Wall clock time and date at job start Tue Mar 31 2020 12:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48492 * 109.47574 * 270.00409 * 3 2 1 5 5 H 1.48507 * 109.46782 * 30.00420 * 3 2 1 6 6 H 1.48502 * 109.46850 * 149.99990 * 3 2 1 7 7 C 1.37874 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46654 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46648 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.47215 * 179.97438 * 11 10 9 13 13 C 1.42893 * 114.00294 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47266 * 330.00383 * 13 12 11 15 15 C 1.47206 * 109.47389 * 210.00130 * 13 12 11 16 16 C 9.40024 * 102.59765 * 172.18992 * 2 1 3 17 17 C 9.30194 * 133.62557 * 163.40658 * 7 1 2 18 18 C 1.39536 * 120.13949 * 293.09993 * 17 16 15 19 19 C 1.37980 * 119.85494 * 179.79017 * 18 17 16 20 20 C 1.38343 * 120.14003 * 0.47536 * 19 18 17 21 21 C 1.38345 * 120.28609 * 359.78005 * 20 19 18 22 22 C 1.37975 * 120.14378 * 359.97438 * 21 20 19 23 23 C 1.50703 * 109.47481 * 90.00131 * 13 12 11 24 24 C 1.38235 * 120.00292 * 220.00139 * 23 13 12 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 13 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97431 * 23 13 12 29 29 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47384 * 60.00701 * 9 7 2 31 31 H 1.09000 * 109.46875 * 299.99758 * 9 7 2 32 32 H 1.08995 * 109.46888 * 60.00109 * 10 9 7 33 33 H 1.08998 * 109.47098 * 299.99905 * 10 9 7 34 34 H 1.09008 * 109.47074 * 60.00246 * 11 10 9 35 35 H 1.08998 * 109.47440 * 299.99874 * 11 10 9 36 36 H 1.08002 * 120.07501 * 0.02638 * 18 17 16 37 37 H 1.07997 * 119.92750 * 180.24887 * 19 18 17 38 38 H 1.07994 * 119.85585 * 179.76378 * 20 19 18 39 39 H 1.07998 * 119.92742 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.07054 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99730 * 359.97438 * 24 23 13 42 42 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00455 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 8 2.4088 -6.0732 -0.0005 13 6 1.7943 -7.3633 -0.0005 14 1 0.8347 -7.3087 0.5136 15 6 2.6685 -8.3234 0.6929 16 6 3.3654 -9.0888 1.2466 17 6 4.2157 -10.0232 1.9184 18 6 3.9312 -10.4140 3.2274 19 6 4.7527 -11.3187 3.8681 20 6 5.8619 -11.8306 3.2189 21 6 6.1525 -11.4432 1.9230 22 6 5.3362 -10.5431 1.2694 23 6 1.5777 -7.8166 -1.4214 24 6 0.4119 -8.4741 -1.7670 25 6 0.2131 -8.8894 -3.0704 26 6 1.1796 -8.6464 -4.0284 27 6 2.3447 -7.9875 -3.6830 28 6 2.5446 -7.5742 -2.3791 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8533 -5.0450 -0.8897 35 1 0.8539 -5.0445 0.8903 36 1 3.0677 -10.0121 3.7366 37 1 4.5313 -11.6250 4.8797 38 1 6.5039 -12.5355 3.7261 39 1 7.0202 -11.8461 1.4219 40 1 5.5644 -10.2411 0.2579 41 1 -0.3435 -8.6634 -1.0187 42 1 -0.6975 -9.4035 -3.3405 43 1 1.0262 -8.9747 -5.0458 44 1 3.1001 -7.7980 -4.4313 45 1 3.4554 -7.0605 -2.1091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:37 Heat of formation + Delta-G solvation = 38.442470 kcal Electronic energy + Delta-G solvation = -24098.558862 eV Core-core repulsion = 20625.584911 eV Total energy + Delta-G solvation = -3472.973950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68472 -39.35997 -37.66729 -34.54678 -33.70730 -32.29717 -31.24374 -31.21113 -30.90368 -30.20115 -27.14430 -25.89006 -23.22902 -23.06856 -22.78507 -22.50270 -21.45748 -20.27305 -18.48693 -17.21951 -16.75997 -16.56229 -16.03275 -15.74846 -15.58363 -15.24151 -14.78599 -14.54376 -14.38819 -14.14996 -13.73780 -13.65638 -13.42234 -13.38638 -12.81935 -12.52762 -12.19744 -12.01933 -11.75052 -11.71171 -11.58217 -11.41814 -11.14427 -11.00788 -10.90932 -10.57003 -10.42005 -10.25236 -9.84347 -9.47420 -9.34328 -9.26390 -9.11824 -8.96445 -8.89718 -8.67158 -8.35101 -6.00407 -4.02522 0.65033 1.09833 1.23613 1.37145 2.46083 2.66796 3.33016 3.38913 3.42894 3.56259 3.66876 3.90185 4.36619 4.49002 4.65706 4.65848 4.69863 4.80074 4.84701 4.94362 5.07909 5.09979 5.17328 5.27101 5.29020 5.35690 5.44913 5.55931 5.70381 5.72296 5.74763 5.82560 5.87401 5.99643 6.12610 6.16547 6.18256 6.23126 6.37401 6.45501 6.48359 6.64187 6.67405 6.71666 6.92712 7.08196 7.38259 7.45934 7.66026 7.78476 7.99062 8.41753 9.03970 9.61481 11.11137 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.002573 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.197274 B =10880.764419 C =13001.673216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.061 3.939 12 O -0.369 6.369 13 C 0.243 3.757 14 H 0.092 0.908 15 C -0.131 4.131 16 C -0.131 4.131 17 C 0.022 3.978 18 C -0.096 4.096 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.108 4.108 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.083 4.083 29 H 0.261 0.739 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 -26.737 0.178 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.015 4.015 12 O -0.289 6.289 13 C 0.185 3.815 14 H 0.110 0.890 15 C -0.131 4.131 16 C -0.131 4.131 17 C 0.022 3.978 18 C -0.114 4.114 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.102 4.102 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.902 -26.575 0.185 27.223 hybrid contribution 0.081 0.975 -0.053 0.979 sum 5.983 -25.601 0.132 26.291 Atomic orbital electron populations 1.69965 1.06058 1.26638 1.50892 1.25025 0.94874 0.99304 0.95305 0.86568 0.79855 0.83326 0.78119 1.20640 1.21217 1.19826 1.21209 0.93126 0.90822 1.50547 0.92533 1.19046 0.93882 0.90982 0.97375 1.21659 0.99696 0.91428 1.01615 1.22954 0.92192 0.86462 0.99892 1.88036 1.34175 1.11985 1.94687 1.17335 0.92763 0.81642 0.89711 0.89020 1.21654 0.97736 0.96442 0.97304 1.19015 0.96974 0.97088 1.00015 1.15872 0.93654 0.95155 0.93128 1.21282 0.99739 0.97010 0.93388 1.21097 0.95170 0.97390 1.00161 1.21278 0.97248 0.99708 0.95003 1.21097 0.99681 0.97879 0.95151 1.21275 0.93552 0.96348 1.00101 1.20151 0.95268 1.00186 0.95252 1.21009 0.96642 0.98066 0.96748 1.21075 0.99333 1.00739 0.93120 1.21184 0.94138 0.98829 0.99323 1.21185 0.97803 0.98873 0.96318 1.21054 0.99048 0.97498 0.92551 0.92986 0.96422 0.96450 0.92502 0.92483 0.93279 0.93368 0.85484 0.85507 0.85787 0.85519 0.85508 0.85951 0.85984 0.86141 0.85921 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.29 5.52 -26.73 -0.15 -2.44 16 11 C 0.06 1.10 5.74 37.16 0.21 1.31 16 12 O -0.37 -6.39 9.27 -35.23 -0.33 -6.71 16 13 C 0.24 3.52 2.76 -30.67 -0.08 3.43 16 14 H 0.09 1.17 7.65 -51.93 -0.40 0.77 16 15 C -0.13 -1.93 12.91 -37.12 -0.48 -2.41 16 16 C -0.13 -1.83 13.23 -38.88 -0.51 -2.35 16 17 C 0.02 0.26 5.72 -107.05 -0.61 -0.35 16 18 C -0.10 -0.97 9.75 -39.19 -0.38 -1.35 16 19 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 20 C -0.11 -0.87 10.04 -39.50 -0.40 -1.26 16 21 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 22 C -0.09 -0.98 9.75 -39.20 -0.38 -1.36 16 23 C -0.11 -1.47 4.89 -104.62 -0.51 -1.99 16 24 C -0.11 -1.26 9.67 -39.59 -0.38 -1.64 16 25 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 28 C -0.08 -1.14 9.34 -39.58 -0.37 -1.51 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.81 7.78 -52.49 -0.41 1.40 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -32.42 395.27 -11.93 -44.35 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.69 Total: -1.03 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -6.59 Total: -33.09 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.33 Total: -6.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.42 -11.93 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.796 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds