Wall clock time and date at job start Tue Mar 31 2020 12:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00462 * 3 2 1 5 5 H 1.48500 * 109.47027 * 30.00101 * 3 2 1 6 6 H 1.48494 * 109.47185 * 150.00078 * 3 2 1 7 7 C 1.37875 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00228 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.47203 * 109.47135 * 150.00218 * 13 12 11 16 16 C 9.40028 * 136.74131 * 168.83729 * 2 1 3 17 17 C 9.30202 * 162.22351 * 137.39937 * 7 1 2 18 18 C 1.39538 * 120.14283 * 58.87167 * 17 16 15 19 19 C 1.37979 * 119.85259 * 179.78489 * 18 17 16 20 20 C 1.38341 * 120.14425 * 0.47041 * 19 18 17 21 21 C 1.38350 * 120.28697 * 359.78200 * 20 19 18 22 22 C 1.37975 * 120.14245 * 359.97438 * 21 20 19 23 23 C 1.50703 * 109.47171 * 270.00168 * 13 12 11 24 24 C 1.38236 * 119.99787 * 324.72807 * 23 13 12 25 25 C 1.38241 * 119.99636 * 179.81278 * 24 23 13 26 26 C 1.38234 * 120.00115 * 0.39672 * 25 24 23 27 27 C 1.38240 * 119.99714 * 359.85290 * 26 25 24 28 28 C 1.38228 * 120.00011 * 145.00451 * 23 13 12 29 29 H 0.97001 * 120.00458 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 31 31 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 32 32 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 33 33 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 34 34 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 35 35 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 36 36 H 1.07992 * 120.07259 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.92244 * 180.25521 * 19 18 17 38 38 H 1.07998 * 119.85611 * 179.76336 * 20 19 18 39 39 H 1.08000 * 119.92978 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.07465 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00216 * 359.97438 * 24 23 13 42 42 H 1.08000 * 119.99857 * 180.22806 * 25 24 23 43 43 H 1.07998 * 120.00030 * 179.84064 * 26 25 24 44 44 H 1.08003 * 119.99655 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00508 * 359.97379 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 8 6.0278 -3.9839 -0.0014 13 6 7.4524 -4.0967 -0.0020 14 1 7.8850 -3.2383 0.5119 15 6 7.8469 -5.3337 0.6914 16 6 8.1610 -6.3201 1.2471 17 6 8.5446 -7.5241 1.9190 18 6 8.2853 -8.7650 1.3358 19 6 8.6617 -9.9219 1.9868 20 6 9.2861 -9.8538 3.2193 21 6 9.5414 -8.6267 3.8053 22 6 9.1746 -7.4623 3.1626 23 6 7.9526 -4.1360 -1.4230 24 6 7.2087 -4.7703 -2.4003 25 6 7.6657 -4.8030 -3.7046 26 6 8.8705 -4.2085 -4.0299 27 6 9.6169 -3.5786 -3.0515 28 6 9.1580 -3.5426 -1.7481 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.6579 -3.1506 -0.8908 33 1 3.6585 -3.1502 0.8892 34 1 5.9148 -2.1227 0.8890 35 1 5.9149 -2.1228 -0.8909 36 1 7.7945 -8.8196 0.3754 37 1 8.4652 -10.8827 1.5346 38 1 9.5753 -10.7623 3.7265 39 1 10.0289 -8.5803 4.7679 40 1 9.3741 -6.5051 3.6212 41 1 6.2693 -5.2381 -2.1454 42 1 7.0828 -5.2954 -4.4689 43 1 9.2288 -4.2362 -5.0484 44 1 10.5584 -3.1144 -3.3056 45 1 9.7412 -3.0505 -0.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:34 Heat of formation + Delta-G solvation = 42.285112 kcal Electronic energy + Delta-G solvation = -24157.671680 eV Core-core repulsion = 20684.864359 eV Total energy + Delta-G solvation = -3472.807321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.74602 -39.38045 -37.75121 -34.62232 -33.75259 -32.32474 -31.41718 -31.26291 -30.95728 -30.23659 -27.51799 -26.06130 -23.25107 -22.94911 -22.80250 -22.48573 -21.49930 -20.21323 -18.52370 -17.28039 -16.89060 -16.74337 -16.27215 -15.79880 -15.63370 -15.26636 -14.89643 -14.63177 -14.19250 -14.09406 -13.77436 -13.74690 -13.46225 -13.40787 -12.88003 -12.66179 -12.49992 -12.30172 -11.81930 -11.75692 -11.62443 -11.49487 -11.18321 -11.13619 -10.94828 -10.69285 -10.31401 -10.03335 -9.87714 -9.70221 -9.44141 -9.28242 -9.20146 -9.01445 -8.95593 -8.69275 -8.53987 -6.03980 -4.02301 0.62522 1.07994 1.18805 1.32322 2.39124 2.64612 3.30505 3.37783 3.40817 3.52511 3.62437 3.85826 4.30088 4.44886 4.62489 4.64089 4.65452 4.77293 4.80466 4.89552 5.03014 5.07609 5.12018 5.22903 5.26499 5.29446 5.39963 5.51314 5.58085 5.65868 5.70462 5.74884 5.82628 5.94836 6.00063 6.10477 6.16561 6.20748 6.32155 6.37757 6.42829 6.50743 6.55053 6.62204 6.85779 6.88081 7.22778 7.34407 7.39600 7.40114 7.78475 8.54345 9.01298 9.57806 11.09463 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.002654 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.701329 B =10546.749064 C =12477.954483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.099 4.099 11 C 0.058 3.942 12 O -0.367 6.367 13 C 0.244 3.756 14 H 0.092 0.908 15 C -0.134 4.134 16 C -0.128 4.128 17 C 0.021 3.979 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.096 4.096 23 C -0.109 4.109 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.107 4.107 29 H 0.263 0.737 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.832 -16.109 0.178 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.137 4.137 11 C -0.018 4.018 12 O -0.287 6.287 13 C 0.187 3.813 14 H 0.110 0.890 15 C -0.134 4.134 16 C -0.128 4.128 17 C 0.021 3.979 18 C -0.112 4.112 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 24.537 -16.139 0.182 29.370 hybrid contribution 0.467 1.198 -0.058 1.287 sum 25.004 -14.942 0.125 29.129 Atomic orbital electron populations 1.69913 1.06281 1.26884 1.51109 1.25029 0.94752 0.99155 0.94591 0.86775 0.80347 0.83635 0.78513 1.20262 1.21349 1.19032 1.21095 0.89241 0.94594 1.50802 0.90883 1.19518 0.97405 0.91502 0.96359 1.21460 0.89485 1.00228 1.02485 1.22963 0.97624 0.81319 0.99844 1.88039 1.17135 1.28827 1.94674 1.17319 0.83772 0.90482 0.89773 0.89027 1.21637 0.99474 0.94959 0.97351 1.19059 1.00017 0.93808 0.99897 1.15880 0.99778 0.88402 0.93857 1.21283 0.98758 0.91135 1.00029 1.21104 0.98974 0.98201 0.95492 1.21285 0.98461 0.97900 0.95539 1.21096 1.00416 0.92179 1.00144 1.21270 0.97417 0.99048 0.93704 1.20153 0.95821 0.99856 0.95144 1.21082 0.99600 0.97116 0.92380 1.21202 0.96418 1.00032 0.96444 1.21194 0.95101 0.97896 0.99282 1.21074 1.00056 1.00173 0.93003 1.20985 0.95409 0.99343 0.96812 0.92716 0.96509 0.96911 0.91868 0.91859 0.93376 0.93287 0.85462 0.85476 0.85761 0.85506 0.85525 0.85138 0.85844 0.86122 0.86010 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -2.03 5.52 -26.73 -0.15 -2.18 16 11 C 0.06 0.99 5.74 37.16 0.21 1.20 16 12 O -0.37 -6.07 9.11 -35.23 -0.32 -6.39 16 13 C 0.24 3.38 2.77 -30.67 -0.08 3.29 16 14 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 15 C -0.13 -1.92 12.93 -37.11 -0.48 -2.40 16 16 C -0.13 -1.75 13.24 -38.86 -0.51 -2.26 16 17 C 0.02 0.24 5.72 -107.03 -0.61 -0.37 16 18 C -0.09 -0.96 9.75 -39.19 -0.38 -1.34 16 19 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 20 C -0.11 -0.85 10.04 -39.50 -0.40 -1.24 16 21 C -0.12 -0.96 10.03 -39.64 -0.40 -1.35 16 22 C -0.10 -0.95 9.75 -39.19 -0.38 -1.33 16 23 C -0.11 -1.43 4.91 -104.62 -0.51 -1.94 16 24 C -0.08 -1.10 9.35 -39.58 -0.37 -1.47 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 27 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.11 -1.20 9.68 -39.59 -0.38 -1.59 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.80 7.64 -52.49 -0.40 1.39 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -32.92 391.50 -11.55 -44.47 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.65 Total: -0.48 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -6.59 Total: -33.28 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.77 Total: -27.34 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.32 Total: -6.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.92 -11.55 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.755 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds