Wall clock time and date at job start Tue Mar 31 2020 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34237 * 116.99804 * 2 1 4 4 O 1.20829 * 119.99521 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00237 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.78130 * 303.25218 * 5 3 2 7 7 C 1.54944 * 110.72019 * 66.49588 * 5 3 2 8 8 N 1.48534 * 103.22325 * 155.77283 * 7 5 3 9 9 C 1.46891 * 111.00126 * 200.28014 * 8 7 5 10 10 C 1.50699 * 109.47144 * 47.52378 * 9 8 7 11 11 C 1.38300 * 119.92915 * 269.72726 * 10 9 8 12 12 C 1.38109 * 120.06977 * 179.72278 * 11 10 9 13 13 C 1.38884 * 119.92502 * 0.53009 * 12 11 10 14 14 O 1.35749 * 120.06798 * 179.72866 * 13 12 11 15 15 C 1.34832 * 117.00083 * 174.48646 * 14 13 12 16 16 H 1.07992 * 120.00171 * 5.04844 * 15 14 13 17 17 C 1.38653 * 119.99612 * 185.05319 * 15 14 13 18 18 N 1.31557 * 119.99777 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00571 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47395 * 89.99668 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00098 * 19 17 15 22 22 H 1.48507 * 109.46730 * 330.00011 * 19 17 15 23 23 C 1.38881 * 119.86398 * 359.74064 * 13 12 11 24 24 C 1.38092 * 119.92895 * 0.02562 * 23 13 12 25 25 C 1.47898 * 105.82143 * 320.79608 * 8 7 5 26 26 C 1.53996 * 107.05969 * 25.33025 * 25 8 7 27 27 H 1.08998 * 110.30893 * 117.69480 * 26 25 8 28 28 N 1.46906 * 110.30668 * 239.76046 * 26 25 8 29 29 H 1.09004 * 109.46455 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47253 * 299.99886 * 1 2 3 31 31 H 1.08996 * 109.47318 * 59.99756 * 1 2 3 32 32 H 1.09004 * 110.66747 * 37.34555 * 7 5 3 33 33 H 1.08993 * 110.67041 * 274.20612 * 7 5 3 34 34 H 1.09003 * 109.47709 * 167.52585 * 9 8 7 35 35 H 1.09001 * 109.47526 * 287.52439 * 9 8 7 36 36 H 1.07994 * 119.96939 * 359.97438 * 11 10 9 37 37 H 1.07990 * 120.04013 * 180.27542 * 12 11 10 38 38 H 0.96999 * 120.00166 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.03272 * 179.97438 * 23 13 12 40 40 H 1.08002 * 119.96605 * 179.97438 * 24 23 13 41 41 H 1.09001 * 109.92125 * 265.97811 * 25 8 7 42 42 H 1.09004 * 109.92077 * 144.68303 * 25 8 7 43 43 H 1.00893 * 111.00159 * 297.20666 * 28 26 25 44 44 H 1.00899 * 110.99671 * 61.16496 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 0.0006 6 1 3.9815 0.7375 0.8531 7 6 4.1446 0.7264 -1.3281 8 7 5.4647 1.3999 -1.4279 9 6 5.9556 1.3935 -2.8123 10 6 4.8531 1.8386 -3.7383 11 6 3.9945 0.9043 -4.2882 12 6 2.9796 1.3096 -5.1326 13 6 2.8287 2.6560 -5.4381 14 8 1.8355 3.0571 -6.2721 15 6 1.6733 4.3855 -6.4365 16 1 2.3686 5.0748 -5.9811 17 6 0.6134 4.8663 -7.1902 18 7 0.4548 6.1625 -7.3501 19 14 -0.5900 3.6740 -7.9772 20 1 -1.7060 3.4034 -7.0358 21 1 -1.1294 4.2678 -9.2269 22 1 0.1090 2.4028 -8.2948 23 6 3.6961 3.5912 -4.8887 24 6 4.7058 3.1800 -4.0412 25 6 5.2494 2.7823 -0.9483 26 6 4.0369 2.7476 0.0005 27 1 4.3336 3.0501 1.0047 28 7 2.9713 3.6255 -0.5016 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.5073 1.0026 -2.1682 33 1 4.2676 -0.3554 -1.2764 34 1 6.8019 2.0747 -2.9011 35 1 6.2711 0.3854 -3.0814 36 1 4.1151 -0.1430 -4.0539 37 1 2.3066 0.5801 -5.5582 38 1 -0.2868 6.4989 -7.8770 39 1 3.5815 4.6389 -5.1247 40 1 5.3810 3.9067 -3.6140 41 1 5.0416 3.4401 -1.7923 42 1 6.1315 3.1306 -0.4110 43 1 3.2770 4.5866 -0.5277 44 1 2.6514 3.3229 -1.4094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236343238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:16 Heat of formation + Delta-G solvation = -68.444498 kcal Electronic energy + Delta-G solvation = -28055.799670 eV Core-core repulsion = 24167.341490 eV Total energy + Delta-G solvation = -3888.458180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90113 -41.06413 -40.00140 -38.28048 -37.22928 -35.00042 -34.42026 -32.52240 -31.84187 -30.87469 -28.56210 -28.32749 -27.47045 -26.00224 -23.97595 -23.28189 -22.54494 -21.46626 -20.80774 -19.85775 -19.14705 -18.73617 -17.70792 -17.50663 -16.99962 -16.72994 -16.40154 -16.01384 -15.93781 -15.62159 -15.48215 -15.37065 -15.02593 -14.81181 -14.41017 -14.38297 -14.18610 -14.01991 -13.97973 -13.12952 -13.07413 -13.00651 -12.93961 -12.57911 -12.53722 -12.44436 -12.26107 -12.15051 -12.00094 -11.82589 -11.63330 -11.32617 -11.23691 -10.94076 -9.85193 -9.65459 -9.13129 -9.05341 -8.54681 -6.27342 0.47927 0.53724 1.26923 1.30827 1.35218 1.46857 1.82707 2.23128 2.68002 2.96848 3.06256 3.17018 3.36891 3.53002 3.71649 3.94776 3.98791 4.07254 4.10153 4.23483 4.26189 4.31968 4.35083 4.37211 4.41600 4.49340 4.70421 4.72954 4.77304 4.80065 4.93159 4.94132 5.01452 5.09540 5.17462 5.30771 5.47557 5.52754 5.60176 5.72319 5.84282 5.86009 5.94763 6.17035 6.24588 6.47207 6.79640 6.97523 7.53301 8.56866 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004336 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.978937 B = 6456.748492 C = 7355.156645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.451 3.549 4 O -0.486 6.486 5 C -0.079 4.079 6 H 0.144 0.856 7 C 0.036 3.964 8 N -0.490 5.490 9 C 0.098 3.902 10 C -0.185 4.185 11 C -0.054 4.054 12 C -0.194 4.194 13 C 0.122 3.878 14 O -0.245 6.245 15 C -0.398 4.398 16 H 0.080 0.920 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.236 4.236 24 C -0.062 4.062 25 C -0.010 4.010 26 C 0.095 3.905 27 H 0.109 0.891 28 N -0.820 5.820 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.285 0.715 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.335 0.665 44 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -14.542 15.729 23.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.287 6.287 3 C 0.292 3.708 4 O -0.371 6.371 5 C -0.099 4.099 6 H 0.161 0.839 7 C -0.092 4.092 8 N -0.212 5.212 9 C -0.030 4.030 10 C -0.188 4.188 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.073 3.927 14 O -0.152 6.152 15 C -0.475 4.475 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.190 1.190 22 H -0.186 1.186 23 C -0.255 4.255 24 C -0.080 4.080 25 C -0.140 4.140 26 C -0.018 4.018 27 H 0.127 0.873 28 N -0.350 5.350 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.147 0.853 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.786 -14.687 16.478 23.757 hybrid contribution -1.006 1.385 -2.044 2.666 sum 7.780 -13.302 14.434 21.114 Atomic orbital electron populations 1.23391 0.75780 1.05211 1.01762 1.86491 1.24092 1.33705 1.84367 1.23904 0.92390 0.81322 0.73164 1.90812 1.67018 1.36019 1.43206 1.22123 0.86409 0.98718 1.02621 0.83855 1.23422 0.90340 1.01195 0.94268 1.65279 1.23707 1.12842 1.19373 1.21284 0.93974 1.03473 0.84269 1.20427 1.01888 0.92753 1.03686 1.20984 0.92386 1.00220 0.93642 1.20535 1.03556 0.92111 1.05128 1.19703 0.88486 0.94578 0.89921 1.83517 1.48449 1.25364 1.57902 1.20668 1.13643 0.79053 1.34107 0.90237 1.25266 0.98689 0.97702 0.97096 1.69724 1.32563 1.13136 1.40766 0.85249 0.78385 0.78923 0.78362 1.19305 1.19014 1.18647 1.21231 1.00053 0.99338 1.04863 1.20906 0.95796 0.96177 0.95169 1.24067 0.99985 0.91355 0.98569 1.22314 0.88822 0.90810 0.99822 0.87345 1.59254 1.37188 1.05574 1.32957 0.85180 0.92104 0.93541 0.93384 0.87013 0.89170 0.87805 0.82891 0.85684 0.90550 0.87853 0.85287 0.93281 0.88143 0.85146 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.37 -8.64 10.57 -51.49 -0.54 -9.18 16 3 C 0.45 11.80 7.03 71.24 0.50 12.31 16 4 O -0.49 -16.18 13.01 21.96 0.29 -15.89 16 5 C -0.08 -1.57 3.50 -10.34 -0.04 -1.60 16 6 H 0.14 2.10 8.14 -2.39 -0.02 2.09 16 7 C 0.04 0.70 5.50 86.65 0.48 1.17 16 8 N -0.49 -8.86 5.54 -887.57 -4.91 -13.77 16 9 C 0.10 1.83 5.69 85.56 0.49 2.31 16 10 C -0.19 -4.89 3.95 -19.83 -0.08 -4.97 16 11 C -0.05 -1.50 7.50 22.25 0.17 -1.34 16 12 C -0.19 -7.15 9.99 22.39 0.22 -6.92 16 13 C 0.12 5.62 6.65 22.58 0.15 5.78 16 14 O -0.24 -13.31 8.59 -22.75 -0.20 -13.51 16 15 C -0.40 -23.59 9.95 67.92 0.68 -22.91 16 16 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 17 C 0.01 0.65 5.49 84.83 0.47 1.11 16 18 N -0.92 -55.44 13.96 21.61 0.30 -55.14 16 19 Si 0.97 45.86 28.62 68.60 1.96 47.82 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 24 C -0.06 -1.98 8.18 22.25 0.18 -1.80 16 25 C -0.01 -0.18 6.24 86.45 0.54 0.36 16 26 C 0.10 1.95 3.97 45.79 0.18 2.14 16 27 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 28 N -0.82 -22.37 6.37 -165.04 -1.05 -23.42 16 29 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 31 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.05 1.21 4.77 -2.39 -0.01 1.20 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.55 8.03 -2.39 -0.02 1.53 16 35 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.13 4.34 8.06 -2.92 -0.02 4.31 16 38 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.10 4.96 5.64 -2.91 -0.02 4.95 16 40 H 0.13 3.53 7.16 -2.91 -0.02 3.51 16 41 H 0.05 1.09 4.64 -2.39 -0.01 1.08 16 42 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.33 8.42 9.07 -89.70 -0.81 7.61 16 44 H 0.33 10.81 8.15 -89.69 -0.73 10.08 16 Total: -1.00 -70.43 353.72 0.69 -69.74 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.49 Total: 35.73 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 5.34 Total: -22.36 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -5.66 Total: -92.34 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.45 Total: -38.58 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.96 Total: 47.82 kcal Total: -70.43 0.69 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236343238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds