Wall clock time and date at job start Tue Mar 31 2020 12:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34237 * 116.99804 * 2 1 4 4 O 1.20829 * 119.99521 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00237 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.78130 * 303.25218 * 5 3 2 7 7 C 1.54944 * 110.72019 * 66.49588 * 5 3 2 8 8 N 1.48534 * 103.22325 * 155.77283 * 7 5 3 9 9 C 1.46891 * 111.00126 * 200.28014 * 8 7 5 10 10 C 1.50699 * 109.47144 * 47.52378 * 9 8 7 11 11 C 1.38300 * 119.92915 * 269.72726 * 10 9 8 12 12 C 1.38109 * 120.06977 * 179.72278 * 11 10 9 13 13 C 1.38884 * 119.92502 * 0.53009 * 12 11 10 14 14 O 1.35749 * 120.06798 * 179.72866 * 13 12 11 15 15 C 1.34832 * 117.00083 * 174.48646 * 14 13 12 16 16 H 1.07992 * 120.00171 * 5.04844 * 15 14 13 17 17 C 1.38653 * 119.99612 * 185.05319 * 15 14 13 18 18 N 1.31557 * 119.99777 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00571 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47395 * 89.99668 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00098 * 19 17 15 22 22 H 1.48507 * 109.46730 * 330.00011 * 19 17 15 23 23 C 1.38881 * 119.86398 * 359.74064 * 13 12 11 24 24 C 1.38092 * 119.92895 * 0.02562 * 23 13 12 25 25 C 1.47898 * 105.82143 * 320.79608 * 8 7 5 26 26 C 1.53996 * 107.05969 * 25.33025 * 25 8 7 27 27 H 1.08998 * 110.30893 * 117.69480 * 26 25 8 28 28 N 1.46906 * 110.30668 * 239.76046 * 26 25 8 29 29 H 1.09004 * 109.46455 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47253 * 299.99886 * 1 2 3 31 31 H 1.08996 * 109.47318 * 59.99756 * 1 2 3 32 32 H 1.09004 * 110.66747 * 37.34555 * 7 5 3 33 33 H 1.08993 * 110.67041 * 274.20612 * 7 5 3 34 34 H 1.09003 * 109.47709 * 167.52585 * 9 8 7 35 35 H 1.09001 * 109.47526 * 287.52439 * 9 8 7 36 36 H 1.07994 * 119.96939 * 359.97438 * 11 10 9 37 37 H 1.07990 * 120.04013 * 180.27542 * 12 11 10 38 38 H 0.96999 * 120.00166 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03272 * 179.97438 * 23 13 12 40 40 H 1.08002 * 119.96605 * 179.97438 * 24 23 13 41 41 H 1.09001 * 109.92125 * 265.97811 * 25 8 7 42 42 H 1.09004 * 109.92077 * 144.68303 * 25 8 7 43 43 H 1.00893 * 111.00159 * 297.20666 * 28 26 25 44 44 H 1.00899 * 110.99671 * 61.16496 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 0.0006 6 1 3.9815 0.7375 0.8531 7 6 4.1446 0.7264 -1.3281 8 7 5.4647 1.3999 -1.4279 9 6 5.9556 1.3935 -2.8123 10 6 4.8531 1.8386 -3.7383 11 6 3.9945 0.9043 -4.2882 12 6 2.9796 1.3096 -5.1326 13 6 2.8287 2.6560 -5.4381 14 8 1.8355 3.0571 -6.2721 15 6 1.6733 4.3855 -6.4365 16 1 2.3686 5.0748 -5.9811 17 6 0.6134 4.8663 -7.1902 18 7 0.4548 6.1625 -7.3501 19 14 -0.5900 3.6740 -7.9772 20 1 -1.7060 3.4034 -7.0358 21 1 -1.1294 4.2678 -9.2269 22 1 0.1090 2.4028 -8.2948 23 6 3.6961 3.5912 -4.8887 24 6 4.7058 3.1800 -4.0412 25 6 5.2494 2.7823 -0.9483 26 6 4.0369 2.7476 0.0005 27 1 4.3336 3.0501 1.0047 28 7 2.9713 3.6255 -0.5016 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.5073 1.0026 -2.1682 33 1 4.2676 -0.3554 -1.2764 34 1 6.8019 2.0747 -2.9011 35 1 6.2711 0.3854 -3.0814 36 1 4.1151 -0.1430 -4.0539 37 1 2.3066 0.5801 -5.5582 38 1 -0.2868 6.4989 -7.8770 39 1 3.5815 4.6389 -5.1247 40 1 5.3810 3.9067 -3.6140 41 1 5.0416 3.4401 -1.7923 42 1 6.1315 3.1306 -0.4110 43 1 3.2770 4.5866 -0.5277 44 1 2.6514 3.3229 -1.4094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236343238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:17 Heat of formation + Delta-G solvation = -46.753959 kcal Electronic energy + Delta-G solvation = -28054.859098 eV Core-core repulsion = 24167.341490 eV Total energy + Delta-G solvation = -3887.517608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84222 -39.68789 -38.68446 -36.88898 -36.07782 -33.83455 -32.46754 -31.40427 -30.41522 -29.61210 -27.55185 -27.30693 -25.83961 -24.65738 -22.67586 -21.96843 -21.38544 -20.23626 -19.81149 -17.99999 -17.75180 -17.36385 -16.70114 -16.49133 -15.92534 -15.20194 -15.08315 -14.86036 -14.58124 -14.21744 -14.05304 -13.96256 -13.77171 -13.61964 -13.22469 -13.00164 -12.88936 -12.54920 -12.32504 -12.11598 -12.05951 -11.87286 -11.46085 -11.34308 -11.29517 -11.12741 -10.98294 -10.80989 -10.73497 -10.61566 -10.25196 -10.15093 -9.49700 -8.95228 -8.62759 -8.40004 -8.10849 -7.45786 -6.50244 -4.17235 1.95670 2.01111 2.40653 2.76032 3.16104 3.20324 3.33743 4.01392 4.16229 4.28580 4.32785 4.49537 4.70575 4.74154 4.96368 5.01386 5.12589 5.13210 5.15654 5.19300 5.21140 5.25804 5.30934 5.46984 5.55064 5.58855 5.68538 5.77816 5.81422 5.92342 5.98927 6.01746 6.16374 6.41632 6.52080 6.60564 6.71729 6.83480 6.95472 7.09795 7.15419 7.28514 7.47210 7.58246 7.68782 7.93408 8.01091 8.84411 9.44836 10.57012 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004336 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.978937 B = 6456.748492 C = 7355.156645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.454 3.546 4 O -0.449 6.449 5 C -0.082 4.082 6 H 0.116 0.884 7 C 0.034 3.966 8 N -0.503 5.503 9 C 0.097 3.903 10 C -0.218 4.218 11 C -0.064 4.064 12 C -0.193 4.193 13 C 0.163 3.837 14 O -0.213 6.213 15 C -0.391 4.391 16 H 0.107 0.893 17 C 0.065 3.935 18 N -0.875 5.875 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.260 1.260 23 C -0.221 4.221 24 C -0.065 4.065 25 C -0.012 4.012 26 C 0.097 3.903 27 H 0.093 0.907 28 N -0.809 5.809 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.332 0.668 44 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -11.148 13.751 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.293 3.707 4 O -0.331 6.331 5 C -0.102 4.102 6 H 0.134 0.866 7 C -0.094 4.094 8 N -0.226 5.226 9 C -0.031 4.031 10 C -0.220 4.220 11 C -0.083 4.083 12 C -0.212 4.212 13 C 0.110 3.890 14 O -0.118 6.118 15 C -0.467 4.467 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.512 5.512 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.184 1.184 23 C -0.240 4.240 24 C -0.084 4.084 25 C -0.142 4.142 26 C -0.016 4.016 27 H 0.111 0.889 28 N -0.340 5.340 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.639 -11.256 14.458 19.488 hybrid contribution -0.610 0.496 -1.731 1.901 sum 6.029 -10.759 12.726 17.722 Atomic orbital electron populations 1.23185 0.76770 1.03218 1.02518 1.86496 1.23055 1.34310 1.84792 1.23386 0.91415 0.81577 0.74328 1.90816 1.66016 1.34817 1.41412 1.22010 0.88035 0.98527 1.01653 0.86593 1.23416 0.90835 0.99946 0.95183 1.65205 1.24147 1.12939 1.20291 1.21103 0.95106 1.01747 0.85097 1.19916 1.02393 0.93919 1.05779 1.20528 0.94094 0.98063 0.95623 1.20229 1.02560 0.93552 1.04858 1.19140 0.88293 0.92760 0.88765 1.83575 1.46091 1.27042 1.55061 1.20755 1.13802 0.78052 1.34042 0.87616 1.24473 0.96976 0.96079 0.96334 1.69639 1.31207 1.11615 1.38760 0.86188 0.80721 0.81295 0.78764 1.19790 1.20649 1.18372 1.21264 0.98595 1.00772 1.03384 1.20665 0.96801 0.94497 0.96392 1.24057 0.99406 0.91727 0.99015 1.22177 0.89347 0.91007 0.99092 0.88921 1.59263 1.35757 1.04927 1.34086 0.88537 0.92209 0.91851 0.90783 0.89145 0.90635 0.90227 0.86881 0.86500 0.90913 0.84968 0.87535 0.91792 0.90191 0.85447 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -4.68 10.57 -39.28 -0.41 -5.10 16 3 C 0.45 6.29 7.03 36.01 0.25 6.54 16 4 O -0.45 -7.49 13.01 -18.75 -0.24 -7.73 16 5 C -0.08 -0.95 3.50 -89.91 -0.32 -1.26 16 6 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 7 C 0.03 0.40 5.50 -1.89 -0.01 0.39 16 8 N -0.50 -5.78 5.54 -231.89 -1.28 -7.06 16 9 C 0.10 1.16 5.69 -4.98 -0.03 1.13 16 10 C -0.22 -3.23 3.95 -104.58 -0.41 -3.64 16 11 C -0.06 -1.00 7.50 -39.61 -0.30 -1.30 16 12 C -0.19 -3.63 9.99 -39.39 -0.39 -4.02 16 13 C 0.16 3.62 6.65 -39.10 -0.26 3.36 16 14 O -0.21 -5.50 8.59 0.05 0.00 -5.50 16 15 C -0.39 -10.81 9.95 30.89 0.31 -10.50 16 16 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 17 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -24.95 13.96 55.48 0.77 -24.18 16 19 Si 0.90 21.43 28.62 -169.99 -4.86 16.57 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 24 C -0.06 -1.07 8.18 -39.61 -0.32 -1.39 16 25 C -0.01 -0.13 6.24 -2.75 -0.02 -0.15 16 26 C 0.10 1.12 3.97 -66.36 -0.26 0.86 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 N -0.81 -11.20 6.37 -3.52 -0.02 -11.22 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 1.05 4.77 -51.93 -0.25 0.81 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 40 H 0.11 1.55 7.16 -52.49 -0.38 1.18 16 41 H 0.06 0.80 4.64 -51.93 -0.24 0.56 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.33 4.16 9.07 -39.30 -0.36 3.81 16 44 H 0.35 5.59 8.15 -39.29 -0.32 5.27 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -29.98 353.72 -7.77 -37.75 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.90 Total: 12.81 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.15 Total: -11.68 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.53 Total: -42.46 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.66 Total: -18.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.86 Total: 16.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.98 -7.77 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236343238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.002 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds