Wall clock time and date at job start Tue Mar 31 2020 12:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00125 * 2 1 4 4 O 1.20827 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00040 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.48945 * 31.45563 * 5 3 2 7 7 C 1.53049 * 109.48423 * 271.39441 * 5 3 2 8 8 N 1.46961 * 109.36404 * 181.63311 * 7 5 3 9 9 C 1.46958 * 110.87936 * 59.31850 * 8 7 5 10 10 C 1.53047 * 109.36413 * 300.68234 * 9 8 7 11 11 N 1.46947 * 109.36625 * 58.40179 * 10 9 8 12 12 C 1.46902 * 111.00117 * 176.80996 * 11 10 9 13 13 C 1.50701 * 109.47010 * 288.80281 * 12 11 10 14 14 C 1.38306 * 119.92851 * 90.00198 * 13 12 11 15 15 C 1.38097 * 120.06390 * 180.02562 * 14 13 12 16 16 C 1.38873 * 119.93487 * 359.97438 * 15 14 13 17 17 O 1.35755 * 120.07060 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99843 * 5.44148 * 17 16 15 19 19 H 1.07995 * 119.99743 * 5.39092 * 18 17 16 20 20 C 1.38648 * 119.99744 * 185.39930 * 18 17 16 21 21 N 1.31564 * 119.99801 * 180.27182 * 20 18 17 22 22 Si 1.86803 * 120.00243 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46946 * 90.00303 * 22 20 18 24 24 H 1.48495 * 109.47218 * 210.00157 * 22 20 18 25 25 H 1.48504 * 109.47139 * 330.00145 * 22 20 18 26 26 C 1.38883 * 119.86199 * 0.25095 * 16 15 14 27 27 C 1.38096 * 119.92942 * 359.50002 * 26 16 15 28 28 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47099 * 300.00712 * 1 2 3 30 30 H 1.09000 * 109.46775 * 60.00443 * 1 2 3 31 31 H 1.09000 * 109.49327 * 301.60059 * 7 5 3 32 32 H 1.09002 * 109.49045 * 61.66521 * 7 5 3 33 33 H 1.00900 * 110.99676 * 295.44970 * 8 7 5 34 34 H 1.08994 * 109.48326 * 60.64934 * 9 8 7 35 35 H 1.08999 * 109.48377 * 180.69305 * 9 8 7 36 36 H 1.08998 * 109.48739 * 298.43067 * 10 9 8 37 37 H 1.09002 * 109.48774 * 178.36918 * 10 9 8 38 38 H 1.09004 * 109.46961 * 168.80266 * 12 11 10 39 39 H 1.08997 * 109.47132 * 48.80547 * 12 11 10 40 40 H 1.08002 * 119.96700 * 359.97438 * 14 13 12 41 41 H 1.08006 * 120.02991 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99436 * 179.72304 * 21 20 18 43 43 H 1.08003 * 120.03092 * 179.72405 * 26 16 15 44 44 H 1.08002 * 119.96916 * 180.22774 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9752 0.4187 -0.5371 7 6 4.0786 1.2662 1.4416 8 7 5.5436 1.3826 1.4391 9 6 5.9692 2.6242 0.7782 10 6 5.4570 2.6328 -0.6639 11 7 3.9921 2.5165 -0.6614 12 6 3.4552 2.5971 -2.0264 13 6 3.5905 4.0086 -2.5368 14 6 4.7352 4.3914 -3.2120 15 6 4.8624 5.6843 -3.6805 16 6 3.8392 6.6001 -3.4735 17 8 3.9615 7.8719 -3.9324 18 6 5.0496 8.1516 -4.6781 19 1 5.7297 7.3610 -4.9585 20 6 5.2951 9.4542 -5.0846 21 7 6.3539 9.7262 -5.8167 22 14 4.1183 10.8215 -4.6000 23 1 4.5476 11.4083 -3.3051 24 1 4.1249 11.8746 -5.6470 25 1 2.7468 10.2688 -4.4626 26 6 2.6930 6.2139 -2.7911 27 6 2.5695 4.9182 -2.3295 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.6480 2.1069 1.9856 32 1 3.7887 0.3332 1.9249 33 1 5.9695 0.5775 1.0050 34 1 5.5601 3.4803 1.3147 35 1 7.0577 2.6814 0.7782 36 1 5.8876 1.7922 -1.2078 37 1 5.7468 3.5659 -1.1472 38 1 2.4031 2.3122 -2.0204 39 1 4.0110 1.9210 -2.6760 40 1 5.5308 3.6788 -3.3723 41 1 5.7567 5.9827 -4.2074 42 1 6.5235 10.6369 -6.1045 43 1 1.8974 6.9252 -2.6247 44 1 1.6769 4.6161 -1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236054283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:24 Heat of formation + Delta-G solvation = -63.444946 kcal Electronic energy + Delta-G solvation = -27139.472811 eV Core-core repulsion = 23251.231427 eV Total energy + Delta-G solvation = -3888.241383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08608 -39.43792 -38.84797 -36.84955 -36.60376 -34.42812 -32.40206 -31.85031 -30.22993 -30.06259 -28.17872 -26.66985 -25.24061 -24.59485 -23.37136 -22.15650 -21.59994 -20.49378 -20.23911 -17.96278 -17.86357 -17.26372 -17.11375 -16.70073 -16.22370 -15.39052 -15.34818 -14.95933 -14.72516 -14.49197 -14.12518 -13.92676 -13.79037 -13.50543 -13.42342 -13.28331 -12.92670 -12.59946 -12.52507 -12.36719 -12.18296 -11.97931 -11.80016 -11.44442 -11.34392 -11.25705 -11.04238 -10.87004 -10.75119 -10.64511 -10.47607 -10.14175 -9.40657 -8.90615 -8.87292 -8.47565 -8.22215 -7.31540 -6.42362 -4.08732 1.94034 2.12363 2.18235 2.33394 3.22172 3.26176 3.41183 3.60890 3.96164 4.23906 4.48239 4.51612 4.55898 4.66393 4.81837 4.83217 4.89812 4.90721 4.94212 5.07296 5.09117 5.16464 5.23272 5.33786 5.35470 5.56934 5.62670 5.66046 5.74148 5.84585 5.90267 6.08478 6.14214 6.34824 6.51631 6.59637 6.72690 6.77158 6.83092 6.99977 7.08381 7.27141 7.32416 7.56385 7.62745 7.79315 8.03735 8.93253 9.56302 10.65336 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.002969 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.582629 B = 9428.129904 C =10245.717218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.476 6.476 5 C 0.057 3.943 6 H 0.069 0.931 7 C 0.073 3.927 8 N -0.677 5.677 9 C 0.055 3.945 10 C 0.019 3.981 11 N -0.509 5.509 12 C 0.108 3.892 13 C -0.168 4.168 14 C -0.068 4.068 15 C -0.222 4.222 16 C 0.163 3.837 17 O -0.217 6.217 18 C -0.389 4.389 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.194 4.194 27 C -0.048 4.048 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.340 0.660 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.116 0.884 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -20.974 12.394 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.303 3.697 4 O -0.359 6.359 5 C -0.054 4.054 6 H 0.087 0.913 7 C -0.058 4.058 8 N -0.305 5.305 9 C -0.075 4.075 10 C -0.110 4.110 11 N -0.236 5.236 12 C -0.018 4.018 13 C -0.170 4.170 14 C -0.086 4.086 15 C -0.241 4.241 16 C 0.110 3.890 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.213 4.213 27 C -0.067 4.067 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.157 0.843 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.134 0.866 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.951 -19.630 13.222 24.405 hybrid contribution -0.349 -0.196 -1.507 1.559 sum -6.300 -19.826 11.716 23.875 Atomic orbital electron populations 1.23269 0.76130 1.03642 1.02764 1.86497 1.23584 1.33618 1.84420 1.23415 0.91471 0.81547 0.73280 1.90715 1.66455 1.36017 1.42755 1.22108 0.88413 0.94215 1.00708 0.91336 1.22085 0.88510 1.03906 0.91252 1.60794 1.06237 1.05393 1.58031 1.22214 1.00405 0.93163 0.91694 1.22980 0.86200 1.02946 0.98892 1.62029 1.10365 1.32008 1.19171 1.20937 0.99511 0.94904 0.86484 1.18973 0.96734 0.94847 1.06410 1.20615 0.95984 0.95305 0.96736 1.21212 1.01097 0.93898 1.07899 1.19153 0.93187 0.84893 0.91721 1.83596 1.43862 1.23898 1.60864 1.20755 1.01344 0.96273 1.28054 0.87704 1.24469 0.96471 0.97395 0.95659 1.69652 1.25787 1.21593 1.34779 0.86183 0.81994 0.80406 0.78345 1.19867 1.20786 1.18326 1.20221 0.97850 0.96825 1.06407 1.20509 0.97745 0.91865 0.96550 0.88107 0.91772 0.91791 0.89057 0.89391 0.84258 0.89375 0.89614 0.94792 0.88120 0.90829 0.94659 0.87750 0.85006 0.91058 0.86574 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.60 10.57 -39.26 -0.41 -4.02 16 3 C 0.46 5.43 5.86 36.01 0.21 5.64 16 4 O -0.48 -7.06 15.29 -18.75 -0.29 -7.34 16 5 C 0.06 0.59 2.46 -68.81 -0.17 0.42 16 6 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 7 C 0.07 0.66 5.98 -3.77 -0.02 0.63 16 8 N -0.68 -5.77 6.91 -113.64 -0.79 -6.56 16 9 C 0.05 0.52 6.72 -3.77 -0.03 0.50 16 10 C 0.02 0.21 5.34 -3.77 -0.02 0.19 16 11 N -0.51 -6.42 4.22 -229.33 -0.97 -7.39 16 12 C 0.11 1.51 4.78 -4.97 -0.02 1.49 16 13 C -0.17 -2.86 5.03 -104.57 -0.53 -3.39 16 14 C -0.07 -1.20 8.08 -39.61 -0.32 -1.52 16 15 C -0.22 -4.76 9.14 -39.40 -0.36 -5.12 16 16 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 17 O -0.22 -5.80 8.59 0.02 0.00 -5.80 16 18 C -0.39 -10.99 9.90 30.88 0.31 -10.68 16 19 H 0.11 3.02 5.52 -52.49 -0.29 2.73 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.47 13.96 55.48 0.77 -24.70 16 22 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.34 2.32 8.89 -39.29 -0.35 1.97 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 1.31 6.06 -51.93 -0.31 1.00 16 38 H 0.07 1.07 5.85 -51.93 -0.30 0.77 16 39 H 0.04 0.45 8.01 -51.93 -0.42 0.04 16 40 H 0.10 1.59 7.91 -52.49 -0.42 1.17 16 41 H 0.13 2.97 5.71 -52.48 -0.30 2.67 16 42 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.44 360.78 -8.30 -39.73 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.17 Total: 4.58 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.02 Total: -10.94 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.98 Total: -38.65 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.70 Total: -17.16 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.44 -8.30 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.710 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds