Wall clock time and date at job start Tue Mar 31 2020 12:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47137 * 270.00462 * 3 2 1 5 5 H 1.48500 * 109.47027 * 30.00101 * 3 2 1 6 6 H 1.48494 * 109.47185 * 150.00078 * 3 2 1 7 7 C 1.37875 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00228 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47433 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47312 * 180.02562 * 11 10 9 13 13 C 1.42898 * 113.99874 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47259 * 30.00319 * 13 12 11 15 15 C 1.47203 * 109.47135 * 150.00218 * 13 12 11 16 16 C 9.40028 * 136.74131 * 168.83729 * 2 1 3 17 17 C 9.30202 * 162.22351 * 137.39937 * 7 1 2 18 18 C 1.39538 * 120.14283 * 58.87167 * 17 16 15 19 19 C 1.37979 * 119.85259 * 179.78489 * 18 17 16 20 20 C 1.38341 * 120.14425 * 0.47041 * 19 18 17 21 21 C 1.38350 * 120.28697 * 359.78200 * 20 19 18 22 22 C 1.37975 * 120.14245 * 359.97438 * 21 20 19 23 23 C 1.50703 * 109.47171 * 270.00168 * 13 12 11 24 24 C 1.38236 * 119.99787 * 324.72807 * 23 13 12 25 25 C 1.38241 * 119.99636 * 179.81278 * 24 23 13 26 26 C 1.38234 * 120.00115 * 0.39672 * 25 24 23 27 27 C 1.38240 * 119.99714 * 359.85290 * 26 25 24 28 28 C 1.38228 * 120.00011 * 145.00451 * 23 13 12 29 29 H 0.97001 * 120.00458 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47305 * 60.00332 * 9 7 2 31 31 H 1.09004 * 109.47662 * 300.00216 * 9 7 2 32 32 H 1.09004 * 109.47141 * 60.00427 * 10 9 7 33 33 H 1.08997 * 109.47333 * 300.00551 * 10 9 7 34 34 H 1.09002 * 109.47156 * 59.99935 * 11 10 9 35 35 H 1.08997 * 109.47257 * 300.00532 * 11 10 9 36 36 H 1.07992 * 120.07259 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.92244 * 180.25521 * 19 18 17 38 38 H 1.07998 * 119.85611 * 179.76336 * 20 19 18 39 39 H 1.08000 * 119.92978 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.07465 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.00216 * 359.97438 * 24 23 13 42 42 H 1.08000 * 119.99857 * 180.22806 * 25 24 23 43 43 H 1.07998 * 120.00030 * 179.84064 * 26 25 24 44 44 H 1.08003 * 119.99655 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00508 * 359.97379 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 8 6.0278 -3.9839 -0.0014 13 6 7.4524 -4.0967 -0.0020 14 1 7.8850 -3.2383 0.5119 15 6 7.8469 -5.3337 0.6914 16 6 8.1610 -6.3201 1.2471 17 6 8.5446 -7.5241 1.9190 18 6 8.2853 -8.7650 1.3358 19 6 8.6617 -9.9219 1.9868 20 6 9.2861 -9.8538 3.2193 21 6 9.5414 -8.6267 3.8053 22 6 9.1746 -7.4623 3.1626 23 6 7.9526 -4.1360 -1.4230 24 6 7.2087 -4.7703 -2.4003 25 6 7.6657 -4.8030 -3.7046 26 6 8.8705 -4.2085 -4.0299 27 6 9.6169 -3.5786 -3.0515 28 6 9.1580 -3.5426 -1.7481 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6800 -0.8911 32 1 3.6579 -3.1506 -0.8908 33 1 3.6585 -3.1502 0.8892 34 1 5.9148 -2.1227 0.8890 35 1 5.9149 -2.1228 -0.8909 36 1 7.7945 -8.8196 0.3754 37 1 8.4652 -10.8827 1.5346 38 1 9.5753 -10.7623 3.7265 39 1 10.0289 -8.5803 4.7679 40 1 9.3741 -6.5051 3.6212 41 1 6.2693 -5.2381 -2.1454 42 1 7.0828 -5.2954 -4.4689 43 1 9.2288 -4.2362 -5.0484 44 1 10.5584 -3.1144 -3.3056 45 1 9.7412 -3.0505 -0.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:33 Heat of formation + Delta-G solvation = 27.271471 kcal Electronic energy + Delta-G solvation = -24158.322721 eV Core-core repulsion = 20684.864359 eV Total energy + Delta-G solvation = -3473.458361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70139 -40.07281 -38.87188 -36.13676 -35.13108 -33.86717 -32.81167 -31.93099 -31.81170 -31.05915 -29.20031 -27.22488 -24.60099 -24.00578 -23.48340 -23.44201 -22.39410 -22.01933 -19.37373 -18.98273 -18.19333 -17.79712 -17.29768 -16.82017 -16.52817 -16.27811 -16.11022 -15.95136 -15.50099 -14.95743 -14.86623 -14.76504 -14.39317 -14.29036 -14.21590 -14.03100 -13.87279 -13.56861 -13.35013 -12.84111 -12.53877 -12.43520 -12.37598 -12.23278 -12.07218 -11.92636 -11.85648 -11.73464 -11.63935 -11.33330 -11.23521 -10.77678 -10.67235 -9.95802 -9.86322 -9.82155 -9.49461 -8.30230 -6.35686 -0.16374 0.33134 0.40703 0.46643 1.35644 1.36579 1.38949 1.50978 1.71057 2.36252 2.57994 2.77679 2.99952 3.04681 3.26156 3.68089 3.88781 4.00146 4.01958 4.09379 4.12692 4.13813 4.20371 4.26281 4.29338 4.38859 4.49615 4.51099 4.58244 4.59941 4.63561 4.76903 4.82776 4.97991 5.00402 5.02544 5.06479 5.11827 5.40515 5.43193 5.48467 5.50373 5.51927 5.52574 5.56901 5.58277 5.62719 5.97302 6.05368 6.12433 6.27468 6.35453 6.72074 7.28622 8.86855 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.002654 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.701329 B =10546.749064 C =12477.954483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.027 0.973 9 C -0.005 4.005 10 C -0.093 4.093 11 C 0.071 3.929 12 O -0.388 6.388 13 C 0.244 3.756 14 H 0.111 0.889 15 C -0.168 4.168 16 C -0.127 4.127 17 C -0.017 4.017 18 C -0.109 4.109 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.109 4.109 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.267 0.733 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.123 0.877 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.568 -15.812 0.445 32.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.043 4.043 10 C -0.131 4.131 11 C -0.005 4.005 12 O -0.308 6.308 13 C 0.187 3.813 14 H 0.128 0.872 15 C -0.168 4.168 16 C -0.127 4.127 17 C -0.017 4.017 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.170 0.830 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 28.291 -15.867 0.449 32.440 hybrid contribution -0.708 0.880 -0.113 1.135 sum 27.583 -14.987 0.335 31.393 Atomic orbital electron populations 1.70078 1.08453 1.28303 1.52466 1.26095 0.95712 1.03816 0.93910 0.85584 0.79607 0.77650 0.79381 1.18952 1.20909 1.16453 1.21447 0.92070 0.93127 1.50816 0.95443 1.19426 0.93968 0.93733 0.97161 1.21259 0.92623 0.97997 1.01222 1.22681 0.94663 0.81993 1.01185 1.87984 1.19425 1.28421 1.94922 1.17476 0.82052 0.90992 0.90740 0.87173 1.21945 1.00966 0.95706 0.98171 1.19718 0.99165 0.94163 0.99659 1.16158 1.02131 0.88158 0.95209 1.21411 0.99376 0.91595 1.00314 1.21433 0.98312 0.98365 0.95813 1.21731 0.96739 0.99002 0.94983 1.21467 0.99714 0.91613 1.01010 1.21454 0.97373 1.00326 0.93184 1.20168 0.96883 1.00938 0.94452 1.21079 0.99498 0.98454 0.93726 1.21428 0.97319 1.00313 0.95931 1.21564 0.94324 0.96835 1.00789 1.21478 1.00939 0.99378 0.92376 1.21264 0.94783 0.99042 0.98056 0.92406 0.95400 0.95633 0.93223 0.93236 0.91641 0.92180 0.85924 0.83050 0.82532 0.82721 0.85051 0.87218 0.84565 0.83354 0.83049 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.96 44.39 27.47 68.60 1.88 46.28 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.54 -32.02 9.66 25.60 0.25 -31.78 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 10 C -0.09 -3.92 5.52 30.59 0.17 -3.75 16 11 C 0.07 2.36 5.74 71.98 0.41 2.77 16 12 O -0.39 -13.17 9.11 -148.98 -1.36 -14.53 16 13 C 0.24 6.85 2.77 28.04 0.08 6.92 16 14 H 0.11 2.56 7.70 -2.39 -0.02 2.54 16 15 C -0.17 -5.00 12.93 31.12 0.40 -4.60 16 16 C -0.13 -3.65 13.24 29.98 0.40 -3.25 16 17 C -0.02 -0.40 5.72 -21.43 -0.12 -0.52 16 18 C -0.11 -2.25 9.75 22.52 0.22 -2.03 16 19 C -0.12 -1.78 10.03 22.23 0.22 -1.56 16 20 C -0.11 -1.29 10.04 22.32 0.22 -1.07 16 21 C -0.12 -1.64 10.03 22.23 0.22 -1.42 16 22 C -0.11 -2.02 9.75 22.52 0.22 -1.80 16 23 C -0.12 -3.24 4.91 -19.87 -0.10 -3.33 16 24 C -0.11 -2.99 9.35 22.27 0.21 -2.78 16 25 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 26 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 27 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 28 C -0.11 -2.37 9.68 22.27 0.22 -2.15 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.09 16 30 H 0.03 1.27 7.20 -2.38 -0.02 1.25 16 31 H 0.03 1.15 7.57 -2.38 -0.02 1.14 16 32 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.11 3.32 7.64 -2.91 -0.02 3.30 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -74.75 391.50 6.01 -68.74 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.91 Total: 16.82 kcal Atomic # 6 Polarization: -60.84 SS G_CDS: 4.27 Total: -56.57 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.36 Total: -14.53 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.28 kcal Total: -74.75 6.01 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.015 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds