Wall clock time and date at job start Tue Mar 31 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47246 * 300.00066 * 3 2 1 6 6 H 1.48502 * 109.46860 * 60.00134 * 3 2 1 7 7 C 1.38809 * 120.00613 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00367 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00223 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47221 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.44874 * 64.93898 * 11 10 9 13 13 C 1.53193 * 109.31257 * 181.37904 * 12 11 10 14 14 N 1.46920 * 108.77821 * 305.36419 * 13 12 11 15 15 C 1.34773 * 120.63207 * 233.59151 * 14 13 12 16 16 O 1.21623 * 119.99830 * 173.20939 * 15 14 13 17 17 C 1.47293 * 120.00373 * 353.19897 * 15 14 13 18 18 C 1.37935 * 125.90187 * 155.79980 * 17 15 14 19 19 C 1.39441 * 107.46193 * 179.88466 * 18 17 15 20 20 C 1.37938 * 107.46189 * 0.38573 * 19 18 17 21 21 C 1.47291 * 125.90147 * 179.78265 * 20 19 18 22 22 N 1.34779 * 120.00068 * 179.97438 * 21 20 19 23 23 O 1.21613 * 120.00168 * 359.97438 * 21 20 19 24 24 N 1.36751 * 125.89798 * 336.12119 * 17 15 14 25 25 H 0.96998 * 125.66283 * 359.93822 * 24 17 15 26 26 C 1.46927 * 118.73931 * 53.60626 * 14 13 12 27 27 C 1.53037 * 109.46166 * 184.99907 * 11 10 9 28 28 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99547 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46844 * 60.00596 * 10 9 7 31 31 H 1.09004 * 109.47033 * 300.00366 * 10 9 7 32 32 H 1.09000 * 109.46343 * 304.97474 * 11 10 9 33 33 H 1.08997 * 109.49964 * 61.42542 * 12 11 10 34 34 H 1.09000 * 109.50083 * 301.33062 * 12 11 10 35 35 H 1.09002 * 109.58771 * 185.57681 * 13 12 11 36 36 H 1.09001 * 109.58831 * 65.15584 * 13 12 11 37 37 H 1.07994 * 126.26704 * 0.03167 * 18 17 15 38 38 H 1.07996 * 126.27292 * 180.13362 * 19 18 17 39 39 H 0.97003 * 119.99951 * 359.97438 * 22 21 20 40 40 H 0.96998 * 120.00209 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.58585 * 66.17787 * 26 14 13 42 42 H 1.08997 * 109.59247 * 186.46144 * 26 14 13 43 43 H 1.08996 * 109.49537 * 58.67849 * 27 11 10 44 44 H 1.08995 * 109.49848 * 298.58225 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 0.2689 -4.8095 -1.3087 13 6 -0.7492 -5.9542 -1.2914 14 7 -0.0404 -7.2135 -1.0261 15 6 -0.1816 -8.2683 -1.8529 16 8 0.5025 -9.2613 -1.6941 17 6 -1.1646 -8.2188 -2.9487 18 6 -1.1161 -8.9572 -4.1128 19 6 -2.2325 -8.6125 -4.8738 20 6 -2.9392 -7.6630 -4.1654 21 6 -4.1884 -7.0143 -4.5992 22 7 -4.7818 -6.0982 -3.8086 23 8 -4.6845 -7.3054 -5.6707 24 7 -2.2797 -7.4283 -2.9905 25 1 -2.5572 -6.8050 -2.3011 26 6 0.8250 -7.3011 0.1580 27 6 1.8253 -6.1413 0.1246 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.6848 -3.7145 0.8895 31 1 2.6850 -3.7144 -0.8905 32 1 0.3800 -4.7132 0.8407 33 1 0.9497 -4.9408 -2.1497 34 1 -0.2545 -3.8587 -1.4089 35 1 -1.2492 -6.0131 -2.2582 36 1 -1.4852 -5.7768 -0.5073 37 1 -0.3544 -9.6731 -4.3839 38 1 -2.4938 -9.0123 -5.8424 39 1 -4.3864 -5.8663 -2.9537 40 1 -5.6047 -5.6712 -4.0941 41 1 0.2174 -7.2335 1.0605 42 1 1.3617 -8.2497 0.1491 43 1 2.4098 -6.1384 1.0446 44 1 2.4916 -6.2601 -0.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206301308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:57 Heat of formation + Delta-G solvation = -35.247536 kcal Electronic energy + Delta-G solvation = -26847.943108 eV Core-core repulsion = 22993.217207 eV Total energy + Delta-G solvation = -3854.725901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.86931 -40.98020 -39.87716 -38.91277 -36.64207 -34.94913 -34.61079 -32.93513 -32.13655 -31.84228 -30.63982 -28.31228 -26.03479 -24.84756 -24.56543 -23.38026 -22.24620 -21.83595 -21.19023 -20.76367 -19.35823 -19.11018 -18.29761 -17.86473 -17.17010 -16.76283 -16.70453 -16.08112 -15.92015 -15.62457 -15.44524 -15.37039 -15.17437 -14.98999 -14.77443 -14.52295 -14.07186 -13.92941 -13.79984 -13.73617 -13.56233 -13.12008 -12.93998 -12.79416 -12.26200 -12.13546 -11.97582 -11.70238 -11.68359 -11.55056 -11.34951 -11.17569 -10.93267 -10.87826 -10.18367 -9.88290 -9.43170 -8.97523 -7.95935 -5.22708 -0.11183 1.03073 1.47248 1.48439 1.57429 1.58796 1.77578 2.16747 2.21469 2.38510 2.55777 3.28380 3.38331 3.63255 3.75190 3.78407 3.85210 4.01204 4.10297 4.18018 4.23574 4.30380 4.33502 4.52811 4.63449 4.73685 4.75884 4.82099 4.92217 4.97984 5.03034 5.08810 5.13899 5.21197 5.34769 5.45880 5.50107 5.53562 5.63682 5.74562 5.99756 6.18905 6.27955 6.28140 6.89018 7.09448 7.35331 8.10808 8.35655 9.27352 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.003127 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.933128 B = 8951.766808 C =10737.233479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.156 3.844 11 C -0.083 4.083 12 C -0.119 4.119 13 C 0.092 3.908 14 N -0.602 5.602 15 C 0.587 3.413 16 O -0.559 6.559 17 C -0.014 4.014 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.027 4.027 21 C 0.594 3.406 22 N -0.832 5.832 23 O -0.567 6.567 24 N -0.506 5.506 25 H 0.433 0.567 26 C 0.116 3.884 27 C -0.118 4.118 28 H 0.251 0.749 29 H 0.378 0.622 30 H 0.019 0.981 31 H 0.010 0.990 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.412 0.588 40 H 0.419 0.581 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -16.810 -2.694 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.384 5.384 10 C 0.029 3.971 11 C -0.102 4.102 12 C -0.157 4.157 13 C -0.031 4.031 14 N -0.334 5.334 15 C 0.375 3.625 16 O -0.437 6.437 17 C -0.131 4.131 18 C -0.157 4.157 19 C -0.152 4.152 20 C -0.144 4.144 21 C 0.380 3.620 22 N -0.396 5.396 23 O -0.446 6.446 24 N -0.110 5.110 25 H 0.279 0.721 26 C -0.006 4.006 27 C -0.157 4.157 28 H 0.060 0.940 29 H 0.210 0.790 30 H 0.037 0.963 31 H 0.028 0.972 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.242 0.758 40 H 0.253 0.747 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.097 -17.383 -3.132 19.035 hybrid contribution 0.017 1.858 0.503 1.925 sum -7.079 -15.525 -2.629 17.264 Atomic orbital electron populations 1.69767 1.06256 1.25930 1.59518 1.25429 0.96391 1.00631 1.03746 0.85181 0.78213 0.80316 0.76704 1.19511 1.22068 1.21986 1.19618 0.91365 0.85606 1.41108 0.91261 1.42520 1.05701 1.00866 1.89287 1.20817 0.93978 0.85088 0.97195 1.21195 0.97136 0.93775 0.98093 1.21786 0.98173 0.98120 0.97612 1.22347 0.95392 0.82176 1.03157 1.48130 1.47006 1.12269 1.25983 1.17394 0.81893 0.82874 0.80296 1.90808 1.47231 1.33576 1.72121 1.20418 0.92298 1.01052 0.99368 1.21452 1.00124 1.01517 0.92637 1.21476 0.94615 0.97951 1.01116 1.20577 0.97867 1.05862 0.90094 1.17170 0.82247 0.78960 0.83664 1.43581 1.30063 1.42763 1.23166 1.90872 1.65226 1.64784 1.23713 1.42551 1.18986 1.32660 1.16826 0.72108 1.21740 0.92512 0.99624 0.86696 1.21837 0.97755 0.92784 1.03298 0.93978 0.78957 0.96316 0.97155 0.90355 0.92825 0.90964 0.88782 0.87700 0.82206 0.81998 0.75774 0.74718 0.88960 0.89230 0.89110 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.70 13.06 21.65 0.28 -55.42 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.97 44.66 29.55 68.60 2.03 46.69 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.24 -13.16 9.99 84.03 0.84 -12.32 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.74 -34.84 5.32 -343.46 -1.83 -36.67 16 10 C 0.16 5.69 5.65 86.38 0.49 6.18 16 11 C -0.08 -2.17 2.19 -10.77 -0.02 -2.20 16 12 C -0.12 -2.89 5.25 30.67 0.16 -2.73 16 13 C 0.09 1.51 5.30 86.36 0.46 1.97 16 14 N -0.60 -11.74 2.97 -822.93 -2.45 -14.18 16 15 C 0.59 13.68 7.64 86.63 0.66 14.34 16 16 O -0.56 -16.69 16.39 -4.10 -0.07 -16.76 16 17 C -0.01 -0.27 6.37 40.69 0.26 -0.01 16 18 C -0.13 -2.66 10.69 22.49 0.24 -2.42 16 19 C -0.13 -2.44 10.60 22.49 0.24 -2.20 16 20 C -0.03 -0.47 7.04 40.69 0.29 -0.19 16 21 C 0.59 10.95 8.08 86.62 0.70 11.65 16 22 N -0.83 -8.13 8.87 -175.98 -1.56 -9.69 16 23 O -0.57 -15.14 17.71 -4.07 -0.07 -15.21 16 24 N -0.51 -7.38 4.66 -172.55 -0.80 -8.18 16 25 H 0.43 3.81 5.56 -92.71 -0.52 3.29 16 26 C 0.12 2.18 6.44 86.36 0.56 2.74 16 27 C -0.12 -2.51 5.36 30.67 0.16 -2.35 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 29 H 0.38 18.32 6.84 -92.70 -0.63 17.68 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16 35 H 0.09 1.31 4.22 -2.39 -0.01 1.30 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.41 1.70 7.93 -92.71 -0.74 0.96 16 40 H 0.42 3.20 8.93 -92.71 -0.83 2.38 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.85 7.00 -2.39 -0.02 1.83 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.17 360.96 -0.60 -74.77 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -1.63 Total: 25.55 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.50 Total: 9.10 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -6.35 Total: -124.14 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.14 Total: -31.97 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.17 -0.60 -74.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206301308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.527 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds