Wall clock time and date at job start Tue Mar 31 2020 12:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00441 * 2 1 4 4 O 1.20826 * 119.99937 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00176 * 179.97438 * 3 2 1 6 6 H 1.08988 * 110.46103 * 57.58603 * 5 3 2 7 7 C 1.54380 * 110.41047 * 295.17148 * 5 3 2 8 8 C 1.54264 * 105.05848 * 217.37193 * 7 5 3 9 9 H 1.09005 * 110.32139 * 241.00220 * 8 7 5 10 10 N 1.46902 * 110.32530 * 118.89934 * 8 7 5 11 11 C 1.54378 * 105.06105 * 359.97438 * 8 7 5 12 12 N 1.48558 * 104.59335 * 23.85832 * 11 8 7 13 13 C 1.46898 * 110.99756 * 200.95611 * 12 11 8 14 14 C 1.50700 * 109.47562 * 285.41772 * 13 12 11 15 15 C 1.38295 * 119.93095 * 89.99755 * 14 13 12 16 16 C 1.38093 * 120.07100 * 179.97438 * 15 14 13 17 17 C 1.38878 * 119.93129 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.07124 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00024 * 5.53677 * 18 17 16 20 20 H 1.07998 * 119.99446 * 354.93921 * 19 18 17 21 21 C 1.38649 * 119.99744 * 174.94210 * 19 18 17 22 22 N 1.31554 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99593 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46852 * 60.00195 * 23 21 19 25 25 H 1.48492 * 109.47160 * 300.00012 * 23 21 19 26 26 H 1.48507 * 109.46686 * 179.97438 * 23 21 19 27 27 C 1.38881 * 119.86025 * 0.25904 * 17 16 15 28 28 C 1.38097 * 119.92820 * 359.49087 * 27 17 16 29 29 H 1.08999 * 109.46654 * 59.99812 * 1 2 3 30 30 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46949 * 300.00204 * 1 2 3 32 32 H 1.09007 * 110.32300 * 336.26162 * 7 5 3 33 33 H 1.08992 * 110.32395 * 98.37249 * 7 5 3 34 34 H 1.00904 * 110.99979 * 179.97438 * 10 8 7 35 35 H 1.00900 * 110.99725 * 303.94681 * 10 8 7 36 36 H 1.08999 * 110.41129 * 265.07383 * 11 8 7 37 37 H 1.08997 * 110.40803 * 142.63286 * 11 8 7 38 38 H 1.09005 * 109.47224 * 165.41442 * 13 12 11 39 39 H 1.08999 * 109.47039 * 45.42228 * 13 12 11 40 40 H 1.08007 * 119.96622 * 0.02562 * 15 14 13 41 41 H 1.08001 * 120.03829 * 180.02562 * 16 15 14 42 42 H 0.96997 * 120.00005 * 0.02562 * 22 21 19 43 43 H 1.07999 * 120.03683 * 179.72250 * 27 17 16 44 44 H 1.07999 * 119.96345 * 180.28001 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9759 0.7479 -0.8612 7 6 4.1357 0.6886 1.3104 8 6 5.3396 1.5870 1.6616 9 1 6.2577 0.9997 1.6796 10 7 5.1272 2.2402 2.9602 11 6 5.3967 2.6400 0.5341 12 7 4.0115 2.6919 -0.0001 13 6 3.9919 3.2493 -1.3591 14 6 4.2078 4.7394 -1.2941 15 6 5.4902 5.2539 -1.3501 16 6 5.6914 6.6189 -1.2913 17 6 4.6041 7.4752 -1.1763 18 8 4.7985 8.8174 -1.1178 19 6 6.0598 9.2614 -1.2914 20 1 6.8722 8.5561 -1.3859 21 6 6.3136 10.6232 -1.3486 22 7 5.3238 11.4822 -1.2339 23 14 8.0611 11.2383 -1.5884 24 1 8.5966 10.7193 -2.8726 25 1 8.9117 10.7615 -0.4686 26 1 8.0639 12.7231 -1.6155 27 6 3.3177 6.9551 -1.1154 28 6 3.1229 5.5895 -1.1799 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3872 0.7324 2.1016 33 1 4.4615 -0.3398 1.1548 34 1 5.9094 2.8306 3.2002 35 1 4.2643 2.7632 2.9650 36 1 6.0928 2.3265 -0.2439 37 1 5.6860 3.6112 0.9353 38 1 3.0277 3.0418 -1.8232 39 1 4.7855 2.7927 -1.9506 40 1 6.3354 4.5875 -1.4408 41 1 6.6931 7.0201 -1.3355 42 1 4.4165 11.1629 -1.1090 43 1 2.4704 7.6182 -1.0215 44 1 2.1225 5.1847 -1.1372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236197490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:59 Heat of formation + Delta-G solvation = -76.437014 kcal Electronic energy + Delta-G solvation = -26934.484610 eV Core-core repulsion = 23045.679848 eV Total energy + Delta-G solvation = -3888.804762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91581 -39.41381 -38.80012 -36.73738 -36.51262 -34.14250 -32.37674 -31.51482 -30.22182 -29.31581 -28.19738 -27.39977 -25.33018 -24.52117 -22.98120 -21.95129 -20.92400 -20.58469 -20.26156 -18.35717 -17.86550 -16.98615 -16.91152 -16.68053 -16.40114 -15.35875 -15.09977 -15.02279 -14.68299 -14.30219 -14.00555 -13.77481 -13.72148 -13.60762 -13.34970 -13.32504 -12.96943 -12.65757 -12.53655 -12.32152 -11.94136 -11.73386 -11.63230 -11.47274 -11.19164 -11.04430 -10.98833 -10.74774 -10.69730 -10.41166 -10.30694 -10.28268 -9.40789 -8.92028 -8.79612 -8.64836 -8.21913 -7.25529 -6.77812 -4.06974 2.06509 2.14523 2.19400 2.41447 3.22263 3.27007 3.43972 3.86231 4.10801 4.12415 4.27007 4.52965 4.63481 4.69079 4.74026 4.85812 4.93276 5.02565 5.06965 5.08228 5.17153 5.19451 5.26926 5.27165 5.38157 5.55338 5.63662 5.70101 5.72726 5.78807 5.88397 6.13506 6.17107 6.35525 6.54127 6.64690 6.76519 6.86191 6.96015 7.08183 7.25450 7.28177 7.34468 7.55529 7.64838 7.73895 8.39515 8.91493 9.60830 10.66294 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002818 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.503126 B = 9934.044085 C =10737.661205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.478 6.478 5 C 0.065 3.935 6 H 0.088 0.912 7 C -0.103 4.103 8 C 0.089 3.911 9 H 0.092 0.908 10 N -0.839 5.839 11 C 0.001 3.999 12 N -0.481 5.481 13 C 0.104 3.896 14 C -0.175 4.175 15 C -0.064 4.064 16 C -0.232 4.232 17 C 0.160 3.840 18 O -0.203 6.203 19 C -0.472 4.472 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.881 5.881 23 Si 1.096 2.904 24 H -0.282 1.282 25 H -0.281 1.281 26 H -0.273 1.273 27 C -0.197 4.197 28 C -0.047 4.047 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.343 0.657 35 H 0.349 0.651 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.282 0.718 43 H 0.114 0.886 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -24.345 2.747 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.306 3.694 4 O -0.362 6.362 5 C -0.045 4.045 6 H 0.105 0.895 7 C -0.142 4.142 8 C -0.024 4.024 9 H 0.110 0.890 10 N -0.368 5.368 11 C -0.128 4.128 12 N -0.206 5.206 13 C -0.023 4.023 14 C -0.176 4.176 15 C -0.083 4.083 16 C -0.251 4.251 17 C 0.107 3.893 18 O -0.107 6.107 19 C -0.548 4.548 20 H 0.100 0.900 21 C -0.196 4.196 22 N -0.513 5.513 23 Si 0.920 3.080 24 H -0.208 1.208 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.217 4.217 28 C -0.065 4.065 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.174 -22.805 3.259 23.139 hybrid contribution -0.552 -0.992 -1.063 1.556 sum -2.726 -23.797 2.196 24.053 Atomic orbital electron populations 1.23243 0.76319 1.03516 1.02652 1.86481 1.23376 1.33634 1.84589 1.23386 0.91391 0.81449 0.73177 1.90708 1.66422 1.36083 1.42945 1.22248 0.88299 0.93036 1.00931 0.89463 1.22318 0.97963 0.99094 0.94802 1.22206 0.98018 0.94278 0.87891 0.89042 1.59009 1.08668 1.40043 1.29118 1.24106 0.89370 1.01128 0.98244 1.65149 1.19862 1.12459 1.23111 1.21006 1.00720 0.92983 0.87564 1.18931 0.93338 0.92902 1.12412 1.20564 0.95337 0.94369 0.98056 1.21100 0.99390 0.93114 1.11495 1.19250 0.93227 0.84303 0.92562 1.83671 1.31839 1.16968 1.78200 1.22190 0.81974 0.94540 1.56097 0.89955 1.26534 1.07510 0.90257 0.95265 1.70568 1.01924 1.36966 1.41843 0.83114 0.71034 0.76954 0.76947 1.20765 1.20741 1.19749 1.20209 0.94679 0.94970 1.11803 1.20498 0.97796 0.91873 0.96365 0.91948 0.88176 0.91858 0.89648 0.89496 0.84373 0.83729 0.93128 0.88985 0.90719 0.94362 0.87997 0.85584 0.90771 0.86758 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.69 10.56 -39.25 -0.41 -4.10 16 3 C 0.47 5.62 6.89 36.01 0.25 5.87 16 4 O -0.48 -7.38 15.66 -18.75 -0.29 -7.67 16 5 C 0.06 0.67 2.78 -67.23 -0.19 0.48 16 6 H 0.09 0.76 7.99 -51.94 -0.42 0.34 16 7 C -0.10 -0.89 6.28 -25.35 -0.16 -1.05 16 8 C 0.09 0.79 4.19 -66.33 -0.28 0.51 16 9 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 10 N -0.84 -7.98 9.16 -3.49 -0.03 -8.01 16 11 C 0.00 0.01 5.40 -2.18 -0.01 0.00 16 12 N -0.48 -6.05 4.59 -224.96 -1.03 -7.08 16 13 C 0.10 1.45 4.79 -4.98 -0.02 1.43 16 14 C -0.17 -3.03 5.20 -104.58 -0.54 -3.58 16 15 C -0.06 -1.17 8.92 -39.61 -0.35 -1.52 16 16 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 17 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.20 -5.79 9.16 0.03 0.00 -5.79 16 19 C -0.47 -13.39 9.49 30.88 0.29 -13.10 16 20 H 0.08 2.19 5.20 -52.49 -0.27 1.92 16 21 C 0.01 0.27 5.49 -17.52 -0.10 0.18 16 22 N -0.88 -26.57 13.70 55.48 0.76 -25.81 16 23 Si 1.10 23.77 29.92 -169.99 -5.09 18.68 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 C -0.20 -4.31 9.99 -39.39 -0.39 -4.71 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.08 0.83 7.65 -51.93 -0.40 0.44 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.34 2.97 9.08 -39.29 -0.36 2.61 16 35 H 0.35 3.75 8.98 -39.29 -0.35 3.39 16 36 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 37 H 0.09 1.16 7.80 -51.93 -0.41 0.75 16 38 H 0.07 1.07 7.35 -51.93 -0.38 0.69 16 39 H 0.04 0.47 7.71 -51.93 -0.40 0.07 16 40 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 42 H 0.28 8.72 7.97 -40.82 -0.33 8.39 16 43 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 44 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.87 367.55 -8.19 -41.05 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.18 Total: 10.39 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.44 Total: -17.19 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.30 Total: -40.90 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.71 Total: -17.57 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.87 -8.19 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236197490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.383 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds