Wall clock time and date at job start Tue Mar 31 2020 12:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99499 * 2 1 4 4 O 1.20823 * 120.00261 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99936 * 180.02562 * 3 2 1 6 6 H 1.09001 * 110.64222 * 328.19168 * 5 3 2 7 7 C 1.54938 * 110.72385 * 205.04099 * 5 3 2 8 8 N 1.48537 * 103.22218 * 204.22448 * 7 5 3 9 9 C 1.46897 * 110.99678 * 159.72113 * 8 7 5 10 10 C 1.50702 * 109.47196 * 170.00107 * 9 8 7 11 11 C 1.38307 * 119.92846 * 269.72652 * 10 9 8 12 12 C 1.38097 * 120.06746 * 179.72585 * 11 10 9 13 13 C 1.38881 * 119.92830 * 0.54370 * 12 11 10 14 14 O 1.35754 * 120.06964 * 179.74925 * 13 12 11 15 15 C 1.34828 * 117.00037 * 185.70001 * 14 13 12 16 16 H 1.07996 * 120.00478 * 354.92371 * 15 14 13 17 17 C 1.38659 * 119.99722 * 174.92344 * 15 14 13 18 18 N 1.31550 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99772 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47443 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47297 * 119.99993 * 19 17 15 22 22 H 1.48500 * 109.47025 * 239.99778 * 19 17 15 23 23 C 1.38878 * 119.86404 * 359.73080 * 13 12 11 24 24 C 1.38094 * 119.93099 * 359.97438 * 23 13 12 25 25 C 1.47900 * 105.82104 * 39.20759 * 8 7 5 26 26 C 1.53991 * 107.06020 * 334.66804 * 25 8 7 27 27 H 1.09002 * 110.30838 * 242.31019 * 26 25 8 28 28 N 1.46893 * 110.31093 * 120.13907 * 26 25 8 29 29 H 1.08994 * 109.47586 * 60.00070 * 1 2 3 30 30 H 1.09001 * 109.47130 * 299.99755 * 1 2 3 31 31 H 1.08995 * 109.46783 * 180.02562 * 1 2 3 32 32 H 1.08998 * 110.66880 * 322.65558 * 7 5 3 33 33 H 1.08996 * 110.66483 * 85.62770 * 7 5 3 34 34 H 1.09007 * 109.47276 * 289.99957 * 9 8 7 35 35 H 1.09006 * 109.47399 * 49.99953 * 9 8 7 36 36 H 1.07997 * 119.96232 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.03962 * 180.27694 * 12 11 10 38 38 H 0.97002 * 120.00166 * 179.97438 * 18 17 15 39 39 H 1.08007 * 120.03514 * 179.97438 * 23 13 12 40 40 H 1.07999 * 119.96949 * 180.02562 * 24 23 13 41 41 H 1.08997 * 109.91929 * 94.02072 * 25 8 7 42 42 H 1.08999 * 109.92023 * 215.31289 * 25 8 7 43 43 H 1.00907 * 110.99999 * 68.61909 * 28 26 25 44 44 H 1.00907 * 111.00408 * 192.56957 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9957 0.4294 0.5367 7 6 4.0452 2.6147 0.6129 8 7 5.3906 2.8019 0.0118 9 6 5.8069 4.2090 0.0810 10 6 7.2586 4.3230 -0.3073 11 6 8.2413 4.2305 0.6614 12 6 9.5727 4.3289 0.3081 13 6 9.9238 4.5324 -1.0201 14 8 11.2315 4.6347 -1.3700 15 6 11.4989 4.9491 -2.6535 16 1 10.6942 5.0265 -3.3696 17 6 12.8073 5.1731 -3.0542 18 7 13.7876 5.0793 -2.1820 19 14 13.1778 5.6093 -4.8323 20 1 11.9110 5.6520 -5.6059 21 1 13.8378 6.9384 -4.8888 22 1 14.0794 4.5838 -5.4161 23 6 8.9344 4.6306 -1.9897 24 6 7.6051 4.5252 -1.6309 25 6 5.2710 2.3529 -1.3923 26 6 4.1100 1.3427 -1.4462 27 1 4.4742 0.3643 -1.7596 28 7 3.0642 1.8162 -2.3626 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.3794 3.4288 0.3266 33 1 4.1132 2.5384 1.6980 34 1 5.2000 4.8015 -0.6038 35 1 5.6727 4.5781 1.0978 36 1 7.9673 4.0770 1.6947 37 1 10.3398 4.2521 1.0643 38 1 14.7030 5.2356 -2.4624 39 1 9.2043 4.7893 -3.0234 40 1 6.8352 4.6011 -2.3845 41 1 5.0526 3.2042 -2.0370 42 1 6.1966 1.8721 -1.7086 43 1 3.3857 1.7974 -3.3189 44 1 2.2179 1.2773 -2.2550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236343236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:13 Heat of formation + Delta-G solvation = -93.877089 kcal Electronic energy + Delta-G solvation = -26428.072837 eV Core-core repulsion = 22538.511817 eV Total energy + Delta-G solvation = -3889.561020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90806 -40.81965 -39.84544 -38.24806 -37.38933 -35.29050 -34.25011 -32.45316 -31.74585 -30.73113 -28.77151 -28.54204 -27.45093 -25.78958 -23.76067 -23.52571 -22.31216 -21.70008 -20.84146 -19.80009 -18.85556 -18.74347 -17.84558 -17.71285 -17.05169 -16.42518 -16.40251 -16.22153 -16.03715 -15.88626 -15.45557 -15.30244 -14.97586 -14.61037 -14.36988 -14.23744 -14.09404 -13.99540 -13.73670 -13.52592 -13.05326 -12.95196 -12.72824 -12.58414 -12.45467 -12.36710 -12.17264 -12.10818 -12.08608 -11.89737 -11.79317 -11.49090 -11.13517 -10.78752 -9.81929 -9.73404 -9.42281 -8.86948 -8.45654 -6.13372 0.64536 0.70520 1.10535 1.35539 1.43661 1.53746 1.66828 2.18547 2.77345 3.04090 3.26915 3.29846 3.37308 3.54532 3.62669 3.89462 4.06040 4.07738 4.18160 4.24847 4.28001 4.32484 4.34234 4.41573 4.44776 4.64074 4.68189 4.71268 4.73198 4.82053 4.88518 4.91514 4.97451 5.12094 5.17366 5.33334 5.34712 5.59427 5.74595 5.75640 5.89239 6.00854 6.04173 6.05660 6.26830 6.34326 6.72333 6.99353 7.81348 8.77895 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028284 B = 0.002317 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.706342 B =12080.230044 C =12657.060919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.477 3.523 4 O -0.517 6.517 5 C -0.084 4.084 6 H 0.134 0.866 7 C 0.055 3.945 8 N -0.511 5.511 9 C 0.108 3.892 10 C -0.150 4.150 11 C -0.046 4.046 12 C -0.205 4.205 13 C 0.114 3.886 14 O -0.234 6.234 15 C -0.411 4.411 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.242 4.242 24 C -0.060 4.060 25 C 0.046 3.954 26 C 0.098 3.902 27 H 0.075 0.925 28 N -0.848 5.848 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.272 0.728 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.357 0.643 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.430 -10.304 2.251 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.319 3.681 4 O -0.405 6.405 5 C -0.104 4.104 6 H 0.152 0.848 7 C -0.072 4.072 8 N -0.235 5.235 9 C -0.019 4.019 10 C -0.151 4.151 11 C -0.064 4.064 12 C -0.224 4.224 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.487 4.487 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.261 4.261 24 C -0.078 4.078 25 C -0.083 4.083 26 C -0.014 4.014 27 H 0.093 0.907 28 N -0.382 5.382 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.164 0.836 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.172 0.828 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.810 -9.626 3.071 27.717 hybrid contribution 0.011 -0.084 -1.579 1.581 sum -25.799 -9.710 1.492 27.606 Atomic orbital electron populations 1.23546 0.74776 1.05629 1.02616 1.86534 1.24980 1.32783 1.83855 1.23410 0.91685 0.81305 0.71672 1.90672 1.67398 1.37147 1.45284 1.22124 0.87027 1.02200 0.99027 0.84777 1.23103 0.89201 0.94535 1.00379 1.64858 1.24327 1.19784 1.14481 1.20956 0.90719 0.88116 1.02116 1.19486 0.95288 1.07498 0.92819 1.20835 0.90003 0.95579 1.00033 1.20461 0.97701 1.11368 0.92856 1.19942 0.84565 0.94400 0.94727 1.83944 1.20860 1.78766 1.30465 1.21835 0.94591 1.48799 0.83456 0.88193 1.26584 0.93908 0.96454 1.05263 1.70190 1.00448 1.48387 1.36928 0.84530 0.79240 0.78267 0.74172 1.17508 1.19421 1.19320 1.21186 0.93706 1.11876 0.99308 1.20866 0.94130 0.96575 0.96237 1.22952 0.97145 0.97974 0.90220 1.22101 0.91438 0.97714 0.90117 0.90706 1.58826 1.06532 1.62120 1.10747 0.91785 0.92052 0.85216 0.92873 0.88217 0.93614 0.88787 0.83560 0.86976 0.91896 0.86609 0.85176 0.92614 0.90574 0.82767 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.37 -5.47 10.57 -51.40 -0.54 -6.01 16 3 C 0.48 8.69 5.05 71.24 0.36 9.05 16 4 O -0.52 -12.35 15.46 21.97 0.34 -12.01 16 5 C -0.08 -1.39 3.54 -10.33 -0.04 -1.42 16 6 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 7 C 0.06 1.06 5.82 86.65 0.50 1.57 16 8 N -0.51 -11.30 5.24 -887.57 -4.65 -15.95 16 9 C 0.11 2.59 4.94 85.56 0.42 3.01 16 10 C -0.15 -4.65 5.16 -19.83 -0.10 -4.75 16 11 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 12 C -0.20 -8.77 9.99 22.39 0.22 -8.55 16 13 C 0.11 5.72 6.65 22.58 0.15 5.87 16 14 O -0.23 -14.20 9.76 -22.76 -0.22 -14.42 16 15 C -0.41 -24.10 9.49 67.92 0.64 -23.45 16 16 H 0.10 5.40 5.21 -2.91 -0.02 5.39 16 17 C -0.02 -1.42 5.49 84.84 0.47 -0.96 16 18 N -0.92 -56.96 13.67 21.61 0.30 -56.67 16 19 Si 1.02 43.17 29.55 68.60 2.03 45.20 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 C -0.24 -10.56 9.17 22.39 0.21 -10.35 16 24 C -0.06 -2.05 9.05 22.25 0.20 -1.85 16 25 C 0.05 0.97 5.53 86.45 0.48 1.44 16 26 C 0.10 1.63 4.06 45.80 0.19 1.82 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 N -0.85 -13.65 8.70 -165.05 -1.44 -15.08 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.13 -2.39 -0.02 0.62 16 31 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.05 1.20 7.12 -2.39 -0.02 1.19 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.08 7.68 -2.38 -0.02 1.07 16 35 H 0.09 1.97 8.02 -2.38 -0.02 1.95 16 36 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 37 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 40 H 0.13 3.75 7.65 -2.91 -0.02 3.73 16 41 H 0.06 1.26 6.90 -2.39 -0.02 1.24 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.36 4.66 9.08 -89.69 -0.81 3.85 16 44 H 0.34 5.16 7.25 -89.69 -0.65 4.51 16 Total: -1.00 -74.28 364.40 0.51 -73.77 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.42 Total: 29.62 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 5.12 Total: -28.45 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -5.79 Total: -87.70 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.43 Total: -32.45 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.28 0.51 -73.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236343236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.104 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds