Wall clock time and date at job start Tue Mar 31 2020 12:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48492 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47123 * 300.00269 * 3 2 1 6 6 H 1.48502 * 109.47009 * 59.99742 * 3 2 1 7 7 C 1.39937 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 196.80852 * 7 2 1 9 9 C 1.41412 * 119.99436 * 16.81067 * 7 2 1 10 10 C 1.40772 * 120.21517 * 25.16130 * 9 7 2 11 11 C 1.37645 * 119.88801 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.31806 * 359.72365 * 11 10 9 13 13 C 1.39253 * 120.43299 * 0.55199 * 12 11 10 14 14 N 1.39935 * 119.94838 * 179.72544 * 13 12 11 15 15 C 1.34774 * 120.00002 * 325.52498 * 14 13 12 16 16 O 1.21282 * 120.00214 * 354.89758 * 15 14 13 17 17 C 1.50703 * 119.99693 * 174.89651 * 15 14 13 18 18 H 1.08996 * 109.46992 * 319.99990 * 17 15 14 19 19 N 1.46904 * 109.47003 * 200.00055 * 17 15 14 20 20 C 1.52997 * 109.47098 * 80.00495 * 17 15 14 21 21 C 1.53003 * 109.47153 * 184.99902 * 20 17 15 22 22 C 1.52996 * 109.47302 * 179.97438 * 21 20 17 23 23 N 1.46493 * 109.47207 * 179.97438 * 22 21 20 24 24 C 1.34779 * 119.99974 * 180.02562 * 23 22 21 25 25 N 1.34784 * 120.00018 * 179.97438 * 24 23 22 26 26 O 1.21581 * 120.00139 * 0.02562 * 24 23 22 27 27 C 1.38281 * 120.09974 * 359.44712 * 13 12 11 28 28 H 0.96994 * 119.99616 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.05656 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84021 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.78467 * 180.27367 * 12 11 10 32 32 H 0.97004 * 119.99763 * 145.52643 * 14 13 12 33 33 H 1.00902 * 110.99713 * 300.00614 * 19 17 15 34 34 H 1.00897 * 111.00075 * 63.95152 * 19 17 15 35 35 H 1.09001 * 109.47815 * 64.99494 * 20 17 15 36 36 H 1.09007 * 109.46624 * 304.99537 * 20 17 15 37 37 H 1.08998 * 109.47224 * 59.99661 * 21 20 17 38 38 H 1.08999 * 109.46931 * 299.99632 * 21 20 17 39 39 H 1.08999 * 109.47266 * 299.99964 * 22 21 20 40 40 H 1.09001 * 109.47302 * 59.99815 * 22 21 20 41 41 H 0.96997 * 120.00365 * 0.02562 * 23 22 21 42 42 H 0.96999 * 119.99581 * 0.02562 * 25 24 23 43 43 H 0.96995 * 119.99743 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.15927 * 180.25317 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2710 9 6 1.3462 -2.4105 -0.3531 10 6 0.2111 -2.3741 -1.1849 11 6 -0.4282 -3.5448 -1.5245 12 6 0.0433 -4.7602 -1.0563 13 6 1.1616 -4.8113 -0.2281 14 7 1.6259 -6.0442 0.2437 15 6 0.7514 -7.0296 0.5276 16 8 -0.4413 -6.8192 0.4632 17 6 1.2557 -8.3930 0.9252 18 1 2.1208 -8.6525 0.3151 19 7 0.1943 -9.3873 0.7179 20 6 1.6585 -8.3774 2.4011 21 6 2.2857 -9.7225 2.7729 22 6 2.6891 -9.7067 4.2486 23 7 3.2891 -10.9948 4.6047 24 6 3.7221 -11.2118 5.8624 25 7 4.2737 -12.3972 6.1902 26 8 3.6142 -10.3387 6.7016 27 6 1.8175 -3.6460 0.1241 28 1 -0.4849 0.8400 0.0004 29 1 -0.1580 -1.4291 -1.5553 30 1 -1.2988 -3.5160 -2.1630 31 1 -0.4624 -5.6740 -1.3317 32 1 2.5771 -6.1895 0.3664 33 1 -0.6194 -9.1686 1.2730 34 1 -0.0445 -9.4628 -0.2595 35 1 0.7757 -8.2055 3.0170 36 1 2.3816 -7.5797 2.5719 37 1 3.1685 -9.8943 2.1571 38 1 1.5627 -10.5201 2.6020 39 1 3.4123 -8.9091 4.4191 40 1 1.8066 -9.5347 4.8647 41 1 3.3749 -11.6915 3.9353 42 1 4.3593 -13.0938 5.5207 43 1 4.5849 -12.5534 7.0955 44 1 2.6874 -3.6848 0.7630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218988667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:27 Heat of formation + Delta-G solvation = -63.768462 kcal Electronic energy + Delta-G solvation = -25523.520401 eV Core-core repulsion = 21667.557740 eV Total energy + Delta-G solvation = -3855.962661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14682 -39.95433 -37.54337 -36.43378 -34.78563 -34.46570 -33.90586 -33.08805 -31.49593 -29.86846 -28.73101 -27.16941 -25.28133 -24.22808 -21.84612 -21.49114 -21.06516 -20.78416 -19.63067 -18.49726 -17.72303 -17.58960 -17.05276 -16.50044 -15.88376 -15.67160 -15.29016 -15.00101 -14.81337 -14.74381 -14.41819 -14.20914 -14.17744 -13.56495 -13.08935 -12.92357 -12.53915 -12.28837 -12.09957 -12.02505 -11.71480 -11.32646 -11.19316 -11.14729 -11.01874 -10.95277 -10.60606 -10.50797 -10.26613 -10.03530 -9.82431 -9.65353 -9.30109 -9.28923 -9.08972 -8.70815 -7.50322 -6.97600 -6.75167 -4.39117 2.45846 2.62391 2.77921 2.94310 3.06719 3.11739 3.12650 3.28359 3.57026 3.92498 4.16680 4.34708 4.50672 4.63093 4.71771 4.88833 5.03210 5.15150 5.20470 5.48885 5.51510 5.65040 5.67477 5.96561 6.02711 6.18024 6.25083 6.38835 6.48551 6.57890 6.69335 6.80065 6.88691 6.98604 7.01999 7.22353 7.22621 7.55747 7.62391 7.64067 7.92325 8.00363 8.09228 8.27480 8.33166 8.51617 8.64518 8.86613 8.93633 10.18321 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.002230 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.846182 B =12554.523105 C =14052.093341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.167 4.167 11 C -0.096 4.096 12 C -0.227 4.227 13 C 0.150 3.850 14 N -0.663 5.663 15 C 0.471 3.529 16 O -0.527 6.527 17 C 0.077 3.923 18 H 0.102 0.898 19 N -0.819 5.819 20 C -0.104 4.104 21 C -0.120 4.120 22 C 0.133 3.867 23 N -0.743 5.743 24 C 0.702 3.298 25 N -0.870 5.870 26 O -0.594 6.594 27 C -0.244 4.244 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.400 0.600 33 H 0.350 0.650 34 H 0.345 0.655 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.396 0.604 43 H 0.414 0.586 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -21.315 3.648 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.186 4.186 11 C -0.115 4.115 12 C -0.248 4.248 13 C 0.058 3.942 14 N -0.306 5.306 15 C 0.256 3.744 16 O -0.403 6.403 17 C -0.039 4.039 18 H 0.120 0.880 19 N -0.348 5.348 20 C -0.143 4.143 21 C -0.158 4.158 22 C 0.009 3.991 23 N -0.400 5.400 24 C 0.400 3.600 25 N -0.438 5.438 26 O -0.472 6.472 27 C -0.265 4.265 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.234 0.766 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.224 0.776 43 H 0.246 0.754 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.392 -20.712 4.514 22.141 hybrid contribution 0.420 0.851 -0.528 1.086 sum 6.811 -19.861 3.986 21.371 Atomic orbital electron populations 1.69841 1.07565 1.29117 1.35348 1.25910 0.94736 1.01330 0.92266 0.86261 0.80922 0.80976 0.78553 1.18424 1.19720 1.20006 1.19549 0.97721 0.90963 1.41094 0.90405 1.17392 0.91026 0.91403 0.88342 1.21377 0.99164 0.96867 1.01211 1.20582 0.98422 0.92852 0.99653 1.20242 1.01051 0.97158 1.06343 1.17464 0.97072 0.83146 0.96534 1.43612 1.09803 1.12825 1.64384 1.21993 0.87331 0.87532 0.77584 1.90728 1.15864 1.82283 1.51419 1.21559 0.96678 0.87353 0.98287 0.88013 1.59216 1.14332 1.47082 1.14159 1.21423 1.01674 0.97628 0.93559 1.21677 1.01356 0.98747 0.93981 1.21307 0.98089 0.84022 0.95695 1.45106 1.66361 1.18255 1.10256 1.16015 0.78228 0.82841 0.82910 1.43001 1.68666 1.15589 1.16547 1.90993 1.62601 1.44406 1.49208 1.20712 1.05582 0.91478 1.08767 0.90902 0.86291 0.89085 0.88460 0.76606 0.83561 0.84277 0.90745 0.90574 0.91325 0.89751 0.91494 0.91470 0.76976 0.77648 0.75440 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.67 10.94 55.55 0.61 -20.06 16 2 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.19 9.05 -37.74 -0.34 -12.53 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.12 3.22 5.57 -106.85 -0.59 2.63 16 10 C -0.17 -4.38 8.69 -38.84 -0.34 -4.71 16 11 C -0.10 -2.34 10.02 -39.69 -0.40 -2.74 16 12 C -0.23 -5.36 8.66 -39.10 -0.34 -5.70 16 13 C 0.15 3.33 6.25 -83.77 -0.52 2.80 16 14 N -0.66 -11.13 5.33 -9.91 -0.05 -11.18 16 15 C 0.47 7.45 6.80 -10.98 -0.07 7.38 16 16 O -0.53 -10.60 14.00 5.56 0.08 -10.52 16 17 C 0.08 0.80 3.15 -68.86 -0.22 0.58 16 18 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 19 N -0.82 -8.01 8.44 -5.65 -0.05 -8.05 16 20 C -0.10 -0.95 4.84 -26.73 -0.13 -1.08 16 21 C -0.12 -0.82 5.22 -26.73 -0.14 -0.96 16 22 C 0.13 1.13 5.67 -4.05 -0.02 1.10 16 23 N -0.74 -5.37 5.56 -65.23 -0.36 -5.74 16 24 C 0.70 6.83 8.84 -86.91 -0.77 6.06 16 25 N -0.87 -4.42 8.88 27.64 0.25 -4.18 16 26 O -0.59 -8.93 17.18 5.29 0.09 -8.84 16 27 C -0.24 -5.84 9.70 -38.68 -0.38 -6.22 16 28 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 29 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 30 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.10 2.25 6.48 -52.48 -0.34 1.91 16 32 H 0.40 5.24 8.82 -40.82 -0.36 4.88 16 33 H 0.35 3.78 8.58 -39.29 -0.34 3.45 16 34 H 0.34 3.34 9.06 -39.29 -0.36 2.98 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 1.62 8.49 -40.82 -0.35 1.27 16 42 H 0.40 0.69 8.84 -40.82 -0.36 0.33 16 43 H 0.41 1.82 8.93 -40.82 -0.36 1.46 16 44 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -34.79 373.12 -9.32 -44.11 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -6.12 Total: 16.87 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -4.35 Total: -11.59 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.39 Total: -49.21 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.79 -9.32 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.657 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds