Wall clock time and date at job start Tue Mar 31 2020 12:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99499 * 2 1 4 4 O 1.20823 * 120.00261 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99936 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.64222 * 328.19168 * 5 3 2 7 7 C 1.54938 * 110.72385 * 205.04099 * 5 3 2 8 8 N 1.48537 * 103.22218 * 204.22448 * 7 5 3 9 9 C 1.46897 * 110.99678 * 159.72113 * 8 7 5 10 10 C 1.50702 * 109.47196 * 170.00107 * 9 8 7 11 11 C 1.38307 * 119.92846 * 269.72652 * 10 9 8 12 12 C 1.38097 * 120.06746 * 179.72585 * 11 10 9 13 13 C 1.38881 * 119.92830 * 0.54370 * 12 11 10 14 14 O 1.35754 * 120.06964 * 179.74925 * 13 12 11 15 15 C 1.34828 * 117.00037 * 185.70001 * 14 13 12 16 16 H 1.07996 * 120.00478 * 354.92371 * 15 14 13 17 17 C 1.38659 * 119.99722 * 174.92344 * 15 14 13 18 18 N 1.31550 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99772 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47443 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47297 * 119.99993 * 19 17 15 22 22 H 1.48500 * 109.47025 * 239.99778 * 19 17 15 23 23 C 1.38878 * 119.86404 * 359.73080 * 13 12 11 24 24 C 1.38094 * 119.93099 * 359.97438 * 23 13 12 25 25 C 1.47900 * 105.82104 * 39.20759 * 8 7 5 26 26 C 1.53991 * 107.06020 * 334.66804 * 25 8 7 27 27 H 1.09002 * 110.30838 * 242.31019 * 26 25 8 28 28 N 1.46893 * 110.31093 * 120.13907 * 26 25 8 29 29 H 1.08994 * 109.47586 * 60.00070 * 1 2 3 30 30 H 1.09001 * 109.47130 * 299.99755 * 1 2 3 31 31 H 1.08995 * 109.46783 * 180.02562 * 1 2 3 32 32 H 1.08998 * 110.66880 * 322.65558 * 7 5 3 33 33 H 1.08996 * 110.66483 * 85.62770 * 7 5 3 34 34 H 1.09007 * 109.47276 * 289.99957 * 9 8 7 35 35 H 1.09006 * 109.47399 * 49.99953 * 9 8 7 36 36 H 1.07997 * 119.96232 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.03962 * 180.27694 * 12 11 10 38 38 H 0.97002 * 120.00166 * 179.97438 * 18 17 15 39 39 H 1.08007 * 120.03514 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96949 * 180.02562 * 24 23 13 41 41 H 1.08997 * 109.91929 * 94.02072 * 25 8 7 42 42 H 1.08999 * 109.92023 * 215.31289 * 25 8 7 43 43 H 1.00907 * 110.99999 * 68.61909 * 28 26 25 44 44 H 1.00907 * 111.00408 * 192.56957 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9957 0.4294 0.5367 7 6 4.0452 2.6147 0.6129 8 7 5.3906 2.8019 0.0118 9 6 5.8069 4.2090 0.0810 10 6 7.2586 4.3230 -0.3073 11 6 8.2413 4.2305 0.6614 12 6 9.5727 4.3289 0.3081 13 6 9.9238 4.5324 -1.0201 14 8 11.2315 4.6347 -1.3700 15 6 11.4989 4.9491 -2.6535 16 1 10.6942 5.0265 -3.3696 17 6 12.8073 5.1731 -3.0542 18 7 13.7876 5.0793 -2.1820 19 14 13.1778 5.6093 -4.8323 20 1 11.9110 5.6520 -5.6059 21 1 13.8378 6.9384 -4.8888 22 1 14.0794 4.5838 -5.4161 23 6 8.9344 4.6306 -1.9897 24 6 7.6051 4.5252 -1.6309 25 6 5.2710 2.3529 -1.3923 26 6 4.1100 1.3427 -1.4462 27 1 4.4742 0.3643 -1.7596 28 7 3.0642 1.8162 -2.3626 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.3794 3.4288 0.3266 33 1 4.1132 2.5384 1.6980 34 1 5.2000 4.8015 -0.6038 35 1 5.6727 4.5781 1.0978 36 1 7.9673 4.0770 1.6947 37 1 10.3398 4.2521 1.0643 38 1 14.7030 5.2356 -2.4624 39 1 9.2043 4.7893 -3.0234 40 1 6.8352 4.6011 -2.3845 41 1 5.0526 3.2042 -2.0370 42 1 6.1966 1.8721 -1.7086 43 1 3.3857 1.7974 -3.3189 44 1 2.2179 1.2773 -2.2550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236343236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:14 Heat of formation + Delta-G solvation = -70.425945 kcal Electronic energy + Delta-G solvation = -26427.055919 eV Core-core repulsion = 22538.511817 eV Total energy + Delta-G solvation = -3888.544102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12088 -39.35407 -38.65845 -36.81709 -36.42438 -34.28457 -32.32311 -31.40584 -30.13585 -29.54753 -27.92077 -27.74563 -25.62138 -24.50035 -22.82331 -21.94793 -21.20568 -20.38792 -19.98944 -18.05633 -17.94732 -17.13647 -17.01777 -16.77456 -16.22339 -15.50624 -15.14131 -14.91522 -14.64088 -14.48442 -14.20265 -13.66956 -13.59580 -13.53263 -13.42018 -13.10924 -12.92408 -12.62530 -12.49919 -12.27373 -11.84054 -11.74164 -11.67916 -11.37521 -11.27997 -11.19627 -11.14710 -10.78474 -10.67307 -10.56728 -10.51074 -10.40034 -9.30238 -9.10626 -8.82546 -8.40683 -8.12882 -7.14514 -6.43633 -4.02253 1.87888 2.24398 2.26785 2.40233 3.12528 3.14263 3.19684 3.89933 3.97676 4.06877 4.17269 4.35425 4.59313 4.72197 4.72696 4.79689 4.92628 5.05419 5.11745 5.16243 5.20506 5.31249 5.32989 5.43540 5.53415 5.67787 5.71164 5.82818 5.86325 5.89521 5.94665 6.03391 6.25280 6.44868 6.63880 6.74181 6.84459 6.92274 6.96238 7.04359 7.10884 7.30124 7.43609 7.46167 7.47574 7.86713 8.01747 9.02279 9.73391 10.74578 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.002317 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.706342 B =12080.230044 C =12657.060919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.488 6.488 5 C -0.085 4.085 6 H 0.117 0.883 7 C 0.052 3.948 8 N -0.504 5.504 9 C 0.106 3.894 10 C -0.177 4.177 11 C -0.053 4.053 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.234 4.234 24 C -0.064 4.064 25 C 0.047 3.953 26 C 0.093 3.907 27 H 0.060 0.940 28 N -0.840 5.840 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.349 0.651 44 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.265 -9.395 2.468 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.311 3.689 4 O -0.373 6.373 5 C -0.105 4.105 6 H 0.135 0.865 7 C -0.076 4.076 8 N -0.229 5.229 9 C -0.021 4.021 10 C -0.178 4.178 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.102 3.898 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.254 4.254 24 C -0.082 4.082 25 C -0.081 4.081 26 C -0.019 4.019 27 H 0.078 0.922 28 N -0.374 5.374 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.163 0.837 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.576 -8.688 3.273 24.411 hybrid contribution -0.595 -0.275 -1.828 1.942 sum -23.171 -8.964 1.445 24.887 Atomic orbital electron populations 1.23268 0.76352 1.03661 1.02659 1.86545 1.23447 1.33733 1.84385 1.23395 0.91590 0.81349 0.72542 1.90678 1.66746 1.36148 1.43745 1.22098 0.87124 1.02321 0.98946 0.86455 1.23130 0.90595 0.94242 0.99662 1.64941 1.23064 1.20959 1.13895 1.20968 0.93343 0.86956 1.00860 1.19028 0.93385 1.11735 0.93670 1.20452 0.91529 0.97220 0.97973 1.20212 0.96003 1.11227 0.93908 1.19404 0.85138 0.92376 0.92905 1.83980 1.18436 1.75829 1.30015 1.21360 0.93788 1.48522 0.82999 0.89074 1.25285 0.94464 0.96767 1.00084 1.70046 0.99899 1.45659 1.34197 0.85655 0.78933 0.78394 0.80483 1.19144 1.20164 1.20180 1.21111 0.92585 1.11575 1.00096 1.20580 0.95137 0.97769 0.94764 1.22962 0.96673 0.97704 0.90777 1.22184 0.92070 0.97774 0.89919 0.92175 1.58865 1.06441 1.61884 1.10171 0.91836 0.91848 0.88133 0.91464 0.89561 0.94225 0.90660 0.87085 0.86607 0.92108 0.85723 0.88014 0.91956 0.89464 0.83677 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.20 10.57 -39.25 -0.41 -3.62 16 3 C 0.47 4.85 5.05 36.01 0.18 5.03 16 4 O -0.49 -6.28 15.46 -18.75 -0.29 -6.57 16 5 C -0.08 -0.83 3.54 -89.91 -0.32 -1.14 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.05 0.57 5.82 -1.90 -0.01 0.56 16 8 N -0.50 -6.40 5.24 -231.89 -1.21 -7.62 16 9 C 0.11 1.46 4.94 -4.98 -0.02 1.43 16 10 C -0.18 -2.99 5.16 -104.57 -0.54 -3.53 16 11 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 12 C -0.19 -4.11 9.99 -39.39 -0.39 -4.51 16 13 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 14 O -0.18 -5.13 9.76 0.04 0.00 -5.13 16 15 C -0.39 -10.92 9.49 30.89 0.29 -10.62 16 16 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 17 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 18 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 19 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 24 C -0.06 -1.15 9.05 -39.61 -0.36 -1.51 16 25 C 0.05 0.56 5.53 -2.76 -0.02 0.55 16 26 C 0.09 0.89 4.06 -66.36 -0.27 0.63 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 N -0.84 -7.74 8.70 -3.52 -0.03 -7.77 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.85 7.12 -51.93 -0.37 0.48 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.54 7.68 -51.93 -0.40 0.15 16 35 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.71 5.64 -52.48 -0.30 2.42 16 40 H 0.10 1.61 7.65 -52.49 -0.40 1.21 16 41 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.35 2.66 9.08 -39.29 -0.36 2.30 16 44 H 0.34 2.93 7.25 -39.29 -0.28 2.65 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -32.31 364.40 -8.31 -40.61 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.09 Total: 7.82 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.49 Total: -14.14 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.49 Total: -40.00 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.70 Total: -15.31 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.31 -8.31 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236343236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.812 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds