Wall clock time and date at job start Tue Mar 31 2020 12:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48491 * 109.47218 * 269.99941 * 3 2 1 5 5 H 1.48501 * 109.47165 * 30.00627 * 3 2 1 6 6 H 1.48508 * 109.46766 * 150.00101 * 3 2 1 7 7 C 1.38811 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00013 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00116 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00440 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47568 * 180.02562 * 10 9 7 12 12 C 1.53036 * 109.46218 * 175.00689 * 11 10 9 13 13 C 1.53188 * 109.31257 * 181.37325 * 12 11 10 14 14 N 1.46922 * 108.77499 * 305.36198 * 13 12 11 15 15 C 1.34781 * 120.63165 * 233.58489 * 14 13 12 16 16 O 1.21678 * 119.99738 * 6.80163 * 15 14 13 17 17 C 1.46804 * 120.00265 * 186.79687 * 15 14 13 18 18 C 1.36359 * 125.85187 * 204.55252 * 17 15 14 19 19 C 1.41302 * 107.00931 * 180.13059 * 18 17 15 20 20 C 1.47397 * 126.46204 * 179.89128 * 19 18 17 21 21 N 1.34773 * 120.00261 * 179.71620 * 20 19 18 22 22 O 1.21613 * 119.99819 * 359.71806 * 20 19 18 23 23 C 1.38203 * 107.07880 * 359.63435 * 19 18 17 24 24 N 1.34266 * 108.39501 * 0.22373 * 23 19 18 25 25 H 0.97000 * 125.39168 * 180.02562 * 24 23 19 26 26 C 1.46927 * 118.74168 * 53.86097 * 14 13 12 27 27 C 1.53045 * 109.44396 * 295.06554 * 11 10 9 28 28 H 0.97000 * 120.00118 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99342 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46869 * 60.00009 * 10 9 7 31 31 H 1.09005 * 109.47324 * 300.00883 * 10 9 7 32 32 H 1.09000 * 109.45996 * 55.02577 * 11 10 9 33 33 H 1.08996 * 109.50020 * 61.41338 * 12 11 10 34 34 H 1.09006 * 109.51834 * 301.33402 * 12 11 10 35 35 H 1.09002 * 109.58791 * 185.57490 * 13 12 11 36 36 H 1.09007 * 109.70690 * 65.21783 * 13 12 11 37 37 H 1.07999 * 126.49429 * 359.97438 * 18 17 15 38 38 H 0.96996 * 119.99838 * 359.97438 * 21 20 19 39 39 H 0.96998 * 120.00149 * 179.73192 * 21 20 19 40 40 H 1.07998 * 125.80747 * 180.20492 * 23 19 18 41 41 H 1.09000 * 109.59022 * 65.92717 * 26 14 13 42 42 H 1.08997 * 109.59086 * 186.35543 * 26 14 13 43 43 H 1.08995 * 109.49821 * 298.56740 * 27 11 10 44 44 H 1.08992 * 109.50022 * 58.66830 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.3802 -3.5116 0.1245 13 6 7.8847 -3.2251 0.1587 14 7 8.2419 -2.4315 -1.0250 15 6 9.2266 -2.8364 -1.8516 16 8 9.7448 -3.9257 -1.6927 17 6 9.6737 -1.9630 -2.9436 18 6 10.2763 -2.3710 -4.0968 19 6 10.5380 -1.2106 -4.8594 20 6 11.1829 -1.1598 -6.1838 21 7 11.3641 0.0250 -6.8001 22 8 11.5515 -2.1869 -6.7205 23 6 10.0701 -0.1327 -4.1319 24 7 9.5516 -0.5912 -2.9813 25 1 9.1538 -0.0433 -2.2867 26 6 7.5096 -1.1851 -1.2873 27 6 6.0055 -1.4973 -1.3083 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 -0.0007 30 1 3.8484 -3.0427 -0.8908 31 1 3.8490 -3.0424 0.8891 32 1 5.8657 -1.5459 0.8411 33 1 6.1502 -4.1478 -0.7301 34 1 6.0852 -4.0170 1.0441 35 1 8.4360 -4.1653 0.1483 36 1 8.1320 -2.6664 1.0614 37 1 10.5114 -3.3881 -4.3736 38 1 11.0698 0.8443 -6.3723 39 1 11.7920 0.0588 -7.6700 40 1 10.1142 0.9024 -4.4368 41 1 7.7246 -0.4623 -0.5002 42 1 7.8134 -0.7788 -2.2521 43 1 5.7792 -2.1524 -2.1495 44 1 5.4438 -0.5687 -1.4084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206688204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:00 Heat of formation + Delta-G solvation = -5.461720 kcal Electronic energy + Delta-G solvation = -26645.911608 eV Core-core repulsion = 22792.477317 eV Total energy + Delta-G solvation = -3853.434291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16394 -40.02952 -39.01350 -37.87592 -35.27330 -34.00389 -33.11987 -31.95121 -31.29516 -30.80188 -29.73847 -27.15652 -24.40602 -24.09988 -23.27691 -22.55431 -21.24230 -20.72402 -20.18676 -19.87430 -18.42953 -17.67437 -17.15199 -16.90082 -16.41354 -15.85389 -15.78702 -15.05138 -14.78245 -14.55214 -14.32250 -14.29266 -14.06643 -14.03322 -13.63101 -13.56338 -13.32138 -12.93747 -12.74410 -12.54154 -12.48422 -12.06662 -11.49573 -11.39479 -11.00751 -10.69243 -10.60026 -10.39946 -10.36264 -10.27296 -10.16342 -10.00443 -9.65433 -9.49199 -8.99868 -8.97196 -8.70776 -7.30261 -5.83262 -3.19064 1.05768 1.48696 2.45371 2.59349 2.97612 3.26604 3.27664 3.27860 3.30806 3.36401 4.15245 4.35399 4.43770 4.50683 4.54401 4.74793 4.75699 4.83644 4.90392 5.05017 5.09375 5.30785 5.40801 5.48159 5.53741 5.58484 5.61209 5.69677 5.75716 5.94265 6.00564 6.02992 6.16218 6.24020 6.28524 6.34850 6.47342 6.60575 6.70797 6.72946 7.04156 7.08549 7.83964 7.93210 8.03258 8.35695 9.14369 9.86283 10.06005 11.35378 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002928 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.177758 B = 9561.345552 C =10871.920790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.608 5.608 15 C 0.589 3.411 16 O -0.526 6.526 17 C -0.052 4.052 18 C -0.047 4.047 19 C -0.236 4.236 20 C 0.594 3.406 21 N -0.856 5.856 22 O -0.544 6.544 23 C 0.068 3.932 24 N -0.525 5.525 25 H 0.426 0.574 26 C 0.087 3.913 27 C -0.125 4.125 28 H 0.260 0.740 29 H 0.359 0.641 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.158 0.842 38 H 0.398 0.602 39 H 0.404 0.596 40 H 0.181 0.819 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.726 3.567 -6.393 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.341 5.341 15 C 0.378 3.622 16 O -0.402 6.402 17 C -0.162 4.162 18 C -0.073 4.073 19 C -0.247 4.247 20 C 0.381 3.619 21 N -0.419 5.419 22 O -0.422 6.422 23 C -0.074 4.074 24 N -0.125 5.125 25 H 0.270 0.730 26 C -0.037 4.037 27 C -0.163 4.163 28 H 0.070 0.930 29 H 0.192 0.808 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.176 0.824 38 H 0.226 0.774 39 H 0.234 0.766 40 H 0.198 0.802 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.842 2.148 -6.310 24.757 hybrid contribution 0.162 2.237 0.165 2.249 sum 24.004 4.385 -6.145 25.163 Atomic orbital electron populations 1.69699 1.05103 1.25820 1.57559 1.24689 0.95243 0.97177 1.02154 0.86545 0.79179 0.85126 0.77645 1.21110 1.21689 1.20458 1.19073 0.80669 0.94759 1.42888 0.89233 1.42714 1.04022 1.02154 1.91222 1.20651 0.87806 0.89263 0.98789 1.21365 0.96780 0.96281 0.97232 1.21908 0.93424 0.97872 1.03293 1.21691 0.96318 0.96708 0.86053 1.48055 1.34918 1.24673 1.26503 1.17098 0.79464 0.85486 0.80180 1.90848 1.57186 1.20999 1.71177 1.20067 1.13628 0.82289 1.00264 1.21075 0.96126 0.99245 0.90812 1.19585 1.13523 0.93722 0.97821 1.17393 0.77290 0.83291 0.83926 1.43676 1.65348 1.08686 1.24193 1.90838 1.51117 1.33674 1.66551 1.22469 0.98821 0.99209 0.86905 1.42534 1.45393 1.07208 1.17361 0.73020 1.22349 0.93993 0.86051 1.01270 1.21999 0.92810 1.02436 0.99056 0.93022 0.80807 0.95426 0.95376 0.90984 0.91126 0.90184 0.88728 0.91257 0.82409 0.77406 0.76562 0.80154 0.90839 0.89869 0.90934 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.97 55.49 0.78 -28.07 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.03 27.74 -169.99 -4.71 16.32 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 7 C -0.24 -6.73 10.47 -15.06 -0.16 -6.88 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.76 -16.90 5.12 -59.91 -0.31 -17.21 16 10 C 0.16 2.91 5.65 -4.04 -0.02 2.88 16 11 C -0.10 -1.29 2.19 -90.58 -0.20 -1.48 16 12 C -0.13 -1.42 5.36 -26.62 -0.14 -1.57 16 13 C 0.11 1.19 6.44 -3.71 -0.02 1.17 16 14 N -0.61 -6.47 2.97 -173.99 -0.52 -6.99 16 15 C 0.59 7.36 7.62 -12.80 -0.10 7.27 16 16 O -0.53 -8.34 16.38 5.21 0.09 -8.25 16 17 C -0.05 -0.54 6.31 -82.41 -0.52 -1.06 16 18 C -0.05 -0.54 10.46 -39.09 -0.41 -0.95 16 19 C -0.24 -2.19 6.13 -105.02 -0.64 -2.83 16 20 C 0.59 5.97 8.09 -12.53 -0.10 5.87 16 21 N -0.86 -4.38 8.86 30.43 0.27 -4.11 16 22 O -0.54 -8.03 17.76 5.27 0.09 -7.93 16 23 C 0.07 0.38 11.43 -16.50 -0.19 0.19 16 24 N -0.53 -3.46 4.65 -9.30 -0.04 -3.51 16 25 H 0.43 1.83 6.37 -40.82 -0.26 1.57 16 26 C 0.09 0.77 5.32 -3.48 -0.02 0.75 16 27 C -0.12 -1.50 5.26 -26.38 -0.14 -1.64 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.36 7.66 4.71 -40.82 -0.19 7.46 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.07 7.00 -51.93 -0.36 0.70 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.40 0.68 7.74 -40.82 -0.32 0.36 16 39 H 0.40 1.69 8.93 -40.82 -0.36 1.32 16 40 H 0.18 0.16 7.44 -52.49 -0.39 -0.23 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.61 4.21 -51.93 -0.22 0.39 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.08 7.15 -51.93 -0.37 0.71 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -37.91 357.50 -7.60 -45.51 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.87 Total: 7.15 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.76 Total: 1.70 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.18 Total: -59.89 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.18 Total: -16.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.91 -7.60 -45.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206688204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.048 kcal (2) G-P(sol) polarization free energy of solvation -37.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds