Wall clock time and date at job start Tue Mar 31 2020 12:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48492 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47123 * 300.00269 * 3 2 1 6 6 H 1.48502 * 109.47009 * 59.99742 * 3 2 1 7 7 C 1.39937 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 196.80852 * 7 2 1 9 9 C 1.41412 * 119.99436 * 16.81067 * 7 2 1 10 10 C 1.40772 * 120.21517 * 25.16130 * 9 7 2 11 11 C 1.37645 * 119.88801 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.31806 * 359.72365 * 11 10 9 13 13 C 1.39253 * 120.43299 * 0.55199 * 12 11 10 14 14 N 1.39935 * 119.94838 * 179.72544 * 13 12 11 15 15 C 1.34774 * 120.00002 * 325.52498 * 14 13 12 16 16 O 1.21282 * 120.00214 * 354.89758 * 15 14 13 17 17 C 1.50703 * 119.99693 * 174.89651 * 15 14 13 18 18 H 1.08996 * 109.46992 * 319.99990 * 17 15 14 19 19 N 1.46904 * 109.47003 * 200.00055 * 17 15 14 20 20 C 1.52997 * 109.47098 * 80.00495 * 17 15 14 21 21 C 1.53003 * 109.47153 * 184.99902 * 20 17 15 22 22 C 1.52996 * 109.47302 * 179.97438 * 21 20 17 23 23 N 1.46493 * 109.47207 * 179.97438 * 22 21 20 24 24 C 1.34779 * 119.99974 * 180.02562 * 23 22 21 25 25 N 1.34784 * 120.00018 * 179.97438 * 24 23 22 26 26 O 1.21581 * 120.00139 * 0.02562 * 24 23 22 27 27 C 1.38281 * 120.09974 * 359.44712 * 13 12 11 28 28 H 0.96994 * 119.99616 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.05656 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84021 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.78467 * 180.27367 * 12 11 10 32 32 H 0.97004 * 119.99763 * 145.52643 * 14 13 12 33 33 H 1.00902 * 110.99713 * 300.00614 * 19 17 15 34 34 H 1.00897 * 111.00075 * 63.95152 * 19 17 15 35 35 H 1.09001 * 109.47815 * 64.99494 * 20 17 15 36 36 H 1.09007 * 109.46624 * 304.99537 * 20 17 15 37 37 H 1.08998 * 109.47224 * 59.99661 * 21 20 17 38 38 H 1.08999 * 109.46931 * 299.99632 * 21 20 17 39 39 H 1.08999 * 109.47266 * 299.99964 * 22 21 20 40 40 H 1.09001 * 109.47302 * 59.99815 * 22 21 20 41 41 H 0.96997 * 120.00365 * 0.02562 * 23 22 21 42 42 H 0.96999 * 119.99581 * 0.02562 * 25 24 23 43 43 H 0.96995 * 119.99743 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.15927 * 180.25317 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2710 9 6 1.3462 -2.4105 -0.3531 10 6 0.2111 -2.3741 -1.1849 11 6 -0.4282 -3.5448 -1.5245 12 6 0.0433 -4.7602 -1.0563 13 6 1.1616 -4.8113 -0.2281 14 7 1.6259 -6.0442 0.2437 15 6 0.7514 -7.0296 0.5276 16 8 -0.4413 -6.8192 0.4632 17 6 1.2557 -8.3930 0.9252 18 1 2.1208 -8.6525 0.3151 19 7 0.1943 -9.3873 0.7179 20 6 1.6585 -8.3774 2.4011 21 6 2.2857 -9.7225 2.7729 22 6 2.6891 -9.7067 4.2486 23 7 3.2891 -10.9948 4.6047 24 6 3.7221 -11.2118 5.8624 25 7 4.2737 -12.3972 6.1902 26 8 3.6142 -10.3387 6.7016 27 6 1.8175 -3.6460 0.1241 28 1 -0.4849 0.8400 0.0004 29 1 -0.1580 -1.4291 -1.5553 30 1 -1.2988 -3.5160 -2.1630 31 1 -0.4624 -5.6740 -1.3317 32 1 2.5771 -6.1895 0.3664 33 1 -0.6194 -9.1686 1.2730 34 1 -0.0445 -9.4628 -0.2595 35 1 0.7757 -8.2055 3.0170 36 1 2.3816 -7.5797 2.5719 37 1 3.1685 -9.8943 2.1571 38 1 1.5627 -10.5201 2.6020 39 1 3.4123 -8.9091 4.4191 40 1 1.8066 -9.5347 4.8647 41 1 3.3749 -11.6915 3.9353 42 1 4.3593 -13.0938 5.5207 43 1 4.5849 -12.5534 7.0955 44 1 2.6874 -3.6848 0.7630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218988667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:26 Heat of formation + Delta-G solvation = -93.284437 kcal Electronic energy + Delta-G solvation = -25524.800309 eV Core-core repulsion = 21667.557740 eV Total energy + Delta-G solvation = -3857.242570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43079 -40.77372 -39.21262 -37.36586 -36.21508 -35.56957 -34.85848 -34.55830 -32.19303 -31.79373 -30.32330 -28.13539 -27.20195 -25.26068 -23.08897 -22.73465 -22.27306 -21.96606 -21.00328 -19.44725 -19.14409 -18.43827 -18.06779 -17.56876 -17.25549 -16.78821 -16.67934 -16.48202 -15.94354 -15.72958 -15.55908 -15.37387 -15.12064 -14.84418 -14.64289 -14.42056 -14.11031 -13.56677 -13.27467 -13.05005 -12.95010 -12.88768 -12.75834 -12.73195 -12.26012 -11.98857 -11.94063 -11.67786 -11.49477 -11.47957 -11.18586 -11.11117 -10.79618 -10.71236 -9.92467 -9.79643 -9.44181 -8.78763 -8.61950 -6.37868 0.83372 0.94574 1.38950 1.47647 1.54526 1.72160 2.02373 2.19168 2.20257 2.28405 2.73685 3.45659 3.65428 3.70665 3.77556 3.89887 4.05972 4.30559 4.38778 4.43850 4.48899 4.62942 4.74410 4.83921 4.96412 4.99110 5.02364 5.11471 5.19763 5.31670 5.32465 5.40241 5.55517 5.72876 5.80966 5.95075 5.97235 6.06583 6.07349 6.09136 6.27107 6.38004 6.60666 6.70963 6.91011 6.96692 7.16221 7.27135 7.69714 8.32937 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.002230 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.846182 B =12554.523105 C =14052.093341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.093 3.907 10 C -0.195 4.195 11 C -0.100 4.100 12 C -0.238 4.238 13 C 0.161 3.839 14 N -0.656 5.656 15 C 0.469 3.531 16 O -0.571 6.571 17 C 0.095 3.905 18 H 0.135 0.865 19 N -0.807 5.807 20 C -0.104 4.104 21 C -0.101 4.101 22 C 0.135 3.865 23 N -0.729 5.729 24 C 0.693 3.307 25 N -0.848 5.848 26 O -0.654 6.654 27 C -0.255 4.255 28 H 0.288 0.712 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.346 0.654 34 H 0.348 0.652 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.415 0.585 42 H 0.415 0.585 43 H 0.419 0.581 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 -23.270 3.456 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.090 3.910 10 C -0.215 4.215 11 C -0.119 4.119 12 C -0.259 4.259 13 C 0.067 3.933 14 N -0.301 5.301 15 C 0.256 3.744 16 O -0.450 6.450 17 C -0.022 4.022 18 H 0.153 0.847 19 N -0.335 5.335 20 C -0.143 4.143 21 C -0.138 4.138 22 C 0.010 3.990 23 N -0.386 5.386 24 C 0.391 3.609 25 N -0.417 5.417 26 O -0.537 6.537 27 C -0.277 4.277 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.258 0.742 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.252 0.748 42 H 0.246 0.754 43 H 0.251 0.749 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.178 -22.785 4.285 24.585 hybrid contribution -0.171 1.291 -0.449 1.377 sum 8.007 -21.494 3.836 23.256 Atomic orbital electron populations 1.69907 1.09177 1.30523 1.35769 1.26833 0.95488 1.04781 0.91176 0.85111 0.79520 0.75967 0.78809 1.17760 1.18960 1.19301 1.19842 0.98101 0.91980 1.42499 0.90067 1.17789 0.91572 0.92807 0.88851 1.21303 1.00425 0.96830 1.02966 1.20814 0.98734 0.92756 0.99596 1.20403 1.01758 0.96895 1.06845 1.17501 0.95866 0.84956 0.94928 1.43608 1.11287 1.11173 1.64061 1.23195 0.86564 0.88833 0.75810 1.90710 1.17992 1.83210 1.53054 1.21669 0.97584 0.83549 0.99362 0.84711 1.59270 1.14131 1.45795 1.14317 1.21432 1.01286 0.99245 0.92313 1.21512 1.02160 0.97292 0.92879 1.21188 0.96982 0.84326 0.96496 1.44897 1.65430 1.18331 1.09981 1.16320 0.78338 0.83275 0.82962 1.42785 1.66974 1.14552 1.17389 1.90954 1.65047 1.46641 1.51008 1.20896 1.06322 0.91384 1.09095 0.90170 0.87922 0.87473 0.87996 0.74226 0.84125 0.83934 0.92452 0.90269 0.88950 0.89218 0.92817 0.93516 0.74785 0.75377 0.74858 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.25 10.94 21.83 0.24 -44.01 16 2 C 0.03 1.62 5.16 85.25 0.44 2.06 16 3 Si 0.99 38.24 29.59 68.60 2.03 40.27 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.49 -26.58 9.05 23.46 0.21 -26.36 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 9 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 10 C -0.20 -10.65 8.69 22.75 0.20 -10.45 16 11 C -0.10 -4.99 10.02 22.20 0.22 -4.77 16 12 C -0.24 -11.28 8.66 22.58 0.20 -11.09 16 13 C 0.16 7.10 6.25 38.10 0.24 7.34 16 14 N -0.66 -20.94 5.33 -303.65 -1.62 -22.55 16 15 C 0.47 14.05 6.80 87.66 0.60 14.64 16 16 O -0.57 -22.62 14.00 -3.04 -0.04 -22.66 16 17 C 0.09 1.68 3.15 44.17 0.14 1.82 16 18 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 19 N -0.81 -13.68 8.44 -171.80 -1.45 -15.13 16 20 C -0.10 -1.66 4.84 30.59 0.15 -1.51 16 21 C -0.10 -1.07 5.22 30.59 0.16 -0.92 16 22 C 0.13 2.10 5.67 86.38 0.49 2.59 16 23 N -0.73 -9.05 5.56 -478.55 -2.66 -11.71 16 24 C 0.69 12.67 8.84 179.05 1.58 14.25 16 25 N -0.85 -6.92 8.88 -184.74 -1.64 -8.56 16 26 O -0.65 -19.82 17.18 -3.97 -0.07 -19.88 16 27 C -0.26 -12.32 9.70 22.85 0.22 -12.10 16 28 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 29 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 30 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.10 4.71 6.48 -2.91 -0.02 4.69 16 32 H 0.42 9.92 8.82 -92.71 -0.82 9.10 16 33 H 0.35 6.88 8.58 -89.69 -0.77 6.11 16 34 H 0.35 5.83 9.06 -89.70 -0.81 5.02 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.93 7.75 -2.39 -0.02 0.92 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.42 2.01 8.49 -92.71 -0.79 1.23 16 42 H 0.42 0.23 8.84 -92.71 -0.82 -0.59 16 43 H 0.42 3.00 8.93 -92.71 -0.83 2.17 16 44 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -79.21 373.12 -4.21 -83.43 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -3.72 Total: 40.37 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.72 Total: -19.55 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -7.13 Total: -101.97 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.11 Total: -42.55 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -79.21 -4.21 -83.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.858 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds