99689 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47166 * 299.99729 * 21 19 17 25 25 C 1.45120 * 118.76031 * 6.18496 * 8 6 5 26 26 N 1.32787 * 119.63420 * 0.24688 * 5 4 3 27 27 N 1.28355 * 122.02524 * 0.02562 * 26 5 4 28 28 H 1.09006 * 109.47076 * 270.27851 * 1 2 3 29 29 H 1.08992 * 109.47138 * 30.27931 * 1 2 3 30 30 H 1.09000 * 109.47308 * 150.27675 * 1 2 3 31 31 H 1.07999 * 120.96315 * 0.02562 * 3 2 1 32 32 H 1.07997 * 121.05253 * 179.78811 * 4 3 2 33 33 H 1.08996 * 109.16786 * 258.77295 * 9 8 6 34 34 H 1.08998 * 109.16584 * 17.97570 * 9 8 6 35 35 H 1.09003 * 109.45676 * 200.17570 * 10 9 8 36 36 H 1.08999 * 109.27560 * 80.32602 * 10 9 8 37 37 H 1.08997 * 109.58858 * 331.50682 * 11 10 9 38 38 H 1.09008 * 109.58437 * 211.07975 * 11 10 9 39 39 H 1.09004 * 109.47392 * 184.98285 * 15 13 12 40 40 H 1.08999 * 109.47365 * 304.99045 * 15 13 12 41 41 H 0.96998 * 119.99431 * 0.02562 * 16 15 13 42 42 H 0.96995 * 120.00179 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.45901 * 29.31311 * 25 8 6 44 44 H 1.08999 * 109.46309 * 149.26752 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0046 5 6 4.1991 -0.1013 0.0014 6 6 5.6767 -0.2094 0.0029 7 8 6.3588 0.7887 0.1264 8 7 6.2644 -1.4147 -0.1327 9 6 7.7300 -1.5090 0.0046 10 6 8.1243 -2.7552 0.8181 11 6 7.1550 -2.9434 1.9675 12 8 6.0938 -3.7859 1.5376 13 6 4.9944 -3.2288 0.9166 14 1 4.5529 -2.4743 1.5678 15 6 3.9628 -4.3214 0.6293 16 7 3.4604 -4.8634 1.8944 17 6 2.5209 -5.8596 1.8874 18 1 2.1499 -6.2454 0.9494 19 6 2.0445 -6.3728 3.0860 20 7 2.4963 -5.9022 4.2291 21 14 0.7634 -7.7321 3.0765 22 1 1.3064 -8.9192 2.3686 23 1 0.4240 -8.1021 4.4740 24 1 -0.4583 -7.2561 2.3794 25 6 5.4320 -2.5697 -0.4140 26 7 3.4496 -1.1974 0.0063 27 7 2.1672 -1.1451 0.0052 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8874 -0.5181 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6745 2.1444 0.0004 32 1 4.1740 2.0607 -0.0083 33 1 8.1793 -1.5675 -0.9868 34 1 8.1000 -0.6182 0.5122 35 1 9.1331 -2.6281 1.2110 36 1 8.0946 -3.6317 0.1709 37 1 6.7540 -1.9759 2.2696 38 1 7.6712 -3.4061 2.8088 39 1 3.1344 -3.8986 0.0608 40 1 4.4298 -5.1194 0.0522 41 1 3.7929 -4.5161 2.7368 42 1 2.1637 -6.2610 5.0667 43 1 4.5494 -2.2542 -0.9705 44 1 5.9970 -3.2888 -1.0070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200453466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:16 Heat of formation + Delta-G solvation = -2.055988 kcal Electronic energy + Delta-G solvation = -28226.756402 eV Core-core repulsion = 24373.469795 eV Total energy + Delta-G solvation = -3853.286607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.57931 -41.20466 -39.76862 -36.74867 -36.42852 -35.25873 -34.28786 -34.05515 -32.71089 -30.26185 -29.58691 -27.76177 -26.87787 -26.00664 -24.69734 -24.15790 -22.77575 -22.32711 -20.98815 -19.27205 -19.19013 -18.47676 -17.71965 -17.59767 -16.94410 -16.82854 -16.58746 -16.44009 -16.09345 -15.76508 -15.09493 -15.07323 -14.86863 -14.72194 -14.57992 -14.21137 -13.88068 -13.72001 -13.55801 -13.43115 -13.23580 -13.13939 -12.74955 -12.68599 -12.47760 -12.18549 -12.07478 -11.89253 -11.76105 -11.52361 -11.31919 -11.14539 -10.89644 -10.75742 -10.68047 -10.51925 -9.73477 -8.91554 -7.87360 -5.15333 -0.65037 -0.25941 1.39915 1.48707 1.53624 1.59241 1.67671 2.47733 2.60219 2.68261 2.78185 3.23896 3.43052 3.46146 3.61055 3.70639 3.81371 3.82892 3.99539 4.04732 4.07611 4.14403 4.32253 4.42063 4.47219 4.55252 4.58282 4.61456 4.71816 4.74497 4.76020 4.86381 4.96598 4.98735 5.03584 5.13149 5.21745 5.27320 5.32573 5.37003 5.53429 6.00973 6.33050 6.71604 6.79650 7.39002 7.52416 8.15379 8.40631 9.36937 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.005050 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.390041 B = 5542.774735 C = 7738.935746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.080 3.920 3 C -0.104 4.104 4 C -0.066 4.066 5 C -0.018 4.018 6 C 0.570 3.430 7 O -0.553 6.553 8 N -0.587 5.587 9 C 0.107 3.893 10 C -0.152 4.152 11 C 0.068 3.932 12 O -0.401 6.401 13 C 0.119 3.881 14 H 0.024 0.976 15 C 0.173 3.827 16 N -0.736 5.736 17 C -0.236 4.236 18 H 0.076 0.924 19 C -0.080 4.080 20 N -0.975 5.975 21 Si 0.976 3.024 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.276 1.276 25 C 0.086 3.914 26 N -0.213 5.213 27 N -0.279 5.279 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.205 0.795 32 H 0.178 0.822 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.114 0.886 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 18.008 -12.562 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.164 4.164 6 C 0.356 3.644 7 O -0.431 6.431 8 N -0.317 5.317 9 C -0.014 4.014 10 C -0.190 4.190 11 C -0.008 4.008 12 O -0.320 6.320 13 C 0.059 3.941 14 H 0.042 0.958 15 C 0.046 3.954 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.094 0.906 19 C -0.272 4.272 20 N -0.626 5.626 21 Si 0.805 3.195 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.202 1.202 25 C -0.039 4.039 26 N -0.058 5.058 27 N -0.122 5.122 28 H 0.110 0.890 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.222 0.778 32 H 0.196 0.804 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.201 0.799 42 H 0.057 0.943 43 H 0.131 0.869 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.816 16.555 -12.582 21.344 hybrid contribution -0.433 0.928 0.776 1.285 sum 4.384 17.483 -11.806 21.547 Atomic orbital electron populations 1.20905 0.84877 1.05656 1.04712 1.23772 1.01034 0.90353 0.91145 1.22790 0.93336 1.01190 0.95943 1.22647 0.96171 0.98239 0.92394 1.22924 0.95984 0.93685 1.03814 1.17949 0.86024 0.83718 0.76749 1.90734 1.64226 1.36365 1.51809 1.47913 1.08736 1.07159 1.67884 1.22198 0.77165 0.99903 1.02094 1.22484 1.00928 0.98047 0.97564 1.22315 0.87475 0.93711 0.97346 1.86355 1.29519 1.38703 1.77441 1.21762 0.85533 0.94228 0.92578 0.95823 1.20652 0.93210 0.92890 0.88648 1.42376 1.48389 1.43674 1.03366 1.19625 1.13786 1.10653 0.92767 0.90568 1.25580 1.03368 1.03272 0.94933 1.69854 1.48647 1.47236 0.96898 0.85165 0.79123 0.79183 0.76026 1.20367 1.22243 1.20179 1.22771 0.95949 0.87344 0.97799 1.73758 1.00064 1.25568 1.06452 1.73227 1.01203 1.26801 1.11012 0.88978 0.86228 0.90557 0.77777 0.80436 0.88951 0.89255 0.86409 0.89919 0.94990 0.88539 0.93500 0.96116 0.79946 0.94252 0.86856 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.19 71.23 0.73 -0.81 16 2 C 0.08 1.76 6.87 42.58 0.29 2.05 16 3 C -0.10 -1.64 9.86 22.49 0.22 -1.42 16 4 C -0.07 -1.36 9.73 22.77 0.22 -1.14 16 5 C -0.02 -0.51 6.59 41.99 0.28 -0.23 16 6 C 0.57 16.76 7.61 86.88 0.66 17.42 16 7 O -0.55 -17.35 15.76 -3.78 -0.06 -17.41 16 8 N -0.59 -16.08 2.18 -820.28 -1.79 -17.87 16 9 C 0.11 2.31 6.16 86.51 0.53 2.84 16 10 C -0.15 -3.19 5.79 30.43 0.18 -3.01 16 11 C 0.07 1.99 6.37 71.50 0.46 2.45 16 12 O -0.40 -15.52 9.38 -117.88 -1.11 -16.62 16 13 C 0.12 4.56 1.82 31.21 0.06 4.62 16 14 H 0.02 1.04 7.04 -2.39 -0.02 1.02 16 15 C 0.17 7.81 5.92 86.37 0.51 8.32 16 16 N -0.74 -41.40 5.54 -343.45 -1.90 -43.30 16 17 C -0.24 -14.11 9.99 84.04 0.84 -13.27 16 18 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 19 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 20 N -0.97 -63.22 13.06 21.65 0.28 -62.93 16 21 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 C 0.09 2.57 4.40 87.25 0.38 2.95 16 26 N -0.21 -6.88 5.43 -48.48 -0.26 -7.14 16 27 N -0.28 -8.86 11.43 -47.53 -0.54 -9.41 16 28 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.12 0.79 8.09 -2.39 -0.02 0.77 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.18 2.88 7.73 -2.91 -0.02 2.86 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.98 7.07 -2.39 -0.02 1.96 16 35 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.78 8.01 -2.39 -0.02 1.76 16 37 H 0.03 1.01 7.41 -2.39 -0.02 0.99 16 38 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 39 H 0.05 2.13 8.02 -2.38 -0.02 2.11 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.37 22.61 7.65 -92.71 -0.71 21.90 16 42 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.11 3.50 5.21 -2.58 -0.01 3.49 16 44 H 0.10 2.54 8.11 -2.39 -0.02 2.52 16 Total: -1.00 -80.47 357.85 2.78 -77.69 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.31 Total: 30.41 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 5.82 Total: 16.39 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -4.22 Total: -140.65 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.17 Total: -34.03 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -80.47 2.78 -77.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200453466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.635 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds