Wall clock time and date at job start Tue Mar 31 2020 12:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00010 * 2 1 4 4 H 1.48508 * 109.47205 * 240.00390 * 3 2 1 5 5 H 1.48500 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47644 * 120.00384 * 3 2 1 7 7 C 1.37877 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46863 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47277 * 179.97438 * 11 10 9 13 13 C 1.42896 * 114.00334 * 180.02562 * 12 11 10 14 14 C 1.50190 * 109.26273 * 271.11557 * 13 12 11 15 15 C 1.38351 * 119.01861 * 123.54693 * 14 13 12 16 16 C 1.38217 * 120.40780 * 179.46782 * 15 14 13 17 17 C 1.38407 * 120.15562 * 359.73948 * 16 15 14 18 18 C 1.37716 * 120.07271 * 0.77680 * 17 16 15 19 19 C 1.39175 * 121.18577 * 303.33563 * 14 13 12 20 20 C 1.46470 * 121.60038 * 0.96403 * 19 14 13 21 21 C 1.31382 * 126.40314 * 319.36852 * 20 19 14 22 22 C 1.46460 * 126.39021 * 0.02562 * 21 20 19 23 23 C 1.40244 * 118.95401 * 220.50977 * 22 21 20 24 24 C 1.37721 * 120.12640 * 180.31698 * 23 22 21 25 25 C 1.38398 * 120.06696 * 0.07162 * 24 23 22 26 26 C 1.38205 * 120.16562 * 359.84101 * 25 24 23 27 27 C 1.38339 * 120.41265 * 359.96117 * 26 25 24 28 28 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46797 * 59.99668 * 9 7 2 30 30 H 1.09001 * 109.46951 * 300.00303 * 9 7 2 31 31 H 1.09000 * 109.46937 * 59.99964 * 10 9 7 32 32 H 1.09003 * 109.47116 * 299.99630 * 10 9 7 33 33 H 1.09009 * 109.47154 * 60.00228 * 11 10 9 34 34 H 1.08998 * 109.47826 * 300.00147 * 11 10 9 35 35 H 1.09000 * 109.24901 * 30.54601 * 13 12 11 36 36 H 1.07990 * 119.79652 * 359.44404 * 15 14 13 37 37 H 1.07994 * 119.92231 * 180.02562 * 16 15 14 38 38 H 1.08008 * 119.96466 * 180.47744 * 17 16 15 39 39 H 1.08002 * 119.94077 * 179.57921 * 18 17 16 40 40 H 1.07995 * 116.79192 * 139.38578 * 20 19 14 41 41 H 1.07998 * 116.80179 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.93477 * 0.34718 * 23 22 21 43 43 H 1.08001 * 119.96607 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.91974 * 179.86854 * 25 24 23 45 45 H 1.07996 * 119.79721 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0033 12 8 2.4088 -6.0733 0.0024 13 6 1.7943 -7.3633 0.0034 14 6 1.5579 -7.7985 1.4214 15 6 0.2743 -8.1311 1.8162 16 6 0.0261 -8.5457 3.1111 17 6 1.0633 -8.6366 4.0230 18 6 2.3443 -8.2986 3.6471 19 6 2.6045 -7.8755 2.3355 20 6 3.9754 -7.5173 1.9646 21 6 4.5773 -7.8049 0.8328 22 6 4.0024 -8.5430 -0.2941 23 6 4.8000 -9.4761 -0.9722 24 6 4.2860 -10.1789 -2.0392 25 6 2.9807 -9.9649 -2.4463 26 6 2.1875 -9.0484 -1.7822 27 6 2.6889 -8.3381 -0.7062 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8920 31 1 2.8726 -3.6039 0.8909 32 1 2.8712 -3.6048 -0.8891 33 1 0.8526 -5.0455 -0.8861 34 1 0.8546 -5.0442 0.8939 35 1 0.8390 -7.3067 -0.5185 36 1 -0.5387 -8.0659 1.1084 37 1 -0.9788 -8.8038 3.4108 38 1 0.8670 -8.9684 5.0320 39 1 3.1509 -8.3638 4.3623 40 1 4.5478 -6.9626 2.6934 41 1 5.5960 -7.4634 0.7225 42 1 5.8192 -9.6443 -0.6567 43 1 4.9024 -10.8972 -2.5593 44 1 2.5807 -10.5158 -3.2847 45 1 1.1699 -8.8858 -2.1052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205665343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:16 Heat of formation + Delta-G solvation = -5.954770 kcal Electronic energy + Delta-G solvation = -25896.190624 eV Core-core repulsion = 22421.291465 eV Total energy + Delta-G solvation = -3474.899159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52758 -39.56837 -38.65709 -36.05313 -35.67924 -34.07526 -32.91431 -32.19332 -31.46597 -30.04503 -28.66551 -26.53595 -24.89405 -24.71985 -23.63116 -22.99071 -22.09479 -21.42049 -20.27021 -18.60341 -17.93637 -17.57199 -17.38459 -16.82543 -16.49862 -16.41066 -16.04944 -15.81899 -15.41889 -15.19152 -14.79696 -14.70542 -14.41150 -14.29524 -13.82993 -13.78996 -13.52498 -13.46644 -13.17550 -12.96912 -12.78335 -12.51633 -12.38899 -12.20279 -12.13224 -11.93338 -11.77200 -11.62246 -11.52130 -11.24983 -11.07178 -10.57775 -10.55398 -9.92509 -9.86801 -9.64488 -8.94640 -8.22274 -6.33646 -0.16100 0.22027 0.46741 0.51347 1.39289 1.42814 1.50805 1.67092 2.38642 2.57072 2.87300 2.96663 3.10839 3.67405 3.76364 3.84575 3.87665 3.97721 4.05271 4.12781 4.15098 4.20219 4.25576 4.35933 4.48807 4.50485 4.55681 4.61042 4.64034 4.67084 4.88106 4.90275 4.92455 4.99690 5.08802 5.13660 5.14503 5.29700 5.36289 5.45560 5.48994 5.54453 5.55592 5.61391 5.66907 5.74833 5.80074 5.89310 6.04705 6.06577 6.17199 6.30702 6.81236 7.35368 8.89686 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.003276 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.915739 B = 8545.436583 C = 9601.370025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.090 4.090 11 C 0.076 3.924 12 O -0.376 6.376 13 C 0.167 3.833 14 C -0.114 4.114 15 C -0.125 4.125 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.050 4.050 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.051 4.051 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.090 4.090 28 H 0.265 0.735 29 H -0.003 1.003 30 H -0.006 1.006 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 -25.558 2.033 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.128 4.128 11 C -0.001 4.001 12 O -0.295 6.295 13 C 0.110 3.890 14 C -0.114 4.114 15 C -0.143 4.143 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.139 4.139 19 C -0.051 4.051 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.051 4.051 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.090 4.090 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.514 -25.413 2.032 26.084 hybrid contribution -0.230 1.244 0.046 1.265 sum 5.284 -24.170 2.079 24.828 Atomic orbital electron populations 1.70084 1.07759 1.27975 1.51356 1.25979 0.95825 1.03353 0.94506 0.85478 0.78301 0.77915 0.79229 1.19138 1.20519 1.19179 1.21602 0.93518 0.92232 1.51083 0.92329 1.18894 0.94137 0.92476 0.95146 1.21333 0.98497 0.92003 1.00965 1.22484 0.91818 0.86339 0.99429 1.88025 1.33633 1.13015 1.94860 1.19575 0.95250 0.82757 0.91417 1.20477 0.94189 1.01510 0.95242 1.21349 0.95616 0.99550 0.97790 1.21503 1.00586 0.99179 0.92892 1.21431 0.92293 0.99148 1.00786 1.21664 0.98302 0.99241 0.94690 1.18810 0.93217 0.98934 0.94097 1.20836 0.93530 0.99519 0.98372 1.20848 1.00701 0.98280 0.92108 1.18813 0.93105 0.96932 0.96216 1.21654 1.00330 0.95768 0.95938 1.21446 0.95965 0.99633 0.96382 1.21496 0.94367 0.97751 1.00278 1.21295 1.01072 0.96822 0.94699 1.19818 0.93914 0.98284 0.97022 0.92617 0.98492 0.98740 0.93137 0.92855 0.93314 0.94212 0.90462 0.84893 0.83393 0.83055 0.83990 0.85729 0.85399 0.83873 0.82865 0.83115 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.29 9.11 25.60 0.23 -32.05 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.09 -4.12 5.52 30.59 0.17 -3.95 16 11 C 0.08 2.95 5.72 71.98 0.41 3.36 16 12 O -0.38 -13.65 8.30 -148.98 -1.24 -14.89 16 13 C 0.17 5.05 2.40 28.77 0.07 5.12 16 14 C -0.11 -3.29 4.93 -19.77 -0.10 -3.39 16 15 C -0.13 -3.11 9.61 22.29 0.21 -2.89 16 16 C -0.12 -2.59 10.04 22.31 0.22 -2.36 16 17 C -0.12 -2.38 10.03 22.19 0.22 -2.16 16 18 C -0.12 -2.79 9.73 22.63 0.22 -2.57 16 19 C -0.05 -1.41 5.61 -20.42 -0.11 -1.53 16 20 C -0.10 -2.84 8.43 24.01 0.20 -2.64 16 21 C -0.10 -2.68 8.43 24.00 0.20 -2.48 16 22 C -0.05 -1.34 5.61 -20.42 -0.11 -1.45 16 23 C -0.12 -2.46 9.73 22.64 0.22 -2.24 16 24 C -0.12 -2.02 10.03 22.19 0.22 -1.79 16 25 C -0.12 -2.20 10.04 22.30 0.22 -1.97 16 26 C -0.12 -2.74 9.61 22.29 0.21 -2.53 16 27 C -0.09 -2.50 5.00 -19.79 -0.10 -2.60 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 34 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 35 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 36 H 0.13 2.83 7.87 -2.92 -0.02 2.81 16 37 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 41 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 43 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.13 2.57 7.87 -2.91 -0.02 2.55 16 Total: -1.00 -71.39 374.55 5.27 -66.12 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.96 Total: 16.65 kcal Atomic # 6 Polarization: -60.99 SS G_CDS: 3.23 Total: -57.76 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -1.24 Total: -14.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.39 5.27 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.164 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds