Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99968 * 2 1 4 4 H 1.48497 * 109.47338 * 274.98435 * 3 2 1 5 5 H 1.48502 * 109.47167 * 34.99021 * 3 2 1 6 6 H 1.48502 * 109.46898 * 154.98827 * 3 2 1 7 7 C 1.38806 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 186.84745 * 7 2 1 9 9 N 1.36942 * 120.00311 * 6.84502 * 7 2 1 10 10 C 1.47022 * 125.64746 * 353.98347 * 9 7 2 11 11 C 1.54369 * 107.28718 * 181.05608 * 10 9 7 12 12 C 1.55149 * 102.92212 * 22.13873 * 11 10 9 13 13 H 1.09005 * 111.00926 * 82.63955 * 12 11 10 14 14 O 1.42899 * 111.00591 * 206.45342 * 12 11 10 15 15 C 1.35513 * 117.00227 * 206.82329 * 14 12 11 16 16 C 1.39433 * 120.46519 * 179.72319 * 15 14 12 17 17 C 1.38203 * 118.50629 * 179.72607 * 16 15 14 18 18 N 1.32463 * 119.26533 * 0.54539 * 17 16 15 19 19 C 1.32463 * 120.89162 * 359.71714 * 18 17 16 20 20 N 1.38395 * 119.19081 * 179.97438 * 19 18 17 21 21 C 1.47011 * 111.00259 * 123.65634 * 20 19 18 22 22 C 1.53091 * 109.25981 * 177.60785 * 21 20 19 23 23 O 1.43017 * 109.26052 * 56.84541 * 22 21 20 24 24 C 1.43014 * 113.73735 * 301.33426 * 23 22 21 25 25 C 1.47012 * 110.99773 * 0.02562 * 20 19 18 26 26 N 1.32488 * 121.62072 * 0.02562 * 19 18 17 27 27 C 1.47427 * 125.64909 * 173.94070 * 9 7 2 28 28 H 0.97001 * 119.99979 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88069 * 300.44150 * 10 9 7 30 30 H 1.08996 * 109.88148 * 61.44909 * 10 9 7 31 31 H 1.09002 * 110.70493 * 263.78929 * 11 10 9 32 32 H 1.08999 * 110.75259 * 140.50722 * 11 10 9 33 33 H 1.07996 * 120.74930 * 359.97290 * 16 15 14 34 34 H 1.07995 * 120.37061 * 180.28138 * 17 16 15 35 35 H 1.09001 * 109.50784 * 297.54557 * 21 20 19 36 36 H 1.08997 * 109.50717 * 57.66843 * 21 20 19 37 37 H 1.09005 * 109.50604 * 296.91110 * 22 21 20 38 38 H 1.08999 * 109.54301 * 176.80399 * 22 21 20 39 39 H 1.09003 * 109.50844 * 298.72983 * 24 23 22 40 40 H 1.09005 * 109.54035 * 178.62406 * 24 23 22 41 41 H 1.08994 * 109.50806 * 302.32899 * 25 20 19 42 42 H 1.09003 * 109.50272 * 62.41901 * 25 20 19 43 43 H 1.09001 * 110.36348 * 37.07038 * 27 9 7 44 44 H 1.08997 * 110.45783 * 274.79337 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0844 -1.2055 0.1110 9 7 1.3328 -2.3838 -0.1424 10 6 -0.1292 -2.5345 -0.1774 11 6 -0.4317 -4.0411 -0.3240 12 6 0.8656 -4.7085 0.2038 13 1 0.8575 -4.7721 1.2919 14 8 1.0521 -5.9991 -0.3806 15 6 1.7615 -6.9031 0.3377 16 6 1.9821 -8.1862 -0.1613 17 6 2.7160 -9.0739 0.6026 18 7 3.1758 -8.6862 1.7828 19 6 2.9459 -7.4620 2.2336 20 7 3.4425 -7.0944 3.4720 21 6 4.2916 -5.8991 3.3654 22 6 4.7698 -5.4933 4.7620 23 8 5.4572 -6.5938 5.3635 24 6 4.6593 -7.7746 5.4835 25 6 4.1801 -8.2035 4.0941 26 7 2.2512 -6.5813 1.5286 27 6 1.9489 -3.7154 -0.2862 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5629 -2.1584 0.7492 30 1 -0.5381 -1.9872 -1.0267 31 1 -0.6011 -4.3002 -1.3692 32 1 -1.2878 -4.3245 0.2882 33 1 1.5917 -8.4787 -1.1248 34 1 2.9088 -10.0739 0.2432 35 1 5.1533 -6.1197 2.7354 36 1 3.7180 -5.0832 2.9258 37 1 3.9113 -5.2209 5.3759 38 1 5.4454 -4.6416 4.6828 39 1 3.7975 -7.5687 6.1184 40 1 5.2547 -8.5735 5.9258 41 1 3.5252 -9.0698 4.1865 42 1 5.0397 -8.4613 3.4753 43 1 2.8410 -3.7898 0.3357 44 1 2.1974 -3.9095 -1.3296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226754053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = 26.262502 kcal Electronic energy + Delta-G solvation = -27466.646129 eV Core-core repulsion = 23614.587504 eV Total energy + Delta-G solvation = -3852.058625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46390 -39.75220 -38.68837 -36.56932 -35.77637 -33.30903 -32.35235 -31.43973 -30.97042 -29.28652 -27.69584 -27.24539 -25.09860 -24.42333 -23.44550 -23.22807 -20.89007 -20.56436 -20.18428 -18.69065 -17.84202 -16.89603 -16.86773 -16.28935 -15.91700 -15.55163 -15.22775 -15.11235 -14.97391 -14.82696 -14.60734 -14.30691 -14.03461 -13.82159 -13.35424 -12.89330 -12.60194 -12.42462 -12.04995 -11.81545 -11.71476 -11.65177 -11.05878 -10.99675 -10.90957 -10.81641 -10.79537 -10.51721 -10.38995 -10.12509 -9.93297 -9.90069 -9.76099 -9.48407 -9.16196 -8.63476 -8.51337 -6.90399 -5.77611 -3.11101 0.90038 1.17234 2.78699 3.10056 3.38221 3.43589 3.45449 3.62984 3.68989 3.98848 4.45078 4.49402 4.62276 4.78694 4.81042 4.90741 4.92003 5.05656 5.14231 5.23120 5.31294 5.36704 5.38628 5.44098 5.54584 5.63060 5.65374 5.67625 5.72026 5.73442 5.91942 6.17079 6.31451 6.33651 6.39298 6.53969 6.57143 6.70365 6.87449 7.02341 7.42298 7.47489 7.53537 7.75653 8.07585 8.18618 9.15230 9.75213 10.40206 11.34698 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003785 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.294925 B = 7396.521013 C = 9199.872622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.069 3.931 13 H 0.099 0.901 14 O -0.287 6.287 15 C 0.398 3.602 16 C -0.279 4.279 17 C 0.193 3.807 18 N -0.580 5.580 19 C 0.529 3.471 20 N -0.460 5.460 21 C 0.030 3.970 22 C 0.064 3.936 23 O -0.385 6.385 24 C 0.060 3.940 25 C 0.036 3.964 26 N -0.578 5.578 27 C 0.129 3.871 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -19.101 5.796 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.177 4.177 12 C 0.012 3.988 13 H 0.117 0.883 14 O -0.189 6.189 15 C 0.209 3.791 16 C -0.304 4.304 17 C 0.030 3.970 18 N -0.305 5.305 19 C 0.172 3.828 20 N -0.181 5.181 21 C -0.097 4.097 22 C -0.013 4.013 23 O -0.303 6.303 24 C -0.017 4.017 25 C -0.092 4.092 26 N -0.312 5.312 27 C 0.002 3.998 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.190 0.810 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 5.888 -18.404 6.803 20.486 hybrid contribution 0.180 0.544 -1.335 1.453 sum 6.069 -17.860 5.468 19.640 Atomic orbital electron populations 1.69955 1.04953 1.25233 1.56562 1.24824 0.95722 0.97698 1.01881 0.86093 0.78692 0.83403 0.77551 1.21545 1.21671 1.20567 1.19048 0.91124 0.82239 1.43450 0.90332 1.44312 1.01585 1.00741 1.86201 1.21205 0.84581 0.87179 1.01580 1.23101 0.94782 0.98788 1.01045 1.23956 0.98290 0.77585 0.98964 0.88333 1.86300 1.65242 1.23731 1.43616 1.19966 0.85134 0.88087 0.85917 1.21792 1.09951 0.93110 1.05518 1.22782 0.87914 0.98828 0.87483 1.68335 1.27285 1.18173 1.16708 1.20529 0.89140 0.85073 0.88009 1.58565 1.36645 1.07588 1.15290 1.22923 0.95480 0.92021 0.99248 1.22749 0.97746 0.89386 0.91415 1.88001 1.39541 1.21342 1.81456 1.22779 0.95735 0.88067 0.95108 1.22719 0.97985 0.92868 0.95585 1.67581 1.17607 1.37880 1.08141 1.21759 0.94158 0.86121 0.97764 0.93614 0.93382 0.92865 0.91201 0.91384 0.83111 0.80993 0.92783 0.87190 0.91563 0.87387 0.92082 0.87814 0.88424 0.91891 0.93943 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.36 55.49 0.57 -26.20 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.95 29.56 -169.99 -5.02 16.93 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.44 10.26 -15.06 -0.15 -6.59 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.51 3.39 -170.04 -0.58 -16.09 16 10 C 0.18 4.35 5.38 -3.04 -0.02 4.33 16 11 C -0.14 -2.67 6.69 -24.88 -0.17 -2.84 16 12 C 0.07 1.31 3.30 -24.59 -0.08 1.23 16 13 H 0.10 1.96 7.09 -51.93 -0.37 1.59 16 14 O -0.29 -4.93 9.94 -18.23 -0.18 -5.11 16 15 C 0.40 6.22 7.53 -16.72 -0.13 6.10 16 16 C -0.28 -3.36 10.12 -39.15 -0.40 -3.76 16 17 C 0.19 2.05 11.29 -17.29 -0.20 1.86 16 18 N -0.58 -7.49 8.69 -14.00 -0.12 -7.61 16 19 C 0.53 7.75 7.17 -322.87 -2.32 5.43 16 20 N -0.46 -6.06 4.79 -175.11 -0.84 -6.90 16 21 C 0.03 0.37 5.49 -3.72 -0.02 0.35 16 22 C 0.06 0.69 7.01 37.20 0.26 0.95 16 23 O -0.38 -4.33 10.83 -35.23 -0.38 -4.72 16 24 C 0.06 0.55 7.01 37.21 0.26 0.81 16 25 C 0.04 0.38 4.80 -3.71 -0.02 0.36 16 26 N -0.58 -9.43 8.13 -13.99 -0.11 -9.55 16 27 C 0.13 2.80 6.97 -2.53 -0.02 2.79 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 1.27 7.54 -51.93 -0.39 0.88 16 30 H 0.05 1.41 7.36 -51.93 -0.38 1.03 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.98 7.83 -51.93 -0.41 0.57 16 42 H 0.06 0.69 8.01 -51.93 -0.42 0.28 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -31.98 356.57 -10.93 -42.91 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.56 Total: 0.17 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -3.08 Total: 10.79 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -1.08 Total: -66.34 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.56 Total: -9.83 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.98 -10.93 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226754053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.175 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds