Wall clock time and date at job start Tue Mar 31 2020 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32210 * 120.51445 * 2 1 4 4 C 1.31910 * 121.14776 * 180.29221 * 3 2 1 5 5 N 1.31758 * 122.18897 * 359.74673 * 4 3 2 6 6 C 1.32740 * 120.87545 * 359.97438 * 5 4 3 7 7 O 1.35276 * 120.61861 * 179.97438 * 6 5 4 8 8 C 1.39766 * 120.50485 * 179.76593 * 2 1 3 9 9 C 1.47535 * 120.98366 * 359.97019 * 8 2 1 10 10 O 1.21593 * 120.00010 * 269.72477 * 9 8 2 11 11 N 1.34773 * 120.00040 * 89.99646 * 9 8 2 12 12 C 1.46931 * 120.63014 * 359.45059 * 11 9 8 13 13 C 1.53622 * 108.54363 * 126.36772 * 12 11 9 14 14 C 1.53031 * 109.24424 * 54.85528 * 13 12 11 15 15 C 1.53004 * 109.46139 * 178.49026 * 14 13 12 16 16 N 1.46498 * 109.47264 * 295.06904 * 15 14 13 17 17 C 1.36935 * 120.00020 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99844 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99900 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46792 * 60.00500 * 21 19 17 23 23 H 1.48499 * 109.46808 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47082 * 299.99938 * 21 19 17 25 25 C 1.53046 * 109.54213 * 298.51109 * 14 13 12 26 26 C 1.46924 * 120.63180 * 179.72610 * 11 9 8 27 27 H 1.08998 * 109.47194 * 270.23810 * 1 2 3 28 28 H 1.09002 * 109.46837 * 30.23750 * 1 2 3 29 29 H 1.09004 * 109.47084 * 150.23308 * 1 2 3 30 30 H 1.07998 * 118.90422 * 179.72694 * 4 3 2 31 31 H 0.96692 * 113.99978 * 270.02005 * 7 6 5 32 32 H 1.08997 * 109.58213 * 246.19974 * 12 11 9 33 33 H 1.09000 * 109.58632 * 6.62336 * 12 11 9 34 34 H 1.09006 * 109.63080 * 294.86331 * 13 12 11 35 35 H 1.08996 * 109.43231 * 174.73094 * 13 12 11 36 36 H 1.09000 * 109.45350 * 58.52801 * 14 13 12 37 37 H 1.09005 * 109.47229 * 55.07026 * 15 14 13 38 38 H 1.08998 * 109.47105 * 175.06808 * 15 14 13 39 39 H 0.96998 * 119.99640 * 0.02562 * 16 15 14 40 40 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.49441 * 301.41830 * 25 14 13 42 42 H 1.08995 * 109.52799 * 181.33647 * 25 14 13 43 43 H 1.08996 * 109.58882 * 353.37166 * 26 11 9 44 44 H 1.09000 * 109.58782 * 113.66155 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1536 -0.0058 5 7 4.2115 0.0463 -0.0068 6 6 3.6233 -1.1436 -0.0016 7 8 4.3617 -2.2771 -0.0032 8 6 2.2165 -1.2042 0.0049 9 6 1.5122 -2.5006 0.0109 10 8 1.2269 -3.0327 1.0663 11 7 1.1900 -3.0978 -1.1536 12 6 1.5226 -2.4644 -2.4369 13 6 2.3126 -3.4702 -3.2879 14 6 1.5067 -4.7647 -3.4166 15 6 2.2722 -5.7566 -4.2947 16 7 2.3751 -5.2254 -5.6561 17 6 3.0235 -5.9443 -6.6244 18 1 3.4587 -6.9033 -6.3847 19 6 3.1206 -5.4412 -7.9146 20 7 2.5897 -4.2728 -8.2069 21 14 4.0045 -6.4223 -9.2357 22 1 3.3310 -7.7340 -9.4120 23 1 3.9697 -5.6714 -10.5164 24 1 5.4158 -6.6411 -8.8289 25 6 1.2906 -5.3733 -2.0291 26 6 0.4940 -4.3917 -1.1638 27 1 -0.3633 0.0043 1.0276 28 1 -0.3633 0.8879 -0.5175 29 1 -0.3633 -0.8921 -0.5102 30 1 4.0088 2.1047 -0.0100 31 1 4.5721 -2.6082 -0.8870 32 1 0.6053 -2.1844 -2.9548 33 1 2.1301 -1.5768 -2.2597 34 1 3.2689 -3.6829 -2.8098 35 1 2.4863 -3.0496 -4.2784 36 1 0.5406 -4.5471 -3.8721 37 1 3.2718 -5.9068 -3.8868 38 1 1.7415 -6.7084 -4.3153 39 1 1.9845 -4.3640 -5.8713 40 1 2.6579 -3.9210 -9.1082 41 1 2.2565 -5.5681 -1.5629 42 1 0.7371 -6.3075 -2.1232 43 1 0.4226 -4.7763 -0.1465 44 1 -0.5064 -4.2653 -1.5778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205998939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:14 Heat of formation + Delta-G solvation = -42.641275 kcal Electronic energy + Delta-G solvation = -27539.149623 eV Core-core repulsion = 23684.103106 eV Total energy + Delta-G solvation = -3855.046517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68159 -40.97959 -38.98200 -38.91214 -36.58477 -35.42417 -34.51727 -33.28886 -32.19751 -31.93629 -29.85241 -28.31161 -26.48244 -25.29375 -24.40432 -24.00596 -23.30443 -21.74736 -20.50830 -20.08534 -19.27515 -19.14728 -18.55919 -17.65383 -17.17866 -16.70499 -16.26907 -15.96716 -15.67362 -15.44375 -15.39202 -15.31298 -15.20351 -14.56757 -14.44207 -14.10740 -13.96673 -13.92806 -13.74588 -13.59032 -13.20034 -13.11348 -12.94083 -12.72650 -12.49307 -12.26652 -12.19904 -11.95372 -11.69477 -11.56607 -11.52544 -11.34154 -11.13200 -10.91068 -10.64577 -10.52232 -9.81302 -8.96544 -7.94263 -5.21518 -0.58876 -0.30531 1.20945 1.48593 1.50149 1.56354 1.76167 2.11090 2.41098 2.56994 2.86239 3.07954 3.17227 3.39617 3.69258 3.71980 3.76155 3.84878 4.00331 4.06848 4.17471 4.26310 4.31892 4.35823 4.51062 4.56239 4.60765 4.69269 4.76228 4.83392 4.87134 4.92983 5.00103 5.10183 5.13559 5.15268 5.23115 5.46542 5.51053 5.54218 5.62164 6.14387 6.21590 6.28855 6.81416 6.85766 7.36081 8.12680 8.36265 9.28701 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.003143 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.339736 B = 8907.593071 C = 9545.361041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.226 3.774 3 N -0.530 5.530 4 C 0.338 3.662 5 N -0.557 5.557 6 C 0.392 3.608 7 O -0.480 6.480 8 C -0.262 4.262 9 C 0.586 3.414 10 O -0.564 6.564 11 N -0.591 5.591 12 C 0.116 3.884 13 C -0.118 4.118 14 C -0.083 4.083 15 C 0.157 3.843 16 N -0.742 5.742 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.280 1.280 25 C -0.116 4.116 26 C 0.114 3.886 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.243 0.757 31 H 0.426 0.574 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.015 0.985 38 H 0.018 0.982 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 9.619 17.069 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 N -0.246 5.246 4 C 0.052 3.948 5 N -0.283 5.283 6 C 0.204 3.796 7 O -0.291 6.291 8 C -0.271 4.271 9 C 0.372 3.628 10 O -0.442 6.442 11 N -0.323 5.323 12 C -0.006 4.006 13 C -0.156 4.156 14 C -0.101 4.101 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.221 1.221 24 H -0.206 1.206 25 C -0.154 4.154 26 C -0.007 4.007 27 H 0.119 0.881 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.259 0.741 31 H 0.290 0.710 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.015 9.983 18.125 21.079 hybrid contribution 0.448 -1.204 -1.545 2.009 sum -3.567 8.779 16.580 19.097 Atomic orbital electron populations 1.20998 0.85316 1.05458 1.05148 1.22196 0.98869 0.85589 0.85428 1.68416 1.10578 1.28935 1.16696 1.25788 0.86196 0.96902 0.85950 1.68157 1.43053 0.98925 1.18126 1.19537 0.85726 0.86341 0.88016 1.84623 1.72587 1.36024 1.35893 1.21645 0.95144 0.96827 1.13508 1.17665 0.77910 0.83600 0.83627 1.90792 1.55843 1.65708 1.31905 1.48157 1.57091 1.21707 1.05311 1.21900 1.00875 0.95148 0.82719 1.21896 0.98576 0.95354 0.99815 1.21183 0.99023 0.94733 0.95204 1.20821 0.96695 0.95242 0.84229 1.42533 1.67237 1.22730 1.05986 1.19567 1.26955 1.01002 0.90361 0.91094 1.25457 1.02899 0.98333 0.99563 1.69775 1.51731 1.20115 1.20022 0.85304 0.78608 0.77838 0.78569 1.20598 1.22122 1.20618 1.21829 1.01164 0.98807 0.93640 1.21759 0.95739 0.81535 1.01685 0.88113 0.87167 0.89936 0.74131 0.70990 0.89042 0.90386 0.91747 0.91536 0.90875 0.96656 0.96390 0.79109 0.94013 0.91841 0.89095 0.89357 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.85 71.24 0.70 -0.89 16 2 C 0.23 4.42 6.86 42.87 0.29 4.71 16 3 N -0.53 -9.97 10.36 -187.21 -1.94 -11.91 16 4 C 0.34 5.82 12.27 180.86 2.22 8.04 16 5 N -0.56 -12.33 10.45 -312.04 -3.26 -15.60 16 6 C 0.39 9.26 7.73 85.19 0.66 9.91 16 7 O -0.48 -11.05 13.10 -85.61 -1.12 -12.18 16 8 C -0.26 -5.97 3.66 -19.82 -0.07 -6.04 16 9 C 0.59 14.52 5.40 86.70 0.47 14.99 16 10 O -0.56 -17.96 16.52 -4.01 -0.07 -18.03 16 11 N -0.59 -12.28 2.97 -821.82 -2.44 -14.72 16 12 C 0.12 2.26 6.37 86.51 0.55 2.81 16 13 C -0.12 -2.93 5.26 30.81 0.16 -2.76 16 14 C -0.08 -2.19 2.19 -10.77 -0.02 -2.21 16 15 C 0.16 5.69 5.65 86.38 0.49 6.18 16 16 N -0.74 -35.29 5.32 -343.44 -1.83 -37.11 16 17 C -0.25 -13.34 9.99 84.04 0.84 -12.50 16 18 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.97 -56.84 13.06 21.65 0.28 -56.55 16 21 Si 0.97 44.96 29.55 68.60 2.03 46.98 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C -0.12 -2.45 5.36 30.68 0.16 -2.29 16 26 C 0.11 2.24 6.43 86.36 0.56 2.79 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.17 7.18 -2.39 -0.02 1.15 16 30 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.43 6.50 9.06 -74.06 -0.67 5.83 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.45 6.24 -2.39 -0.01 1.44 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.38 18.73 6.84 -92.71 -0.63 18.10 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.89 7.00 -2.39 -0.02 1.87 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.41 364.24 -1.13 -73.54 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.26 Total: 26.26 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 7.47 Total: 19.31 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -9.18 Total: -135.89 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.19 Total: -30.21 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -72.41 -1.13 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205998939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds