Wall clock time and date at job start Tue Mar 31 2020 12:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48491 * 109.47218 * 269.99941 * 3 2 1 5 5 H 1.48501 * 109.47165 * 30.00627 * 3 2 1 6 6 H 1.48508 * 109.46766 * 150.00101 * 3 2 1 7 7 C 1.38811 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00013 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00116 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00440 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47568 * 180.02562 * 10 9 7 12 12 C 1.53036 * 109.46218 * 175.00689 * 11 10 9 13 13 C 1.53188 * 109.31257 * 181.37325 * 12 11 10 14 14 N 1.46922 * 108.77499 * 305.36198 * 13 12 11 15 15 C 1.34781 * 120.63165 * 233.58489 * 14 13 12 16 16 O 1.21678 * 119.99738 * 6.80163 * 15 14 13 17 17 C 1.46804 * 120.00265 * 186.79687 * 15 14 13 18 18 C 1.36359 * 125.85187 * 204.55252 * 17 15 14 19 19 C 1.41302 * 107.00931 * 180.13059 * 18 17 15 20 20 C 1.47397 * 126.46204 * 179.89128 * 19 18 17 21 21 N 1.34773 * 120.00261 * 179.71620 * 20 19 18 22 22 O 1.21613 * 119.99819 * 359.71806 * 20 19 18 23 23 C 1.38203 * 107.07880 * 359.63435 * 19 18 17 24 24 N 1.34266 * 108.39501 * 0.22373 * 23 19 18 25 25 H 0.97000 * 125.39168 * 180.02562 * 24 23 19 26 26 C 1.46927 * 118.74168 * 53.86097 * 14 13 12 27 27 C 1.53045 * 109.44396 * 295.06554 * 11 10 9 28 28 H 0.97000 * 120.00118 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99342 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46869 * 60.00009 * 10 9 7 31 31 H 1.09005 * 109.47324 * 300.00883 * 10 9 7 32 32 H 1.09000 * 109.45996 * 55.02577 * 11 10 9 33 33 H 1.08996 * 109.50020 * 61.41338 * 12 11 10 34 34 H 1.09006 * 109.51834 * 301.33402 * 12 11 10 35 35 H 1.09002 * 109.58791 * 185.57490 * 13 12 11 36 36 H 1.09007 * 109.70690 * 65.21783 * 13 12 11 37 37 H 1.07999 * 126.49429 * 359.97438 * 18 17 15 38 38 H 0.96996 * 119.99838 * 359.97438 * 21 20 19 39 39 H 0.96998 * 120.00149 * 179.73192 * 21 20 19 40 40 H 1.07998 * 125.80747 * 180.20492 * 23 19 18 41 41 H 1.09000 * 109.59022 * 65.92717 * 26 14 13 42 42 H 1.08997 * 109.59086 * 186.35543 * 26 14 13 43 43 H 1.08995 * 109.49821 * 298.56740 * 27 11 10 44 44 H 1.08992 * 109.50022 * 58.66830 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 6 6.3802 -3.5116 0.1245 13 6 7.8847 -3.2251 0.1587 14 7 8.2419 -2.4315 -1.0250 15 6 9.2266 -2.8364 -1.8516 16 8 9.7448 -3.9257 -1.6927 17 6 9.6737 -1.9630 -2.9436 18 6 10.2763 -2.3710 -4.0968 19 6 10.5380 -1.2106 -4.8594 20 6 11.1829 -1.1598 -6.1838 21 7 11.3641 0.0250 -6.8001 22 8 11.5515 -2.1869 -6.7205 23 6 10.0701 -0.1327 -4.1319 24 7 9.5516 -0.5912 -2.9813 25 1 9.1538 -0.0433 -2.2867 26 6 7.5096 -1.1851 -1.2873 27 6 6.0055 -1.4973 -1.3083 28 1 -0.4850 0.8400 0.0004 29 1 3.8645 -0.3622 -0.0007 30 1 3.8484 -3.0427 -0.8908 31 1 3.8490 -3.0424 0.8891 32 1 5.8657 -1.5459 0.8411 33 1 6.1502 -4.1478 -0.7301 34 1 6.0852 -4.0170 1.0441 35 1 8.4360 -4.1653 0.1483 36 1 8.1320 -2.6664 1.0614 37 1 10.5114 -3.3881 -4.3736 38 1 11.0698 0.8443 -6.3723 39 1 11.7920 0.0588 -7.6700 40 1 10.1142 0.9024 -4.4368 41 1 7.7246 -0.4623 -0.5002 42 1 7.8134 -0.7788 -2.2521 43 1 5.7792 -2.1524 -2.1495 44 1 5.4438 -0.5687 -1.4084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206688204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:59 Heat of formation + Delta-G solvation = -36.595025 kcal Electronic energy + Delta-G solvation = -26647.261649 eV Core-core repulsion = 22792.477317 eV Total energy + Delta-G solvation = -3854.784332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.85332 -40.89690 -39.78619 -38.95311 -36.75660 -34.73479 -34.54145 -33.05837 -32.43337 -31.96949 -30.50733 -28.47718 -25.67924 -24.94291 -24.17820 -23.77653 -22.49519 -21.55631 -21.04554 -20.62806 -19.69422 -19.09757 -17.82660 -17.62116 -17.21928 -16.70800 -16.62885 -16.46509 -16.00584 -15.74281 -15.53830 -15.21685 -14.98369 -14.86481 -14.74457 -14.56590 -14.42854 -14.20980 -13.87123 -13.71329 -13.38697 -13.30515 -13.06741 -12.78270 -12.27182 -12.17200 -11.88394 -11.71474 -11.62865 -11.43681 -11.23853 -11.17222 -10.95711 -10.63552 -10.19248 -9.85657 -9.38602 -9.29252 -8.01525 -5.36254 0.38050 0.75261 1.37442 1.45020 1.52711 1.72911 1.84261 2.21516 2.50950 2.55269 2.74861 3.29519 3.41408 3.54055 3.66987 3.78673 3.88553 3.99227 4.05026 4.12095 4.20862 4.27975 4.32111 4.48239 4.61851 4.70445 4.74432 4.81889 4.86818 4.88242 4.98694 5.06462 5.09853 5.20053 5.34145 5.43549 5.48301 5.56742 5.76154 5.97710 6.20481 6.21850 6.28982 6.60348 6.94359 7.09307 7.45674 7.83560 8.06115 9.20394 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002928 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.177758 B = 9561.345552 C =10871.920790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.071 4.071 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.241 1.241 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.752 5.752 10 C 0.159 3.841 11 C -0.086 4.086 12 C -0.119 4.119 13 C 0.116 3.884 14 N -0.604 5.604 15 C 0.586 3.414 16 O -0.573 6.573 17 C -0.066 4.066 18 C -0.074 4.074 19 C -0.266 4.266 20 C 0.590 3.410 21 N -0.829 5.829 22 O -0.607 6.607 23 C 0.118 3.882 24 N -0.509 5.509 25 H 0.442 0.558 26 C 0.091 3.909 27 C -0.125 4.125 28 H 0.258 0.742 29 H 0.369 0.631 30 H 0.013 0.987 31 H 0.021 0.979 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.242 0.758 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.041 7.837 -5.983 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.261 4.261 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.227 1.227 6 H -0.165 1.165 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.399 5.399 10 C 0.032 3.968 11 C -0.105 4.105 12 C -0.158 4.158 13 C -0.006 4.006 14 N -0.336 5.336 15 C 0.375 3.625 16 O -0.453 6.453 17 C -0.177 4.177 18 C -0.100 4.100 19 C -0.276 4.276 20 C 0.377 3.623 21 N -0.393 5.393 22 O -0.490 6.490 23 C -0.025 4.025 24 N -0.110 5.110 25 H 0.289 0.711 26 C -0.031 4.031 27 C -0.163 4.163 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.145 0.855 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.258 0.742 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.177 6.472 -5.875 27.598 hybrid contribution -0.646 0.831 0.008 1.053 sum 25.531 7.303 -5.868 27.196 Atomic orbital electron populations 1.69920 1.07547 1.26860 1.59558 1.25670 0.96230 1.01896 1.02350 0.85301 0.78902 0.78537 0.78412 1.19793 1.22662 1.16453 1.19019 0.83043 0.93289 1.41714 0.93477 1.42617 1.02171 1.04146 1.90939 1.20791 0.90968 0.87361 0.97642 1.21253 0.92984 0.97567 0.98680 1.21830 0.94031 0.96772 1.03161 1.21694 0.94995 0.96884 0.86989 1.48116 1.34311 1.25182 1.25993 1.17395 0.79477 0.85140 0.80447 1.90818 1.58929 1.23075 1.72460 1.19610 1.14774 0.83973 0.99332 1.21033 0.97385 0.99142 0.92437 1.19582 1.15611 0.94190 0.98191 1.17615 0.76830 0.83635 0.84199 1.43427 1.63726 1.08029 1.24071 1.90807 1.54015 1.36066 1.68072 1.23268 0.94071 1.00507 0.84670 1.42457 1.44866 1.05607 1.18110 0.71092 1.22495 0.91209 0.85669 1.03737 1.21956 0.95240 1.01634 0.97484 0.93345 0.79633 0.96875 0.96072 0.89434 0.92744 0.89231 0.89969 0.88717 0.85509 0.74948 0.75781 0.74150 0.87331 0.88021 0.92743 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.56 13.97 21.65 0.30 -62.26 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 42.07 27.74 68.60 1.90 43.97 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.24 -8.93 6.52 99.48 0.65 -8.28 16 7 C -0.24 -13.39 10.47 84.03 0.88 -12.51 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 9 N -0.75 -32.66 5.12 -343.46 -1.76 -34.42 16 10 C 0.16 5.59 5.65 86.38 0.49 6.08 16 11 C -0.09 -2.06 2.19 -10.77 -0.02 -2.08 16 12 C -0.12 -2.52 5.36 30.67 0.16 -2.35 16 13 C 0.12 2.19 6.44 86.36 0.56 2.75 16 14 N -0.60 -11.46 2.97 -822.62 -2.44 -13.90 16 15 C 0.59 14.25 7.62 86.48 0.66 14.91 16 16 O -0.57 -18.85 16.38 -4.28 -0.07 -18.92 16 17 C -0.07 -1.30 6.31 40.01 0.25 -1.04 16 18 C -0.07 -1.74 10.46 22.59 0.24 -1.50 16 19 C -0.27 -4.46 6.13 -20.12 -0.12 -4.58 16 20 C 0.59 11.27 8.09 86.66 0.70 11.97 16 21 N -0.83 -6.05 8.86 -175.91 -1.56 -7.61 16 22 O -0.61 -18.67 17.76 -4.07 -0.07 -18.75 16 23 C 0.12 0.71 11.43 84.31 0.96 1.68 16 24 N -0.51 -4.45 4.65 -183.35 -0.85 -5.30 16 25 H 0.44 1.13 6.37 -92.71 -0.59 0.54 16 26 C 0.09 1.22 5.32 86.51 0.46 1.68 16 27 C -0.12 -2.63 5.26 30.82 0.16 -2.46 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.37 14.47 4.71 -92.71 -0.44 14.04 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.08 1.81 7.00 -2.39 -0.02 1.80 16 36 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.42 -0.62 7.74 -92.71 -0.72 -1.34 16 39 H 0.41 2.46 8.93 -92.71 -0.83 1.63 16 40 H 0.24 -1.57 7.44 -2.91 -0.02 -1.59 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.99 4.21 -2.39 -0.01 0.98 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.77 7.15 -2.39 -0.02 1.75 16 Total: -1.00 -90.99 357.50 -0.25 -91.24 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -1.55 Total: 16.97 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.84 Total: 8.97 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -6.31 Total: -123.49 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.66 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.90 Total: 43.97 kcal Total: -90.99 -0.25 -91.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206688204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.649 kcal (2) G-P(sol) polarization free energy of solvation -90.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds