Wall clock time and date at job start Tue Mar 31 2020 12:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47246 * 300.00066 * 3 2 1 6 6 H 1.48502 * 109.46860 * 60.00134 * 3 2 1 7 7 C 1.38809 * 120.00613 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00223 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47221 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.44874 * 64.93898 * 11 10 9 13 13 C 1.53193 * 109.31257 * 181.37904 * 12 11 10 14 14 N 1.46920 * 108.77821 * 305.36419 * 13 12 11 15 15 C 1.34773 * 120.63207 * 233.59151 * 14 13 12 16 16 O 1.21623 * 119.99830 * 173.20939 * 15 14 13 17 17 C 1.47293 * 120.00373 * 353.19897 * 15 14 13 18 18 C 1.37935 * 125.90187 * 155.79980 * 17 15 14 19 19 C 1.39441 * 107.46193 * 179.88466 * 18 17 15 20 20 C 1.37938 * 107.46189 * 0.38573 * 19 18 17 21 21 C 1.47291 * 125.90147 * 179.78265 * 20 19 18 22 22 N 1.34779 * 120.00068 * 179.97438 * 21 20 19 23 23 O 1.21613 * 120.00168 * 359.97438 * 21 20 19 24 24 N 1.36751 * 125.89798 * 336.12119 * 17 15 14 25 25 H 0.96998 * 125.66283 * 359.93822 * 24 17 15 26 26 C 1.46927 * 118.73931 * 53.60626 * 14 13 12 27 27 C 1.53037 * 109.46166 * 184.99907 * 11 10 9 28 28 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99547 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46844 * 60.00596 * 10 9 7 31 31 H 1.09004 * 109.47033 * 300.00366 * 10 9 7 32 32 H 1.09000 * 109.46343 * 304.97474 * 11 10 9 33 33 H 1.08997 * 109.49964 * 61.42542 * 12 11 10 34 34 H 1.09000 * 109.50083 * 301.33062 * 12 11 10 35 35 H 1.09002 * 109.58771 * 185.57681 * 13 12 11 36 36 H 1.09001 * 109.58831 * 65.15584 * 13 12 11 37 37 H 1.07994 * 126.26704 * 0.03167 * 18 17 15 38 38 H 1.07996 * 126.27292 * 180.13362 * 19 18 17 39 39 H 0.97003 * 119.99951 * 359.97438 * 22 21 20 40 40 H 0.96998 * 120.00209 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.58585 * 66.17787 * 26 14 13 42 42 H 1.08997 * 109.59247 * 186.46144 * 26 14 13 43 43 H 1.08996 * 109.49537 * 58.67849 * 27 11 10 44 44 H 1.08995 * 109.49848 * 298.58225 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 0.2689 -4.8095 -1.3087 13 6 -0.7492 -5.9542 -1.2914 14 7 -0.0404 -7.2135 -1.0261 15 6 -0.1816 -8.2683 -1.8529 16 8 0.5025 -9.2613 -1.6941 17 6 -1.1646 -8.2188 -2.9487 18 6 -1.1161 -8.9572 -4.1128 19 6 -2.2325 -8.6125 -4.8738 20 6 -2.9392 -7.6630 -4.1654 21 6 -4.1884 -7.0143 -4.5992 22 7 -4.7818 -6.0982 -3.8086 23 8 -4.6845 -7.3054 -5.6707 24 7 -2.2797 -7.4283 -2.9905 25 1 -2.5572 -6.8050 -2.3011 26 6 0.8250 -7.3011 0.1580 27 6 1.8253 -6.1413 0.1246 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7145 0.8895 31 1 2.6850 -3.7144 -0.8905 32 1 0.3800 -4.7132 0.8407 33 1 0.9497 -4.9408 -2.1497 34 1 -0.2545 -3.8587 -1.4089 35 1 -1.2492 -6.0131 -2.2582 36 1 -1.4852 -5.7768 -0.5073 37 1 -0.3544 -9.6731 -4.3839 38 1 -2.4938 -9.0123 -5.8424 39 1 -4.3864 -5.8663 -2.9537 40 1 -5.6047 -5.6712 -4.0941 41 1 0.2174 -7.2335 1.0605 42 1 1.3617 -8.2497 0.1491 43 1 2.4098 -6.1384 1.0446 44 1 2.4916 -6.2601 -0.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206301308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:58 Heat of formation + Delta-G solvation = -9.341067 kcal Electronic energy + Delta-G solvation = -26846.819719 eV Core-core repulsion = 22993.217207 eV Total energy + Delta-G solvation = -3853.602512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06690 -40.06835 -39.04311 -37.81853 -35.14697 -34.23352 -33.13027 -31.89066 -31.06540 -30.49049 -29.75240 -26.96518 -24.74888 -23.61555 -23.52682 -22.20747 -21.17595 -21.03784 -20.24276 -19.87362 -18.46971 -17.58931 -17.22694 -17.03060 -16.24523 -15.88229 -15.23730 -15.10242 -14.83735 -14.51050 -14.34137 -14.23339 -14.01705 -13.74924 -13.70064 -13.39016 -13.02648 -13.00325 -12.81453 -12.50238 -12.35763 -11.96428 -11.33513 -11.09848 -10.92140 -10.76600 -10.52875 -10.52382 -10.43773 -10.20783 -10.20010 -10.05166 -9.74358 -9.41753 -8.96341 -8.94922 -8.61947 -7.00283 -5.85672 -3.13652 0.70415 1.86640 2.39227 2.63141 2.96717 3.01241 3.06463 3.37634 3.44147 3.45723 4.12034 4.42787 4.49003 4.52150 4.82746 4.86274 4.89631 4.92618 4.98861 5.13496 5.18594 5.40215 5.51336 5.54657 5.60790 5.73949 5.77981 5.81154 5.92778 6.05953 6.07605 6.13761 6.25624 6.31360 6.32698 6.44210 6.46171 6.66600 6.69013 6.80417 6.88828 7.08164 7.63694 7.74557 7.81873 8.33877 9.45493 10.02229 10.36847 11.37436 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003127 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.933128 B = 8951.766808 C =10737.233479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.123 4.123 13 C 0.085 3.915 14 N -0.606 5.606 15 C 0.586 3.414 16 O -0.525 6.525 17 C -0.002 4.002 18 C -0.126 4.126 19 C -0.114 4.114 20 C -0.030 4.030 21 C 0.594 3.406 22 N -0.853 5.853 23 O -0.525 6.525 24 N -0.524 5.524 25 H 0.421 0.579 26 C 0.114 3.886 27 C -0.127 4.127 28 H 0.254 0.746 29 H 0.382 0.618 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.397 0.603 40 H 0.411 0.589 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -16.714 -3.433 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.161 4.161 13 C -0.038 4.038 14 N -0.339 5.339 15 C 0.374 3.626 16 O -0.400 6.400 17 C -0.119 4.119 18 C -0.152 4.152 19 C -0.140 4.140 20 C -0.147 4.147 21 C 0.379 3.621 22 N -0.417 5.417 23 O -0.401 6.401 24 N -0.127 5.127 25 H 0.264 0.736 26 C -0.008 4.008 27 C -0.166 4.166 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.225 0.775 40 H 0.243 0.757 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.661 -17.314 -3.928 18.962 hybrid contribution -0.164 1.827 0.720 1.971 sum -6.825 -15.487 -3.208 17.225 Atomic orbital electron populations 1.69646 1.05110 1.25563 1.58075 1.24714 0.95538 0.97686 1.03007 0.86127 0.78857 0.84070 0.77212 1.20542 1.21840 1.21851 1.19283 0.91110 0.84174 1.42383 0.91170 1.42368 1.05740 1.00007 1.89529 1.20669 0.93136 0.85254 0.97927 1.21311 0.97935 0.94658 0.97354 1.21906 0.97894 0.97584 0.98744 1.22305 0.96078 0.84193 1.01199 1.48091 1.47216 1.12315 1.26274 1.17250 0.82068 0.83092 0.80226 1.90826 1.45785 1.32236 1.71188 1.20600 0.91710 1.00042 0.99575 1.21298 0.99900 1.01481 0.92520 1.21315 0.94537 0.97525 1.00632 1.20563 0.97990 1.06184 0.89940 1.17146 0.82336 0.78641 0.83938 1.43735 1.30275 1.44413 1.23227 1.90886 1.64144 1.63190 1.21844 1.42711 1.19931 1.33098 1.16953 0.73574 1.21706 0.92467 1.00559 0.86031 1.21923 0.97775 0.93801 1.03071 0.93587 0.78376 0.96207 0.96327 0.90888 0.91393 0.89095 0.90084 0.90650 0.82562 0.82532 0.77506 0.75696 0.91149 0.88792 0.90332 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.30 5.32 -59.91 -0.32 -17.62 16 10 C 0.16 2.93 5.65 -4.04 -0.02 2.90 16 11 C -0.09 -1.29 2.19 -90.58 -0.20 -1.49 16 12 C -0.12 -1.58 5.25 -26.61 -0.14 -1.72 16 13 C 0.09 0.81 5.30 -3.71 -0.02 0.79 16 14 N -0.61 -6.56 2.97 -174.09 -0.52 -7.08 16 15 C 0.59 7.25 7.64 -12.58 -0.10 7.16 16 16 O -0.52 -8.02 16.39 5.26 0.09 -7.94 16 17 C 0.00 -0.02 6.37 -82.10 -0.52 -0.54 16 18 C -0.13 -1.33 10.69 -39.24 -0.42 -1.75 16 19 C -0.11 -1.15 10.60 -39.24 -0.42 -1.57 16 20 C -0.03 -0.29 7.04 -82.10 -0.58 -0.87 16 21 C 0.59 5.91 8.08 -12.58 -0.10 5.81 16 22 N -0.85 -5.13 8.87 30.40 0.27 -4.86 16 23 O -0.53 -7.16 17.71 5.27 0.09 -7.07 16 24 N -0.52 -4.38 4.66 -5.89 -0.03 -4.41 16 25 H 0.42 2.49 5.56 -40.82 -0.23 2.27 16 26 C 0.11 1.21 6.44 -3.71 -0.02 1.18 16 27 C -0.13 -1.47 5.36 -26.61 -0.14 -1.61 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.38 9.29 6.84 -40.82 -0.28 9.01 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 35 H 0.08 0.68 4.22 -51.93 -0.22 0.46 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.40 1.41 7.93 -40.82 -0.32 1.09 16 40 H 0.41 2.02 8.93 -40.82 -0.36 1.65 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -34.47 360.96 -8.12 -42.59 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.92 Total: 9.21 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.93 Total: 1.23 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.13 Total: -60.25 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.18 Total: -15.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.47 -8.12 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206301308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.252 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds