Wall clock time and date at job start Tue Mar 31 2020 12:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48508 * 109.47205 * 240.00390 * 3 2 1 5 5 H 1.48500 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47644 * 120.00384 * 3 2 1 7 7 C 1.37877 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.42896 * 114.00334 * 180.02562 * 12 11 10 14 14 C 1.50190 * 109.26273 * 271.11557 * 13 12 11 15 15 C 1.38351 * 119.01861 * 123.54693 * 14 13 12 16 16 C 1.38217 * 120.40780 * 179.46782 * 15 14 13 17 17 C 1.38407 * 120.15562 * 359.73948 * 16 15 14 18 18 C 1.37716 * 120.07271 * 0.77680 * 17 16 15 19 19 C 1.39175 * 121.18577 * 303.33563 * 14 13 12 20 20 C 1.46470 * 121.60038 * 0.96403 * 19 14 13 21 21 C 1.31382 * 126.40314 * 319.36852 * 20 19 14 22 22 C 1.46460 * 126.39021 * 0.02562 * 21 20 19 23 23 C 1.40244 * 118.95401 * 220.50977 * 22 21 20 24 24 C 1.37721 * 120.12640 * 180.31698 * 23 22 21 25 25 C 1.38398 * 120.06696 * 0.07162 * 24 23 22 26 26 C 1.38205 * 120.16562 * 359.84101 * 25 24 23 27 27 C 1.38339 * 120.41265 * 359.96117 * 26 25 24 28 28 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46797 * 59.99668 * 9 7 2 30 30 H 1.09001 * 109.46951 * 300.00303 * 9 7 2 31 31 H 1.09000 * 109.46937 * 59.99964 * 10 9 7 32 32 H 1.09003 * 109.47116 * 299.99630 * 10 9 7 33 33 H 1.09009 * 109.47154 * 60.00228 * 11 10 9 34 34 H 1.08998 * 109.47826 * 300.00147 * 11 10 9 35 35 H 1.09000 * 109.24901 * 30.54601 * 13 12 11 36 36 H 1.07990 * 119.79652 * 359.44404 * 15 14 13 37 37 H 1.07994 * 119.92231 * 180.02562 * 16 15 14 38 38 H 1.08008 * 119.96466 * 180.47744 * 17 16 15 39 39 H 1.08002 * 119.94077 * 179.57921 * 18 17 16 40 40 H 1.07995 * 116.79192 * 139.38578 * 20 19 14 41 41 H 1.07998 * 116.80179 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.93477 * 0.34718 * 23 22 21 43 43 H 1.08001 * 119.96607 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.91974 * 179.86854 * 25 24 23 45 45 H 1.07996 * 119.79721 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0033 12 8 2.4088 -6.0733 0.0024 13 6 1.7943 -7.3633 0.0034 14 6 1.5579 -7.7985 1.4214 15 6 0.2743 -8.1311 1.8162 16 6 0.0261 -8.5457 3.1111 17 6 1.0633 -8.6366 4.0230 18 6 2.3443 -8.2986 3.6471 19 6 2.6045 -7.8755 2.3355 20 6 3.9754 -7.5173 1.9646 21 6 4.5773 -7.8049 0.8328 22 6 4.0024 -8.5430 -0.2941 23 6 4.8000 -9.4761 -0.9722 24 6 4.2860 -10.1789 -2.0392 25 6 2.9807 -9.9649 -2.4463 26 6 2.1875 -9.0484 -1.7822 27 6 2.6889 -8.3381 -0.7062 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 2.8726 -3.6039 0.8909 32 1 2.8712 -3.6048 -0.8891 33 1 0.8526 -5.0455 -0.8861 34 1 0.8546 -5.0442 0.8939 35 1 0.8390 -7.3067 -0.5185 36 1 -0.5387 -8.0659 1.1084 37 1 -0.9788 -8.8038 3.4108 38 1 0.8670 -8.9684 5.0320 39 1 3.1509 -8.3638 4.3623 40 1 4.5478 -6.9626 2.6934 41 1 5.5960 -7.4634 0.7225 42 1 5.8192 -9.6443 -0.6567 43 1 4.9024 -10.8972 -2.5593 44 1 2.5807 -10.5158 -3.2847 45 1 1.1699 -8.8858 -2.1052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205665343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:17 Heat of formation + Delta-G solvation = 8.543629 kcal Electronic energy + Delta-G solvation = -25895.561926 eV Core-core repulsion = 22421.291465 eV Total energy + Delta-G solvation = -3474.270461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.56882 -38.71721 -37.37223 -34.90711 -33.97773 -32.64628 -31.32760 -31.19827 -30.60072 -29.12850 -26.82302 -25.37741 -23.90517 -23.06505 -22.57724 -22.11247 -20.60162 -20.07645 -19.36520 -16.96641 -16.67635 -16.45303 -16.08164 -15.84312 -15.23623 -15.07994 -14.78922 -14.43269 -14.41965 -14.04765 -13.82518 -13.55750 -13.46062 -12.75001 -12.62388 -12.57764 -12.32569 -12.03552 -11.91740 -11.57050 -11.42859 -11.20202 -11.07067 -10.86617 -10.76227 -10.57636 -10.39253 -10.15206 -9.81364 -9.44732 -9.19752 -9.12526 -8.98813 -8.96875 -8.75504 -8.33045 -8.02983 -5.98540 -4.00605 0.74265 1.12293 1.34724 1.39938 2.59068 3.35442 3.39155 3.42136 3.56117 3.83755 3.99635 4.48271 4.60900 4.71753 4.75143 4.83604 4.86094 4.88395 4.97143 5.01400 5.17786 5.30849 5.34534 5.37348 5.45662 5.47117 5.57247 5.77193 5.81413 5.82275 5.90382 5.94004 6.02067 6.16346 6.22543 6.24996 6.34259 6.37372 6.42819 6.51084 6.66381 6.73213 6.78602 6.82382 6.87790 6.93048 7.12967 7.59173 7.69138 7.81881 8.01167 8.44322 9.05745 9.63150 11.13015 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.003276 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.915739 B = 8545.436583 C = 9601.370025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.061 3.939 12 O -0.364 6.364 13 C 0.170 3.830 14 C -0.091 4.091 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.027 4.027 20 C -0.089 4.089 21 C -0.094 4.094 22 C -0.025 4.025 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.065 4.065 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 -24.447 2.094 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.142 4.142 11 C -0.015 4.015 12 O -0.283 6.283 13 C 0.111 3.889 14 C -0.092 4.092 15 C -0.128 4.128 16 C -0.139 4.139 17 C -0.136 4.136 18 C -0.131 4.131 19 C -0.027 4.027 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.026 4.026 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.126 4.126 27 C -0.065 4.065 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.669 -24.281 2.093 24.815 hybrid contribution 0.051 1.011 0.036 1.013 sum 4.720 -23.270 2.129 23.839 Atomic orbital electron populations 1.69958 1.06062 1.26707 1.50876 1.25020 0.94864 0.99262 0.95318 0.86636 0.79562 0.83011 0.78665 1.20204 1.21292 1.20208 1.21183 0.93077 0.90875 1.50586 0.92614 1.19034 0.93904 0.91049 0.97260 1.21616 0.99579 0.91596 1.01391 1.22856 0.92306 0.87004 0.99329 1.88076 1.33552 1.12024 1.94676 1.19414 0.94880 0.84171 0.90401 1.20391 0.93227 1.00126 0.95407 1.21097 0.95850 0.99244 0.96645 1.21135 0.99138 1.00129 0.93488 1.21030 0.92865 1.00246 0.99491 1.21354 0.97050 0.99625 0.95039 1.18543 0.93034 0.98046 0.93108 1.20648 0.93279 0.98973 0.97826 1.20620 1.00112 0.98384 0.92078 1.18571 0.92712 0.95754 0.95515 1.21353 0.99578 0.96359 0.95854 1.21027 0.95734 0.99848 0.97033 1.21110 0.94354 0.98508 1.00047 1.21048 1.00101 0.96452 0.95004 1.19716 0.93477 0.97462 0.95837 0.92955 0.96545 0.96537 0.92683 0.92655 0.93874 0.93851 0.90890 0.85955 0.85959 0.85973 0.85831 0.86463 0.86481 0.85802 0.85970 0.85927 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.52 16 10 C -0.10 -2.31 5.52 -26.73 -0.15 -2.45 16 11 C 0.06 1.15 5.72 37.16 0.21 1.36 16 12 O -0.36 -6.43 8.30 -35.23 -0.29 -6.72 16 13 C 0.17 2.49 2.40 -29.55 -0.07 2.42 16 14 C -0.09 -1.29 4.93 -104.48 -0.51 -1.81 16 15 C -0.11 -1.37 9.61 -39.55 -0.38 -1.75 16 16 C -0.12 -1.34 10.04 -39.53 -0.40 -1.74 16 17 C -0.12 -1.28 10.03 -39.71 -0.40 -1.68 16 18 C -0.11 -1.33 9.73 -39.02 -0.38 -1.71 16 19 C -0.03 -0.38 5.61 -105.48 -0.59 -0.97 16 20 C -0.09 -1.18 8.43 -38.08 -0.32 -1.50 16 21 C -0.09 -1.22 8.43 -38.09 -0.32 -1.54 16 22 C -0.03 -0.34 5.61 -105.48 -0.59 -0.93 16 23 C -0.11 -1.25 9.73 -39.02 -0.38 -1.63 16 24 C -0.12 -1.17 10.03 -39.71 -0.40 -1.56 16 25 C -0.12 -1.23 10.04 -39.53 -0.40 -1.63 16 26 C -0.11 -1.26 9.61 -39.56 -0.38 -1.64 16 27 C -0.06 -0.89 5.00 -104.51 -0.52 -1.41 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.78 8.08 -51.92 -0.42 0.36 16 34 H 0.04 0.82 8.13 -51.93 -0.42 0.39 16 35 H 0.07 0.98 7.06 -51.93 -0.37 0.61 16 36 H 0.12 1.30 7.87 -52.49 -0.41 0.89 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.12 1.21 7.87 -52.49 -0.41 0.80 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.71 374.55 -12.11 -44.82 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.65 Total: -0.68 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: -6.53 Total: -33.49 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.29 Total: -6.72 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.71 -12.11 -44.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.368 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds