Wall clock time and date at job start Tue Mar 31 2020 12:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00125 * 2 1 4 4 O 1.20827 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00040 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.48945 * 31.45563 * 5 3 2 7 7 C 1.53049 * 109.48423 * 271.39441 * 5 3 2 8 8 N 1.46961 * 109.36404 * 181.63311 * 7 5 3 9 9 C 1.46958 * 110.87936 * 59.31850 * 8 7 5 10 10 C 1.53047 * 109.36413 * 300.68234 * 9 8 7 11 11 N 1.46947 * 109.36625 * 58.40179 * 10 9 8 12 12 C 1.46902 * 111.00117 * 176.80996 * 11 10 9 13 13 C 1.50701 * 109.47010 * 288.80281 * 12 11 10 14 14 C 1.38306 * 119.92851 * 90.00198 * 13 12 11 15 15 C 1.38097 * 120.06390 * 180.02562 * 14 13 12 16 16 C 1.38873 * 119.93487 * 359.97438 * 15 14 13 17 17 O 1.35755 * 120.07060 * 179.97438 * 16 15 14 18 18 C 1.34834 * 116.99843 * 5.44148 * 17 16 15 19 19 H 1.07995 * 119.99743 * 5.39092 * 18 17 16 20 20 C 1.38648 * 119.99744 * 185.39930 * 18 17 16 21 21 N 1.31564 * 119.99801 * 180.27182 * 20 18 17 22 22 Si 1.86803 * 120.00243 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46946 * 90.00303 * 22 20 18 24 24 H 1.48495 * 109.47218 * 210.00157 * 22 20 18 25 25 H 1.48504 * 109.47139 * 330.00145 * 22 20 18 26 26 C 1.38883 * 119.86199 * 0.25095 * 16 15 14 27 27 C 1.38096 * 119.92942 * 359.50002 * 26 16 15 28 28 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47099 * 300.00712 * 1 2 3 30 30 H 1.09000 * 109.46775 * 60.00443 * 1 2 3 31 31 H 1.09000 * 109.49327 * 301.60059 * 7 5 3 32 32 H 1.09002 * 109.49045 * 61.66521 * 7 5 3 33 33 H 1.00900 * 110.99676 * 295.44970 * 8 7 5 34 34 H 1.08994 * 109.48326 * 60.64934 * 9 8 7 35 35 H 1.08999 * 109.48377 * 180.69305 * 9 8 7 36 36 H 1.08998 * 109.48739 * 298.43067 * 10 9 8 37 37 H 1.09002 * 109.48774 * 178.36918 * 10 9 8 38 38 H 1.09004 * 109.46961 * 168.80266 * 12 11 10 39 39 H 1.08997 * 109.47132 * 48.80547 * 12 11 10 40 40 H 1.08002 * 119.96700 * 359.97438 * 14 13 12 41 41 H 1.08006 * 120.02991 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99436 * 179.72304 * 21 20 18 43 43 H 1.08003 * 120.03092 * 179.72405 * 26 16 15 44 44 H 1.08002 * 119.96916 * 180.22774 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9752 0.4187 -0.5371 7 6 4.0786 1.2662 1.4416 8 7 5.5436 1.3826 1.4391 9 6 5.9692 2.6242 0.7782 10 6 5.4570 2.6328 -0.6639 11 7 3.9921 2.5165 -0.6614 12 6 3.4552 2.5971 -2.0264 13 6 3.5905 4.0086 -2.5368 14 6 4.7352 4.3914 -3.2120 15 6 4.8624 5.6843 -3.6805 16 6 3.8392 6.6001 -3.4735 17 8 3.9615 7.8719 -3.9324 18 6 5.0496 8.1516 -4.6781 19 1 5.7297 7.3610 -4.9585 20 6 5.2951 9.4542 -5.0846 21 7 6.3539 9.7262 -5.8167 22 14 4.1183 10.8215 -4.6000 23 1 4.5476 11.4083 -3.3051 24 1 4.1249 11.8746 -5.6470 25 1 2.7468 10.2688 -4.4626 26 6 2.6930 6.2139 -2.7911 27 6 2.5695 4.9182 -2.3295 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.6480 2.1069 1.9856 32 1 3.7887 0.3332 1.9249 33 1 5.9695 0.5775 1.0050 34 1 5.5601 3.4803 1.3147 35 1 7.0577 2.6814 0.7782 36 1 5.8876 1.7922 -1.2078 37 1 5.7468 3.5659 -1.1472 38 1 2.4031 2.3122 -2.0204 39 1 4.0110 1.9210 -2.6760 40 1 5.5308 3.6788 -3.3723 41 1 5.7567 5.9827 -4.2074 42 1 6.5235 10.6369 -6.1045 43 1 1.8974 6.9252 -2.6247 44 1 1.6769 4.6161 -1.8019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236054283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:22 Heat of formation + Delta-G solvation = -85.778743 kcal Electronic energy + Delta-G solvation = -27140.441277 eV Core-core repulsion = 23251.231427 eV Total energy + Delta-G solvation = -3889.209850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97501 -40.94556 -39.95580 -38.43731 -37.47478 -35.47975 -34.43675 -32.72086 -31.83006 -31.43186 -28.89081 -27.99385 -26.91701 -25.42281 -24.53355 -23.71954 -22.49211 -21.94675 -21.18040 -19.83101 -19.10592 -18.79497 -17.96676 -17.56031 -17.02323 -16.71432 -16.61133 -16.18192 -15.81214 -15.70987 -15.60521 -15.44745 -15.20084 -14.77858 -14.46384 -14.35179 -14.28752 -14.06637 -14.02694 -13.64942 -13.14849 -13.05036 -12.92720 -12.69291 -12.49588 -12.43009 -12.41608 -12.20211 -12.03963 -11.94692 -11.77864 -11.45907 -11.30989 -10.91495 -9.85815 -9.66381 -9.36685 -9.01076 -8.51624 -6.23759 0.53108 0.56547 1.07990 1.30156 1.33886 1.50605 1.56145 2.26857 2.54981 2.85636 3.08400 3.15039 3.27922 3.66330 3.74775 3.84650 3.92581 3.96007 4.11560 4.15073 4.19346 4.30438 4.31058 4.33070 4.40213 4.51323 4.55461 4.59185 4.71501 4.74044 4.82034 4.89743 4.94907 5.12965 5.21535 5.29742 5.33445 5.54053 5.68883 5.73541 5.75630 5.82931 5.88197 5.96311 6.20753 6.42489 6.72396 6.83055 7.57486 8.59938 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019664 B = 0.002969 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.582629 B = 9428.129904 C =10245.717218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.465 3.535 4 O -0.514 6.514 5 C 0.061 3.939 6 H 0.093 0.907 7 C 0.079 3.921 8 N -0.673 5.673 9 C 0.061 3.939 10 C 0.020 3.980 11 N -0.528 5.528 12 C 0.113 3.887 13 C -0.143 4.143 14 C -0.058 4.058 15 C -0.232 4.232 16 C 0.125 3.875 17 O -0.245 6.245 18 C -0.398 4.398 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.194 4.194 27 C -0.049 4.049 28 H 0.134 0.866 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.355 0.645 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.285 0.715 43 H 0.123 0.877 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 -23.989 13.955 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.401 6.401 5 C -0.050 4.050 6 H 0.111 0.889 7 C -0.052 4.052 8 N -0.302 5.302 9 C -0.069 4.069 10 C -0.109 4.109 11 N -0.255 5.255 12 C -0.014 4.014 13 C -0.144 4.144 14 C -0.077 4.077 15 C -0.251 4.251 16 C 0.075 3.925 17 O -0.153 6.153 18 C -0.474 4.474 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.190 1.190 25 H -0.189 1.189 26 C -0.213 4.213 27 C -0.067 4.067 28 H 0.152 0.848 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.641 -22.715 14.805 27.915 hybrid contribution -0.218 0.350 -1.829 1.875 sum -6.859 -22.365 12.976 26.751 Atomic orbital electron populations 1.23539 0.74732 1.05731 1.02422 1.86493 1.24942 1.32511 1.83794 1.23704 0.91986 0.81460 0.72149 1.90703 1.67346 1.37300 1.44720 1.22205 0.87659 0.93763 1.01419 0.88921 1.22068 0.88586 1.04235 0.90296 1.60755 1.05970 1.05534 1.57942 1.22132 1.01223 0.93031 0.90546 1.22989 0.85345 1.02633 0.99893 1.61859 1.11389 1.34150 1.18125 1.20856 1.00038 0.92627 0.87886 1.19421 0.95221 0.96331 1.03453 1.20871 0.97123 0.94204 0.95493 1.21245 1.00169 0.95393 1.08330 1.19615 0.94886 0.84446 0.93510 1.83538 1.43561 1.25734 1.62469 1.20704 1.01657 0.96199 1.28861 0.89952 1.25240 0.98116 0.99516 0.95779 1.69726 1.27541 1.22455 1.36517 0.85261 0.79361 0.77769 0.78597 1.19153 1.19035 1.18941 1.20434 0.97112 0.98033 1.05749 1.20756 0.98770 0.91088 0.96101 0.84829 0.91901 0.92427 0.91158 0.87033 0.82596 0.91516 0.87945 0.92641 0.90332 0.91062 0.92548 0.84475 0.86963 0.90543 0.85904 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.07 10.57 -51.42 -0.54 -6.61 16 3 C 0.47 9.74 5.86 71.24 0.42 10.16 16 4 O -0.51 -14.44 15.29 21.96 0.34 -14.10 16 5 C 0.06 1.06 2.46 44.18 0.11 1.16 16 6 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 7 C 0.08 1.18 5.98 86.31 0.52 1.70 16 8 N -0.67 -9.28 6.91 -513.44 -3.55 -12.83 16 9 C 0.06 1.01 6.72 86.31 0.58 1.59 16 10 C 0.02 0.38 5.34 86.31 0.46 0.84 16 11 N -0.53 -11.85 4.22 -879.46 -3.71 -15.56 16 12 C 0.11 2.80 4.78 85.56 0.41 3.21 16 13 C -0.14 -4.58 5.03 -19.83 -0.10 -4.68 16 14 C -0.06 -2.00 8.08 22.25 0.18 -1.82 16 15 C -0.23 -10.21 9.14 22.39 0.20 -10.01 16 16 C 0.12 6.01 6.65 22.58 0.15 6.16 16 17 O -0.25 -13.66 8.59 -22.84 -0.20 -13.85 16 18 C -0.40 -23.67 9.90 67.92 0.67 -22.99 16 19 H 0.08 5.09 5.52 -2.91 -0.02 5.07 16 20 C 0.01 0.70 5.49 84.83 0.47 1.17 16 21 N -0.92 -55.27 13.96 21.61 0.30 -54.97 16 22 Si 0.97 46.19 28.62 68.60 1.96 48.15 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 26 C -0.19 -8.04 9.99 22.39 0.22 -7.82 16 27 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16 28 H 0.13 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.35 3.33 8.89 -89.69 -0.80 2.54 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.87 6.06 -2.39 -0.01 1.86 16 38 H 0.07 1.86 5.85 -2.39 -0.01 1.85 16 39 H 0.06 1.20 8.01 -2.39 -0.02 1.18 16 40 H 0.14 3.79 7.91 -2.91 -0.02 3.77 16 41 H 0.11 5.36 5.71 -2.91 -0.02 5.35 16 42 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 43 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -71.15 360.78 0.53 -70.62 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.23 Total: 20.45 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 5.70 Total: -21.29 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -6.96 Total: -83.36 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.40 Total: -34.57 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.96 Total: 48.15 kcal Total: -71.15 0.53 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236054283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.156 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds