Wall clock time and date at job start Tue Mar 31 2020 12:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99968 * 2 1 4 4 H 1.48497 * 109.47338 * 274.98435 * 3 2 1 5 5 H 1.48502 * 109.47167 * 34.99021 * 3 2 1 6 6 H 1.48502 * 109.46898 * 154.98827 * 3 2 1 7 7 C 1.38806 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 186.84745 * 7 2 1 9 9 N 1.36942 * 120.00311 * 6.84502 * 7 2 1 10 10 C 1.47022 * 125.64746 * 353.98347 * 9 7 2 11 11 C 1.54369 * 107.28718 * 181.05608 * 10 9 7 12 12 C 1.55149 * 102.92212 * 22.13873 * 11 10 9 13 13 H 1.09005 * 111.00926 * 82.63955 * 12 11 10 14 14 O 1.42899 * 111.00591 * 206.45342 * 12 11 10 15 15 C 1.35513 * 117.00227 * 206.82329 * 14 12 11 16 16 C 1.39433 * 120.46519 * 179.72319 * 15 14 12 17 17 C 1.38203 * 118.50629 * 179.72607 * 16 15 14 18 18 N 1.32463 * 119.26533 * 0.54539 * 17 16 15 19 19 C 1.32463 * 120.89162 * 359.71714 * 18 17 16 20 20 N 1.38395 * 119.19081 * 179.97438 * 19 18 17 21 21 C 1.47011 * 111.00259 * 123.65634 * 20 19 18 22 22 C 1.53091 * 109.25981 * 177.60785 * 21 20 19 23 23 O 1.43017 * 109.26052 * 56.84541 * 22 21 20 24 24 C 1.43014 * 113.73735 * 301.33426 * 23 22 21 25 25 C 1.47012 * 110.99773 * 0.02562 * 20 19 18 26 26 N 1.32488 * 121.62072 * 0.02562 * 19 18 17 27 27 C 1.47427 * 125.64909 * 173.94070 * 9 7 2 28 28 H 0.97001 * 119.99979 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88069 * 300.44150 * 10 9 7 30 30 H 1.08996 * 109.88148 * 61.44909 * 10 9 7 31 31 H 1.09002 * 110.70493 * 263.78929 * 11 10 9 32 32 H 1.08999 * 110.75259 * 140.50722 * 11 10 9 33 33 H 1.07996 * 120.74930 * 359.97290 * 16 15 14 34 34 H 1.07995 * 120.37061 * 180.28138 * 17 16 15 35 35 H 1.09001 * 109.50784 * 297.54557 * 21 20 19 36 36 H 1.08997 * 109.50717 * 57.66843 * 21 20 19 37 37 H 1.09005 * 109.50604 * 296.91110 * 22 21 20 38 38 H 1.08999 * 109.54301 * 176.80399 * 22 21 20 39 39 H 1.09003 * 109.50844 * 298.72983 * 24 23 22 40 40 H 1.09005 * 109.54035 * 178.62406 * 24 23 22 41 41 H 1.08994 * 109.50806 * 302.32899 * 25 20 19 42 42 H 1.09003 * 109.50272 * 62.41901 * 25 20 19 43 43 H 1.09001 * 110.36348 * 37.07038 * 27 9 7 44 44 H 1.08997 * 110.45783 * 274.79337 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0844 -1.2055 0.1110 9 7 1.3328 -2.3838 -0.1424 10 6 -0.1292 -2.5345 -0.1774 11 6 -0.4317 -4.0411 -0.3240 12 6 0.8656 -4.7085 0.2038 13 1 0.8575 -4.7721 1.2919 14 8 1.0521 -5.9991 -0.3806 15 6 1.7615 -6.9031 0.3377 16 6 1.9821 -8.1862 -0.1613 17 6 2.7160 -9.0739 0.6026 18 7 3.1758 -8.6862 1.7828 19 6 2.9459 -7.4620 2.2336 20 7 3.4425 -7.0944 3.4720 21 6 4.2916 -5.8991 3.3654 22 6 4.7698 -5.4933 4.7620 23 8 5.4572 -6.5938 5.3635 24 6 4.6593 -7.7746 5.4835 25 6 4.1801 -8.2035 4.0941 26 7 2.2512 -6.5813 1.5286 27 6 1.9489 -3.7154 -0.2862 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5629 -2.1584 0.7492 30 1 -0.5381 -1.9872 -1.0267 31 1 -0.6011 -4.3002 -1.3692 32 1 -1.2878 -4.3245 0.2882 33 1 1.5917 -8.4787 -1.1248 34 1 2.9088 -10.0739 0.2432 35 1 5.1533 -6.1197 2.7354 36 1 3.7180 -5.0832 2.9258 37 1 3.9113 -5.2209 5.3759 38 1 5.4454 -4.6416 4.6828 39 1 3.7975 -7.5687 6.1184 40 1 5.2547 -8.5735 5.9258 41 1 3.5252 -9.0698 4.1865 42 1 5.0397 -8.4613 3.4753 43 1 2.8410 -3.7898 0.3357 44 1 2.1974 -3.9095 -1.3296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226754053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:40 Heat of formation + Delta-G solvation = 4.790429 kcal Electronic energy + Delta-G solvation = -27467.577228 eV Core-core repulsion = 23614.587504 eV Total energy + Delta-G solvation = -3852.989724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50824 -40.82635 -39.92314 -38.17378 -36.78442 -34.56285 -34.14905 -32.33901 -32.05536 -31.12709 -29.22401 -28.38616 -26.72493 -25.70675 -24.48081 -24.28682 -22.27841 -21.99406 -21.71856 -19.84627 -19.22578 -18.66166 -17.91120 -17.23609 -16.98271 -16.80787 -16.46966 -16.30346 -16.16191 -15.92254 -15.85380 -15.77186 -15.35233 -15.01042 -14.61155 -14.37410 -14.17410 -13.90266 -13.54786 -13.40401 -12.96553 -12.75640 -12.65347 -12.47625 -12.25134 -12.14312 -12.05182 -12.04074 -11.83191 -11.75076 -11.63697 -11.56847 -10.85062 -10.74635 -10.62177 -10.27568 -9.51111 -8.99191 -7.91319 -5.27980 -0.10252 0.13744 1.45211 1.47274 1.56120 1.68968 1.96555 2.46716 2.65799 2.83799 3.01926 3.27817 3.47953 3.56391 3.70027 3.75152 3.81785 3.91093 3.94289 3.97803 4.08052 4.11914 4.24068 4.27990 4.40177 4.52677 4.53143 4.62484 4.67297 4.70016 4.76146 4.83833 4.86953 4.90936 4.92927 5.14318 5.38153 5.39950 5.54073 5.63490 5.65061 5.90274 6.06241 6.11197 6.22114 7.02880 7.04028 7.67285 8.31806 9.19765 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.003785 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.294925 B = 7396.521013 C = 9199.872622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.187 3.813 11 C -0.124 4.124 12 C 0.092 3.908 13 H 0.088 0.912 14 O -0.289 6.289 15 C 0.365 3.635 16 C -0.268 4.268 17 C 0.202 3.798 18 N -0.579 5.579 19 C 0.513 3.487 20 N -0.471 5.471 21 C 0.036 3.964 22 C 0.069 3.931 23 O -0.396 6.396 24 C 0.060 3.940 25 C 0.041 3.959 26 N -0.606 5.606 27 C 0.131 3.869 28 H 0.250 0.750 29 H 0.017 0.983 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.223 0.777 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -21.422 5.880 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.062 3.938 11 C -0.162 4.162 12 C 0.035 3.965 13 H 0.106 0.894 14 O -0.192 6.192 15 C 0.178 3.822 16 C -0.292 4.292 17 C 0.039 3.961 18 N -0.303 5.303 19 C 0.157 3.843 20 N -0.192 5.192 21 C -0.091 4.091 22 C -0.008 4.008 23 O -0.314 6.314 24 C -0.017 4.017 25 C -0.086 4.086 26 N -0.341 5.341 27 C 0.005 3.995 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.197 0.803 34 H 0.239 0.761 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.924 -20.772 6.900 22.957 hybrid contribution -0.084 1.109 -1.355 1.753 sum 6.840 -19.663 5.545 21.544 Atomic orbital electron populations 1.70159 1.06322 1.25657 1.57384 1.25672 0.96636 1.00974 1.01854 0.85043 0.77870 0.78912 0.77395 1.21266 1.21772 1.19215 1.19410 0.91582 0.83491 1.43336 0.90127 1.44584 1.02462 1.01740 1.86122 1.20951 0.83775 0.90356 0.98692 1.22918 0.95733 0.94990 1.02533 1.23395 0.96633 0.78385 0.98132 0.89415 1.86264 1.66337 1.22809 1.43822 1.20398 0.86354 0.89069 0.86398 1.22173 1.09118 0.91373 1.06541 1.23642 0.86007 1.00321 0.86153 1.68443 1.27053 1.17153 1.17670 1.20777 0.89492 0.85580 0.88491 1.58619 1.37084 1.08458 1.15053 1.22814 0.94702 0.91381 1.00188 1.22741 0.98035 0.89812 0.90198 1.87989 1.40218 1.21928 1.81286 1.22971 0.96256 0.88071 0.94366 1.22778 0.97569 0.92284 0.95961 1.67473 1.18471 1.39213 1.08950 1.21792 0.94838 0.85297 0.97585 0.94052 0.96432 0.95846 0.89747 0.89024 0.80329 0.76060 0.93362 0.89643 0.91574 0.86141 0.91739 0.85003 0.87781 0.92385 0.94444 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 10.36 21.65 0.22 -56.63 16 2 C -0.06 -3.30 5.48 84.86 0.47 -2.84 16 3 Si 0.98 45.77 29.56 68.60 2.03 47.80 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.25 -14.29 10.26 84.03 0.86 -13.42 16 8 H 0.08 4.44 7.84 -2.91 -0.02 4.41 16 9 N -0.62 -33.09 3.39 -691.90 -2.35 -35.44 16 10 C 0.19 9.41 5.38 86.74 0.47 9.88 16 11 C -0.12 -4.74 6.69 31.80 0.21 -4.53 16 12 C 0.09 3.52 3.30 31.98 0.11 3.62 16 13 H 0.09 3.56 7.09 -2.38 -0.02 3.55 16 14 O -0.29 -9.69 9.94 -88.16 -0.88 -10.56 16 15 C 0.37 11.03 7.53 84.85 0.64 11.67 16 16 C -0.27 -5.68 10.12 22.55 0.23 -5.45 16 17 C 0.20 3.57 11.29 84.59 0.95 4.52 16 18 N -0.58 -13.64 8.69 -198.21 -1.72 -15.36 16 19 C 0.51 14.66 7.17 261.51 1.88 16.53 16 20 N -0.47 -12.25 4.79 -707.92 -3.39 -15.64 16 21 C 0.04 0.92 5.49 86.31 0.47 1.39 16 22 C 0.07 1.47 7.01 72.01 0.50 1.97 16 23 O -0.40 -8.40 10.83 -148.98 -1.61 -10.01 16 24 C 0.06 0.98 7.01 72.02 0.50 1.49 16 25 C 0.04 0.80 4.80 86.31 0.41 1.21 16 26 N -0.61 -19.76 8.13 -310.88 -2.53 -22.29 16 27 C 0.13 5.82 6.97 86.85 0.61 6.43 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 29 H 0.02 0.97 7.54 -2.39 -0.02 0.95 16 30 H 0.02 1.30 7.36 -2.39 -0.02 1.28 16 31 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 2.59 7.67 -2.39 -0.02 2.57 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 38 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.10 1.89 7.83 -2.39 -0.02 1.87 16 42 H 0.06 1.19 8.01 -2.39 -0.02 1.18 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -71.36 356.57 -0.92 -72.28 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.00 Total: 13.38 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 8.31 Total: 32.48 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -9.77 Total: -145.36 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -2.49 Total: -20.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.36 -0.92 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226754053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.074 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds