Wall clock time and date at job start Tue Mar 31 2020 12:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48492 * 109.47574 * 270.00409 * 3 2 1 5 5 H 1.48507 * 109.46782 * 30.00420 * 3 2 1 6 6 H 1.48502 * 109.46850 * 149.99990 * 3 2 1 7 7 C 1.37874 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99571 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46654 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46648 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.47215 * 179.97438 * 11 10 9 13 13 C 1.42893 * 114.00294 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47266 * 330.00383 * 13 12 11 15 15 C 1.47206 * 109.47389 * 210.00130 * 13 12 11 16 16 C 9.40024 * 102.59765 * 172.18992 * 2 1 3 17 17 C 9.30194 * 133.62557 * 163.40658 * 7 1 2 18 18 C 1.39536 * 120.13949 * 293.09993 * 17 16 15 19 19 C 1.37980 * 119.85494 * 179.79017 * 18 17 16 20 20 C 1.38343 * 120.14003 * 0.47536 * 19 18 17 21 21 C 1.38345 * 120.28609 * 359.78005 * 20 19 18 22 22 C 1.37975 * 120.14378 * 359.97438 * 21 20 19 23 23 C 1.50703 * 109.47481 * 90.00131 * 13 12 11 24 24 C 1.38235 * 120.00292 * 220.00139 * 23 13 12 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 13 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97431 * 23 13 12 29 29 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47384 * 60.00701 * 9 7 2 31 31 H 1.09000 * 109.46875 * 299.99758 * 9 7 2 32 32 H 1.08995 * 109.46888 * 60.00109 * 10 9 7 33 33 H 1.08998 * 109.47098 * 299.99905 * 10 9 7 34 34 H 1.09008 * 109.47074 * 60.00246 * 11 10 9 35 35 H 1.08998 * 109.47440 * 299.99874 * 11 10 9 36 36 H 1.08002 * 120.07501 * 0.02638 * 18 17 16 37 37 H 1.07997 * 119.92750 * 180.24887 * 19 18 17 38 38 H 1.07994 * 119.85585 * 179.76378 * 20 19 18 39 39 H 1.07998 * 119.92742 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.07054 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99730 * 359.97438 * 24 23 13 42 42 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 44 44 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00455 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 8 2.4088 -6.0732 -0.0005 13 6 1.7943 -7.3633 -0.0005 14 1 0.8347 -7.3087 0.5136 15 6 2.6685 -8.3234 0.6929 16 6 3.3654 -9.0888 1.2466 17 6 4.2157 -10.0232 1.9184 18 6 3.9312 -10.4140 3.2274 19 6 4.7527 -11.3187 3.8681 20 6 5.8619 -11.8306 3.2189 21 6 6.1525 -11.4432 1.9230 22 6 5.3362 -10.5431 1.2694 23 6 1.5777 -7.8166 -1.4214 24 6 0.4119 -8.4741 -1.7670 25 6 0.2131 -8.8894 -3.0704 26 6 1.1796 -8.6464 -4.0284 27 6 2.3447 -7.9875 -3.6830 28 6 2.5446 -7.5742 -2.3791 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8533 -5.0450 -0.8897 35 1 0.8539 -5.0445 0.8903 36 1 3.0677 -10.0121 3.7366 37 1 4.5313 -11.6250 4.8797 38 1 6.5039 -12.5355 3.7261 39 1 7.0202 -11.8461 1.4219 40 1 5.5644 -10.2411 0.2579 41 1 -0.3435 -8.6634 -1.0187 42 1 -0.6975 -9.4035 -3.3405 43 1 1.0262 -8.9747 -5.0458 44 1 3.1001 -7.7980 -4.4313 45 1 3.4554 -7.0605 -2.1091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:36 Heat of formation + Delta-G solvation = 24.783407 kcal Electronic energy + Delta-G solvation = -24099.151163 eV Core-core repulsion = 20625.584911 eV Total energy + Delta-G solvation = -3473.566252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70174 -40.07297 -38.87209 -36.12968 -35.15776 -33.73943 -32.70389 -31.92809 -31.82259 -31.05899 -28.83891 -27.20160 -24.89106 -24.01367 -23.49324 -23.45348 -22.40461 -22.12358 -19.36432 -18.63008 -18.16712 -17.75920 -17.27137 -16.83792 -16.54103 -16.46842 -16.08943 -15.94478 -15.54680 -14.93747 -14.82504 -14.45303 -14.38815 -14.27559 -14.21497 -13.91832 -13.80555 -13.52044 -13.31188 -12.83811 -12.51337 -12.46994 -12.37343 -12.35015 -12.22549 -12.03026 -11.87071 -11.77116 -11.52374 -11.25009 -11.22505 -10.68452 -10.57214 -9.95456 -9.86881 -9.82362 -9.50228 -8.22330 -6.33245 -0.16425 0.32399 0.41052 0.46143 1.38287 1.39789 1.41036 1.52379 1.68579 2.39304 2.58005 2.77148 3.00111 3.11001 3.28385 3.67403 3.87407 4.00472 4.02283 4.09108 4.12521 4.14190 4.20572 4.26002 4.29239 4.38861 4.49913 4.54309 4.58360 4.60223 4.64783 4.87473 4.88419 4.97769 5.02127 5.06851 5.11274 5.13437 5.43324 5.46092 5.48843 5.49938 5.52191 5.56291 5.57222 5.67369 5.80676 5.97607 6.04902 6.08092 6.24061 6.34944 6.81820 7.35710 8.89714 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.002573 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.197274 B =10880.764419 C =13001.673216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.095 4.095 11 C 0.074 3.926 12 O -0.385 6.385 13 C 0.243 3.757 14 H 0.105 0.895 15 C -0.168 4.168 16 C -0.125 4.125 17 C -0.017 4.017 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.131 4.131 28 C -0.108 4.108 29 H 0.265 0.735 30 H -0.002 1.002 31 H -0.001 1.001 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.124 0.876 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -28.410 0.287 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.132 4.132 11 C -0.002 4.002 12 O -0.304 6.304 13 C 0.186 3.814 14 H 0.123 0.877 15 C -0.168 4.168 16 C -0.125 4.125 17 C -0.017 4.017 18 C -0.124 4.124 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.149 4.149 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.142 0.858 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.833 -28.266 0.292 29.082 hybrid contribution -0.155 1.337 -0.053 1.347 sum 6.677 -26.929 0.240 27.746 Atomic orbital electron populations 1.70084 1.07691 1.27895 1.51436 1.25968 0.95835 1.03317 0.94592 0.85431 0.78621 0.78337 0.78574 1.19660 1.20455 1.18936 1.21627 0.93507 0.92256 1.50913 0.92393 1.18904 0.94132 0.92284 0.95409 1.21388 0.98672 0.91946 1.01228 1.22617 0.91633 0.85471 1.00454 1.87973 1.34527 1.13040 1.94907 1.17465 0.93044 0.80076 0.90802 0.87721 1.21863 0.98990 0.97732 0.98231 1.19680 0.96443 0.96802 0.99587 1.16147 0.94705 0.96457 0.94354 1.21452 1.00459 0.97678 0.92845 1.21459 0.94744 0.96336 1.01279 1.21732 0.96941 0.99127 0.94593 1.21439 0.99886 0.96917 0.95615 1.21412 0.93666 0.97126 1.00334 1.20167 0.96304 1.01473 0.94595 1.21285 0.96315 0.97768 0.98017 1.21478 1.00325 0.99966 0.92463 1.21575 0.93345 0.97752 1.00804 1.21441 0.98926 0.98729 0.95790 1.21080 0.98865 0.98846 0.93862 0.92627 0.98392 0.98300 0.92829 0.92812 0.93018 0.92490 0.85260 0.82785 0.82484 0.82922 0.85773 0.84269 0.83073 0.83201 0.84267 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.09 -4.23 5.52 30.60 0.17 -4.06 16 11 C 0.07 2.78 5.74 71.98 0.41 3.19 16 12 O -0.38 -13.92 9.27 -148.98 -1.38 -15.31 16 13 C 0.24 7.37 2.76 28.05 0.08 7.45 16 14 H 0.11 2.78 7.65 -2.39 -0.02 2.76 16 15 C -0.17 -5.25 12.91 31.13 0.40 -4.85 16 16 C -0.12 -3.71 13.23 29.99 0.40 -3.31 16 17 C -0.02 -0.41 5.72 -21.44 -0.12 -0.53 16 18 C -0.11 -2.12 9.75 22.52 0.22 -1.90 16 19 C -0.12 -1.70 10.03 22.23 0.22 -1.48 16 20 C -0.11 -1.30 10.04 22.32 0.22 -1.07 16 21 C -0.12 -1.75 10.03 22.23 0.22 -1.53 16 22 C -0.11 -2.21 9.75 22.52 0.22 -1.99 16 23 C -0.13 -3.52 4.89 -19.87 -0.10 -3.61 16 24 C -0.12 -2.68 9.67 22.27 0.22 -2.47 16 25 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 26 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 27 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 28 C -0.11 -3.09 9.34 22.27 0.21 -2.88 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.14 2.62 8.04 -2.91 -0.02 2.59 16 42 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 45 H 0.11 3.42 7.78 -2.91 -0.02 3.39 16 Total: -1.00 -71.72 395.27 6.18 -65.55 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.96 Total: 15.06 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 4.29 Total: -55.54 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.79 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.38 Total: -15.31 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.72 6.18 -65.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.332 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds