Wall clock time and date at job start Tue Mar 31 2020 13:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32210 * 120.51445 * 2 1 4 4 C 1.31910 * 121.14776 * 180.29221 * 3 2 1 5 5 N 1.31758 * 122.18897 * 359.74673 * 4 3 2 6 6 C 1.32740 * 120.87545 * 359.97438 * 5 4 3 7 7 O 1.35276 * 120.61861 * 179.97438 * 6 5 4 8 8 C 1.39766 * 120.50485 * 179.76593 * 2 1 3 9 9 C 1.47535 * 120.98366 * 359.97019 * 8 2 1 10 10 O 1.21593 * 120.00010 * 269.72477 * 9 8 2 11 11 N 1.34773 * 120.00040 * 89.99646 * 9 8 2 12 12 C 1.46931 * 120.63014 * 359.45059 * 11 9 8 13 13 C 1.53622 * 108.54363 * 126.36772 * 12 11 9 14 14 C 1.53031 * 109.24424 * 54.85528 * 13 12 11 15 15 C 1.53004 * 109.46139 * 178.49026 * 14 13 12 16 16 N 1.46498 * 109.47264 * 295.06904 * 15 14 13 17 17 C 1.36935 * 120.00020 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 60.00500 * 21 19 17 23 23 H 1.48499 * 109.46808 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47082 * 299.99938 * 21 19 17 25 25 C 1.53046 * 109.54213 * 298.51109 * 14 13 12 26 26 C 1.46924 * 120.63180 * 179.72610 * 11 9 8 27 27 H 1.08998 * 109.47194 * 270.23810 * 1 2 3 28 28 H 1.09002 * 109.46837 * 30.23750 * 1 2 3 29 29 H 1.09004 * 109.47084 * 150.23308 * 1 2 3 30 30 H 1.07998 * 118.90422 * 179.72694 * 4 3 2 31 31 H 0.96692 * 113.99978 * 270.02005 * 7 6 5 32 32 H 1.08997 * 109.58213 * 246.19974 * 12 11 9 33 33 H 1.09000 * 109.58632 * 6.62336 * 12 11 9 34 34 H 1.09006 * 109.63080 * 294.86331 * 13 12 11 35 35 H 1.08996 * 109.43231 * 174.73094 * 13 12 11 36 36 H 1.09000 * 109.45350 * 58.52801 * 14 13 12 37 37 H 1.09005 * 109.47229 * 55.07026 * 15 14 13 38 38 H 1.08998 * 109.47105 * 175.06808 * 15 14 13 39 39 H 0.96998 * 119.99640 * 0.02562 * 16 15 14 40 40 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.49441 * 301.41830 * 25 14 13 42 42 H 1.08995 * 109.52799 * 181.33647 * 25 14 13 43 43 H 1.08996 * 109.58882 * 353.37166 * 26 11 9 44 44 H 1.09000 * 109.58782 * 113.66155 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1536 -0.0058 5 7 4.2115 0.0463 -0.0068 6 6 3.6233 -1.1436 -0.0016 7 8 4.3617 -2.2771 -0.0032 8 6 2.2165 -1.2042 0.0049 9 6 1.5122 -2.5006 0.0109 10 8 1.2269 -3.0327 1.0663 11 7 1.1900 -3.0978 -1.1536 12 6 1.5226 -2.4644 -2.4369 13 6 2.3126 -3.4702 -3.2879 14 6 1.5067 -4.7647 -3.4166 15 6 2.2722 -5.7566 -4.2947 16 7 2.3751 -5.2254 -5.6561 17 6 3.0235 -5.9443 -6.6244 18 1 3.4587 -6.9033 -6.3847 19 6 3.1206 -5.4412 -7.9146 20 7 2.5897 -4.2728 -8.2069 21 14 4.0045 -6.4223 -9.2357 22 1 3.3310 -7.7340 -9.4120 23 1 3.9697 -5.6714 -10.5164 24 1 5.4158 -6.6411 -8.8289 25 6 1.2906 -5.3733 -2.0291 26 6 0.4940 -4.3917 -1.1638 27 1 -0.3633 0.0043 1.0276 28 1 -0.3633 0.8879 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 4.0088 2.1047 -0.0100 31 1 4.5721 -2.6082 -0.8870 32 1 0.6053 -2.1844 -2.9548 33 1 2.1301 -1.5768 -2.2597 34 1 3.2689 -3.6829 -2.8098 35 1 2.4863 -3.0496 -4.2784 36 1 0.5406 -4.5471 -3.8721 37 1 3.2718 -5.9068 -3.8868 38 1 1.7415 -6.7084 -4.3153 39 1 1.9845 -4.3640 -5.8713 40 1 2.6579 -3.9210 -9.1082 41 1 2.2565 -5.5681 -1.5629 42 1 0.7371 -6.3075 -2.1232 43 1 0.4226 -4.7763 -0.1465 44 1 -0.5064 -4.2653 -1.5778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205998939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:15 Heat of formation + Delta-G solvation = -16.930336 kcal Electronic energy + Delta-G solvation = -27538.034713 eV Core-core repulsion = 23684.103106 eV Total energy + Delta-G solvation = -3853.931607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84352 -40.01951 -38.09272 -37.81828 -35.06493 -34.59025 -33.07851 -32.27037 -31.11851 -30.39610 -29.09896 -26.96826 -25.43045 -23.75691 -23.39058 -23.19984 -21.95966 -20.59084 -19.50272 -19.24978 -18.39851 -17.76282 -17.08319 -16.77532 -16.26259 -15.45104 -15.07836 -14.82063 -14.61238 -14.45395 -14.28053 -13.84340 -13.79560 -13.74107 -13.29004 -13.24111 -13.00175 -12.89609 -12.52804 -12.46140 -12.36182 -11.94176 -11.60911 -11.31176 -11.06705 -10.87376 -10.73975 -10.52437 -10.48009 -10.41450 -10.19079 -10.07870 -9.81034 -9.71503 -9.66132 -8.92686 -8.83459 -6.98199 -5.82736 -3.11144 0.21879 0.50703 2.18578 2.67551 2.89962 3.21004 3.40266 3.45108 3.45695 3.55886 3.84112 4.05830 4.52911 4.54040 4.64175 4.72561 4.84575 4.91536 4.93778 5.03538 5.11718 5.20948 5.23909 5.29747 5.45438 5.48235 5.54157 5.65679 5.77864 5.82109 5.83095 5.96606 6.06652 6.15839 6.25869 6.32282 6.42434 6.49675 6.71166 6.81467 6.95034 7.09764 7.59621 7.64604 7.82600 8.36580 9.47901 10.04975 10.39486 11.40085 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.003143 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.339736 B = 8907.593071 C = 9545.361041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.225 3.775 3 N -0.525 5.525 4 C 0.335 3.665 5 N -0.539 5.539 6 C 0.400 3.600 7 O -0.467 6.467 8 C -0.245 4.245 9 C 0.579 3.421 10 O -0.526 6.526 11 N -0.599 5.599 12 C 0.105 3.895 13 C -0.124 4.124 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.126 4.126 26 C 0.113 3.887 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.207 0.793 31 H 0.414 0.586 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 9.216 16.607 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 N -0.241 5.241 4 C 0.048 3.952 5 N -0.264 5.264 6 C 0.212 3.788 7 O -0.276 6.276 8 C -0.255 4.255 9 C 0.365 3.635 10 O -0.402 6.402 11 N -0.332 5.332 12 C -0.017 4.017 13 C -0.162 4.162 14 C -0.113 4.113 15 C 0.031 3.969 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.165 4.165 26 C -0.009 4.009 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.224 0.776 31 H 0.275 0.725 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.656 9.607 17.658 20.432 hybrid contribution 0.311 -1.070 -1.441 1.821 sum -3.345 8.537 16.217 18.629 Atomic orbital electron populations 1.20914 0.86941 1.04657 1.04544 1.21797 0.97756 0.85957 0.86604 1.68301 1.10239 1.29249 1.16287 1.25009 0.86201 0.96178 0.87813 1.68083 1.42575 0.98641 1.17113 1.19370 0.85473 0.86042 0.87923 1.84664 1.72508 1.35829 1.34566 1.21681 0.95212 0.96842 1.11717 1.17580 0.78517 0.83490 0.83960 1.90813 1.54163 1.64605 1.30640 1.48159 1.57778 1.21702 1.05524 1.21975 1.00479 0.95792 0.83477 1.22013 0.98133 0.95387 1.00658 1.21311 0.99808 0.95339 0.94794 1.20666 0.96221 0.94187 0.85871 1.42358 1.67714 1.23103 1.04468 1.19185 1.27666 1.00885 0.89486 0.91298 1.24719 1.01432 0.97203 0.97480 1.69634 1.50045 1.18628 1.20003 0.86277 0.79494 0.79111 0.81363 1.21260 1.21663 1.21271 1.21923 1.00957 0.98212 0.95384 1.21713 0.95080 0.82075 1.02023 0.88730 0.88794 0.89982 0.77632 0.72465 0.90408 0.91158 0.91945 0.89104 0.90784 0.96412 0.96261 0.78318 0.93455 0.91400 0.90318 0.88957 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.85 36.01 0.35 -0.56 16 2 C 0.23 2.38 6.86 -81.86 -0.56 1.81 16 3 N -0.52 -5.42 10.36 -10.52 -0.11 -5.53 16 4 C 0.34 3.20 12.27 -92.09 -1.13 2.07 16 5 N -0.54 -6.27 10.45 -14.32 -0.15 -6.42 16 6 C 0.40 4.86 7.73 -16.18 -0.13 4.74 16 7 O -0.47 -5.44 13.10 -17.52 -0.23 -5.67 16 8 C -0.25 -2.91 3.66 -104.56 -0.38 -3.30 16 9 C 0.58 7.46 5.40 -12.47 -0.07 7.39 16 10 O -0.53 -8.51 16.52 5.28 0.09 -8.43 16 11 N -0.60 -6.66 2.97 -173.73 -0.52 -7.18 16 12 C 0.11 1.11 6.37 -3.48 -0.02 1.08 16 13 C -0.12 -1.58 5.26 -26.39 -0.14 -1.72 16 14 C -0.09 -1.29 2.19 -90.58 -0.20 -1.49 16 15 C 0.16 2.92 5.65 -4.04 -0.02 2.89 16 16 N -0.73 -17.38 5.32 -59.91 -0.32 -17.70 16 17 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.13 -1.44 5.36 -26.61 -0.14 -1.58 16 26 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 30 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.41 3.20 9.06 45.56 0.41 3.61 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.70 6.24 -51.93 -0.32 0.38 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.38 7.15 -51.93 -0.37 1.00 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 9.43 6.84 -40.82 -0.28 9.15 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.06 7.00 -51.93 -0.36 0.69 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -34.01 364.24 -8.25 -42.26 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.49 Total: 7.44 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.71 Total: 5.41 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.37 Total: -63.36 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.14 Total: -14.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.01 -8.25 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205998939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.325 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds