Wall clock time and date at job start Tue Mar 31 2020 12:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00441 * 2 1 4 4 O 1.20826 * 119.99937 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00176 * 179.97438 * 3 2 1 6 6 H 1.08988 * 110.46103 * 57.58603 * 5 3 2 7 7 C 1.54380 * 110.41047 * 295.17148 * 5 3 2 8 8 C 1.54264 * 105.05848 * 217.37193 * 7 5 3 9 9 H 1.09005 * 110.32139 * 241.00220 * 8 7 5 10 10 N 1.46902 * 110.32530 * 118.89934 * 8 7 5 11 11 C 1.54378 * 105.06105 * 359.97438 * 8 7 5 12 12 N 1.48558 * 104.59335 * 23.85832 * 11 8 7 13 13 C 1.46898 * 110.99756 * 200.95611 * 12 11 8 14 14 C 1.50700 * 109.47562 * 285.41772 * 13 12 11 15 15 C 1.38295 * 119.93095 * 89.99755 * 14 13 12 16 16 C 1.38093 * 120.07100 * 179.97438 * 15 14 13 17 17 C 1.38878 * 119.93129 * 359.97438 * 16 15 14 18 18 O 1.35755 * 120.07124 * 179.97438 * 17 16 15 19 19 C 1.34830 * 117.00024 * 5.53677 * 18 17 16 20 20 H 1.07998 * 119.99446 * 354.93921 * 19 18 17 21 21 C 1.38649 * 119.99744 * 174.94210 * 19 18 17 22 22 N 1.31554 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99593 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46852 * 60.00195 * 23 21 19 25 25 H 1.48492 * 109.47160 * 300.00012 * 23 21 19 26 26 H 1.48507 * 109.46686 * 179.97438 * 23 21 19 27 27 C 1.38881 * 119.86025 * 0.25904 * 17 16 15 28 28 C 1.38097 * 119.92820 * 359.49087 * 27 17 16 29 29 H 1.08999 * 109.46654 * 59.99812 * 1 2 3 30 30 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46949 * 300.00204 * 1 2 3 32 32 H 1.09007 * 110.32300 * 336.26162 * 7 5 3 33 33 H 1.08992 * 110.32395 * 98.37249 * 7 5 3 34 34 H 1.00904 * 110.99979 * 179.97438 * 10 8 7 35 35 H 1.00900 * 110.99725 * 303.94681 * 10 8 7 36 36 H 1.08999 * 110.41129 * 265.07383 * 11 8 7 37 37 H 1.08997 * 110.40803 * 142.63286 * 11 8 7 38 38 H 1.09005 * 109.47224 * 165.41442 * 13 12 11 39 39 H 1.08999 * 109.47039 * 45.42228 * 13 12 11 40 40 H 1.08007 * 119.96622 * 0.02562 * 15 14 13 41 41 H 1.08001 * 120.03829 * 180.02562 * 16 15 14 42 42 H 0.96997 * 120.00005 * 0.02562 * 22 21 19 43 43 H 1.07999 * 120.03683 * 179.72250 * 27 17 16 44 44 H 1.07999 * 119.96345 * 180.28001 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9759 0.7479 -0.8612 7 6 4.1357 0.6886 1.3104 8 6 5.3396 1.5870 1.6616 9 1 6.2577 0.9997 1.6796 10 7 5.1272 2.2402 2.9602 11 6 5.3967 2.6400 0.5341 12 7 4.0115 2.6919 -0.0001 13 6 3.9919 3.2493 -1.3591 14 6 4.2078 4.7394 -1.2941 15 6 5.4902 5.2539 -1.3501 16 6 5.6914 6.6189 -1.2913 17 6 4.6041 7.4752 -1.1763 18 8 4.7985 8.8174 -1.1178 19 6 6.0598 9.2614 -1.2914 20 1 6.8722 8.5561 -1.3859 21 6 6.3136 10.6232 -1.3486 22 7 5.3238 11.4822 -1.2339 23 14 8.0611 11.2383 -1.5884 24 1 8.5966 10.7193 -2.8726 25 1 8.9117 10.7615 -0.4686 26 1 8.0639 12.7231 -1.6155 27 6 3.3177 6.9551 -1.1154 28 6 3.1229 5.5895 -1.1799 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3872 0.7324 2.1016 33 1 4.4615 -0.3398 1.1548 34 1 5.9094 2.8306 3.2002 35 1 4.2643 2.7632 2.9650 36 1 6.0928 2.3265 -0.2439 37 1 5.6860 3.6112 0.9353 38 1 3.0277 3.0418 -1.8232 39 1 4.7855 2.7927 -1.9506 40 1 6.3354 4.5875 -1.4408 41 1 6.6931 7.0201 -1.3355 42 1 4.4165 11.1629 -1.1090 43 1 2.4704 7.6182 -1.0215 44 1 2.1225 5.1847 -1.1372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236197490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:58 Heat of formation + Delta-G solvation = -100.451492 kcal Electronic energy + Delta-G solvation = -26935.525956 eV Core-core repulsion = 23045.679848 eV Total energy + Delta-G solvation = -3889.846108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80991 -40.94748 -39.95180 -38.40994 -37.41133 -35.16956 -34.27843 -32.62100 -31.88671 -30.51655 -29.08038 -28.14492 -27.13848 -25.90052 -23.96454 -23.62979 -22.27091 -21.45861 -21.26996 -20.25513 -18.79063 -18.64364 -17.83779 -17.60299 -17.19432 -17.02089 -16.41911 -15.91225 -15.72860 -15.64580 -15.58901 -15.44525 -15.19872 -14.77218 -14.54806 -14.36860 -14.19255 -14.02408 -13.49559 -13.06419 -12.98152 -12.87338 -12.84832 -12.55106 -12.49183 -12.32153 -12.26960 -12.10586 -11.99269 -11.94200 -11.77757 -11.32358 -11.29421 -10.77051 -9.88867 -9.67925 -9.54793 -9.03549 -8.95289 -6.26412 0.49579 0.55861 1.17608 1.47640 1.58838 1.61854 1.77936 2.35016 2.68400 3.01245 3.20045 3.31452 3.38453 3.50911 3.80113 3.90490 3.91033 4.01878 4.06181 4.12348 4.27445 4.30028 4.31620 4.33521 4.39842 4.50328 4.54600 4.64039 4.69545 4.71118 4.84643 4.95816 5.03701 5.05869 5.18703 5.19909 5.34344 5.47667 5.64546 5.66881 5.74168 5.88030 6.02379 6.22508 6.26074 6.53088 6.78177 6.85014 7.61135 8.48802 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.002818 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.503126 B = 9934.044085 C =10737.661205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.521 6.521 5 C 0.068 3.932 6 H 0.116 0.884 7 C -0.096 4.096 8 C 0.094 3.906 9 H 0.115 0.885 10 N -0.843 5.843 11 C 0.001 3.999 12 N -0.504 5.504 13 C 0.108 3.892 14 C -0.145 4.145 15 C -0.054 4.054 16 C -0.237 4.237 17 C 0.119 3.881 18 O -0.254 6.254 19 C -0.487 4.487 20 H 0.093 0.907 21 C -0.046 4.046 22 N -0.919 5.919 23 Si 1.146 2.854 24 H -0.259 1.259 25 H -0.258 1.258 26 H -0.275 1.275 27 C -0.208 4.208 28 C -0.048 4.048 29 H 0.057 0.943 30 H 0.134 0.866 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.347 0.653 35 H 0.340 0.660 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.144 0.856 41 H 0.120 0.880 42 H 0.259 0.741 43 H 0.108 0.892 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -28.840 2.426 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.408 6.408 5 C -0.042 4.042 6 H 0.133 0.867 7 C -0.135 4.135 8 C -0.019 4.019 9 H 0.132 0.868 10 N -0.372 5.372 11 C -0.128 4.128 12 N -0.229 5.229 13 C -0.019 4.019 14 C -0.146 4.146 15 C -0.072 4.072 16 C -0.256 4.256 17 C 0.069 3.931 18 O -0.162 6.162 19 C -0.563 4.563 20 H 0.111 0.889 21 C -0.242 4.242 22 N -0.553 5.553 23 Si 0.961 3.039 24 H -0.183 1.183 25 H -0.183 1.183 26 H -0.199 1.199 27 C -0.227 4.227 28 C -0.067 4.067 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.161 0.839 41 H 0.138 0.862 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.344 -27.402 2.948 27.562 hybrid contribution -1.323 -0.033 -0.928 1.617 sum -1.668 -27.435 2.019 27.559 Atomic orbital electron populations 1.23502 0.75039 1.05629 1.02162 1.86478 1.24644 1.32584 1.83961 1.23839 0.92201 0.81276 0.71851 1.90697 1.67470 1.37486 1.45178 1.22364 0.87118 0.91767 1.02921 0.86657 1.22343 0.97304 1.00477 0.93357 1.22291 0.99081 0.93824 0.86695 0.86760 1.59050 1.08371 1.40010 1.29750 1.24136 0.88600 1.00750 0.99322 1.64954 1.21368 1.14594 1.22012 1.20957 1.01727 0.90138 0.89121 1.19445 0.92378 0.95244 1.07577 1.20910 0.97039 0.93090 0.96184 1.21238 0.98323 0.94616 1.11436 1.19761 0.95052 0.83650 0.94609 1.83654 1.32084 1.19141 1.81286 1.22602 0.82561 0.95228 1.55896 0.88914 1.28443 1.10955 0.90638 0.94121 1.70710 1.01337 1.37262 1.46035 0.82594 0.66342 0.76371 0.78625 1.18349 1.18255 1.19926 1.20398 0.93856 0.96371 1.12072 1.20742 0.99377 0.90755 0.95814 0.92375 0.84773 0.92499 0.91082 0.86566 0.83973 0.84792 0.91160 0.91156 0.90999 0.91446 0.83865 0.86176 0.93270 0.87412 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -6.34 10.56 -51.39 -0.54 -6.89 16 3 C 0.47 10.13 6.89 71.24 0.49 10.62 16 4 O -0.52 -15.49 15.66 21.96 0.34 -15.15 16 5 C 0.07 1.14 2.78 44.32 0.12 1.26 16 6 H 0.12 1.36 7.99 -2.39 -0.02 1.34 16 7 C -0.10 -1.28 6.28 31.49 0.20 -1.09 16 8 C 0.09 1.30 4.19 45.81 0.19 1.50 16 9 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 10 N -0.84 -14.20 9.16 -164.96 -1.51 -15.71 16 11 C 0.00 0.02 5.40 86.45 0.47 0.49 16 12 N -0.50 -10.98 4.59 -865.64 -3.97 -14.95 16 13 C 0.11 2.58 4.79 85.56 0.41 2.99 16 14 C -0.15 -4.69 5.20 -19.84 -0.10 -4.79 16 15 C -0.05 -1.81 8.92 22.25 0.20 -1.61 16 16 C -0.24 -10.37 9.17 22.39 0.21 -10.16 16 17 C 0.12 6.09 6.65 22.58 0.15 6.24 16 18 O -0.25 -15.49 9.16 -22.79 -0.21 -15.70 16 19 C -0.49 -28.86 9.49 67.92 0.64 -28.22 16 20 H 0.09 5.06 5.20 -2.91 -0.02 5.05 16 21 C -0.05 -2.67 5.49 84.83 0.47 -2.20 16 22 N -0.92 -58.60 13.70 21.61 0.30 -58.30 16 23 Si 1.15 48.31 29.92 68.60 2.05 50.37 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 28 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 29 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.07 1.19 7.65 -2.38 -0.02 1.17 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.35 5.35 9.08 -89.69 -0.81 4.54 16 35 H 0.34 6.87 8.98 -89.69 -0.81 6.07 16 36 H 0.07 0.99 7.75 -2.39 -0.02 0.97 16 37 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 38 H 0.07 1.82 7.35 -2.38 -0.02 1.80 16 39 H 0.07 1.27 7.71 -2.39 -0.02 1.25 16 40 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 42 H 0.26 17.29 7.97 -92.71 -0.74 16.55 16 43 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -77.51 367.55 0.99 -76.52 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.55 Total: 33.97 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 5.08 Total: -34.16 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -5.19 Total: -88.96 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.41 Total: -37.73 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.05 Total: 50.37 kcal Total: -77.51 0.99 -76.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236197490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.930 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds