Wall clock time and date at job start Tue Mar 31 2020 12:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.66920 * 2 1 4 4 C 1.53198 * 109.56717 * 239.69972 * 2 1 3 5 5 C 1.50698 * 109.07914 * 297.06077 * 4 2 1 6 6 O 1.21464 * 119.73988 * 151.16992 * 5 4 2 7 7 C 1.40510 * 120.51947 * 330.93552 * 5 4 2 8 8 C 1.35144 * 121.58535 * 0.29304 * 7 5 4 9 9 C 1.46628 * 119.42491 * 179.52415 * 8 7 5 10 10 C 1.38520 * 120.45199 * 104.70841 * 9 8 7 11 11 C 1.40958 * 120.34510 * 179.97438 * 10 9 8 12 12 C 1.41273 * 119.46001 * 180.02562 * 11 10 9 13 13 H 1.08010 * 120.00182 * 25.72272 * 12 11 10 14 14 C 1.39934 * 120.00505 * 205.71364 * 12 11 10 15 15 N 1.30832 * 119.99441 * 18.24035 * 14 12 11 16 16 Si 1.86797 * 120.00281 * 198.23327 * 14 12 11 17 17 H 1.48501 * 109.47054 * 60.00536 * 16 14 12 18 18 H 1.48512 * 109.46825 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47251 * 299.99846 * 16 14 12 20 20 C 1.39994 * 121.08123 * 0.02918 * 11 10 9 21 21 C 1.39929 * 120.39727 * 359.97438 * 20 11 10 22 22 C 1.40878 * 121.03644 * 179.97438 * 21 20 11 23 23 C 1.36211 * 119.62152 * 180.02562 * 22 21 20 24 24 C 1.39199 * 120.92091 * 359.95350 * 23 22 21 25 25 C 1.36621 * 120.94660 * 0.02827 * 24 23 22 26 26 C 1.39635 * 119.75664 * 359.97438 * 25 24 23 27 27 C 1.50535 * 121.15089 * 359.25136 * 8 7 5 28 28 H 1.09003 * 109.47332 * 299.69756 * 1 2 3 29 29 H 1.08997 * 109.47756 * 59.69421 * 1 2 3 30 30 H 1.08999 * 109.47537 * 179.70145 * 1 2 3 31 31 H 1.08994 * 109.47537 * 180.30203 * 3 2 1 32 32 H 1.09008 * 109.46997 * 300.30513 * 3 2 1 33 33 H 1.08998 * 109.46932 * 60.30183 * 3 2 1 34 34 H 1.09000 * 109.53372 * 56.94387 * 4 2 1 35 35 H 1.09000 * 109.53493 * 177.09577 * 4 2 1 36 36 H 1.07997 * 119.20842 * 180.02562 * 7 5 4 37 37 H 1.07999 * 119.82351 * 359.97438 * 10 9 8 38 38 H 0.97000 * 119.99773 * 179.97438 * 15 14 12 39 39 H 1.07995 * 119.80229 * 179.97438 * 20 11 10 40 40 H 1.07998 * 120.18736 * 0.07007 * 22 21 20 41 41 H 1.07991 * 119.53994 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.52352 * 180.30543 * 24 23 22 43 43 H 1.08003 * 120.12310 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46962 * 150.02900 * 27 8 7 45 45 H 1.09003 * 109.46972 * 270.02203 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0449 1.4407 0.0000 4 6 2.0430 -0.7283 -1.2463 5 6 1.5975 -2.1670 -1.1945 6 8 1.4145 -2.7787 -2.2278 7 6 1.3968 -2.8078 0.0397 8 6 1.5883 -2.1626 1.2117 9 6 1.3548 -2.8743 2.4723 10 6 2.4219 -3.3104 3.2403 11 6 2.1949 -3.9938 4.4520 12 6 3.2970 -4.4298 5.2208 13 1 4.2463 -3.9206 5.1413 14 6 3.1590 -5.5213 6.0855 15 7 2.1595 -6.3521 5.9358 16 14 4.4019 -5.7923 7.4534 17 1 4.4056 -4.6154 8.3591 18 1 4.0342 -7.0083 8.2226 19 1 5.7541 -5.9690 6.8658 20 6 0.8952 -4.2476 4.9061 21 6 -0.2106 -3.8242 4.1605 22 6 -1.5242 -4.0729 4.6045 23 6 -2.5797 -3.6482 3.8555 24 6 -2.3792 -2.9702 2.6565 25 6 -1.1185 -2.7124 2.1975 26 6 -0.0119 -3.1326 2.9382 27 6 2.0429 -0.7280 1.2456 28 1 -0.3634 0.5091 0.8927 29 1 -0.3634 0.5185 -0.8872 30 1 -0.3634 -1.0276 -0.0054 31 1 3.1349 1.4371 -0.0054 32 1 1.6789 1.9574 -0.8873 33 1 1.6878 1.9542 0.8927 34 1 1.6371 -0.2529 -2.1392 35 1 3.1318 -0.6833 -1.2724 36 1 1.0778 -3.8395 0.0521 37 1 3.4331 -3.1258 2.9089 38 1 2.0640 -7.1089 6.5350 39 1 0.7452 -4.7734 5.8374 40 1 -1.6934 -4.5966 5.5337 41 1 -3.5862 -3.8399 4.1969 42 1 -3.2325 -2.6393 2.0830 43 1 -0.9783 -2.1849 1.2655 44 1 1.6481 -0.2428 2.1382 45 1 3.1321 -0.6923 1.2643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242318252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:05 Heat of formation + Delta-G solvation = -7.558400 kcal Electronic energy + Delta-G solvation = -26564.472813 eV Core-core repulsion = 23089.504116 eV Total energy + Delta-G solvation = -3474.968698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.42937 -38.83757 -37.36390 -35.81259 -34.34759 -32.67415 -30.79319 -29.66925 -29.24186 -27.84039 -27.35674 -26.88277 -25.40184 -23.08765 -21.85006 -21.34901 -20.40887 -19.55661 -17.75862 -16.97373 -16.25164 -16.17309 -15.70680 -15.44556 -15.08389 -14.75899 -14.48703 -14.32223 -14.10715 -13.44549 -13.29280 -13.07965 -12.74637 -12.60462 -12.42800 -12.31543 -12.23866 -12.16926 -11.80353 -11.67290 -11.62275 -11.27816 -11.18951 -11.01870 -10.87006 -10.82714 -10.70104 -10.54595 -10.09080 -9.86600 -9.73384 -9.29180 -9.19392 -8.82723 -8.67034 -7.60990 -6.95962 -6.81934 -4.49385 1.03719 1.58614 2.20409 2.91438 2.97180 2.99641 3.03950 3.21407 3.77802 3.92377 4.37232 4.45397 4.67615 4.69837 4.79890 5.07081 5.23152 5.27857 5.43442 5.47301 5.50364 5.58697 5.60676 5.65578 5.68025 5.70253 5.77158 5.83127 5.95496 6.03639 6.07609 6.11582 6.19345 6.31694 6.35253 6.42246 6.52605 6.56147 6.68882 6.83463 6.86624 6.92249 7.16447 7.27455 7.32977 7.41979 7.53974 7.78765 7.81144 7.95035 8.04187 8.39739 8.62342 8.68300 9.98364 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004241 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.237514 B = 6601.259475 C = 7779.723871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.160 4.160 5 C 0.396 3.604 6 O -0.481 6.481 7 C -0.265 4.265 8 C 0.067 3.933 9 C -0.086 4.086 10 C -0.119 4.119 11 C 0.098 3.902 12 C -0.450 4.450 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.777 5.777 16 Si 0.909 3.091 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.196 4.196 21 C -0.001 4.001 22 C -0.135 4.135 23 C -0.119 4.119 24 C -0.186 4.186 25 C -0.084 4.084 26 C -0.110 4.110 27 C -0.093 4.093 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.285 0.715 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 10.570 -5.072 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.057 4.057 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.279 3.721 6 O -0.361 6.361 7 C -0.284 4.284 8 C 0.066 3.934 9 C -0.086 4.086 10 C -0.137 4.137 11 C 0.096 3.904 12 C -0.478 4.478 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.401 5.401 16 Si 0.733 3.267 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.217 4.217 21 C -0.001 4.001 22 C -0.153 4.153 23 C -0.137 4.137 24 C -0.204 4.204 25 C -0.102 4.102 26 C -0.111 4.111 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.980 10.021 -5.508 11.477 hybrid contribution 0.500 -0.443 0.769 1.019 sum -0.479 9.577 -4.739 10.696 Atomic orbital electron populations 1.22074 0.93915 1.02812 1.02182 1.20595 0.96350 0.95439 0.93351 1.21842 1.01088 0.94525 1.02229 1.22245 1.02928 0.95037 0.99551 1.20821 0.73075 0.89342 0.88894 1.90563 1.40945 1.67457 1.37156 1.22149 1.11031 1.02467 0.92704 1.21293 0.85628 0.93600 0.92859 1.19554 0.93201 1.01988 0.93838 1.21471 0.95943 1.01480 0.94822 1.17336 0.93559 0.89886 0.89637 1.19621 0.97677 1.11427 1.19106 0.90127 1.25923 0.96326 0.94710 0.97612 1.69818 1.27940 1.09651 1.32668 0.86338 0.80951 0.78696 0.80697 1.18626 1.20150 1.18881 1.21231 0.90332 1.08719 1.01384 1.17904 0.93536 0.95420 0.93276 1.20936 0.92196 1.02189 0.99982 1.20500 0.97753 0.99869 0.95589 1.20368 0.96207 1.05595 0.98253 1.20725 0.92445 0.98868 0.98198 1.18372 0.90501 1.05284 0.96950 1.21003 1.01639 0.91530 0.98765 0.91793 0.92432 0.91876 0.92307 0.92327 0.92008 0.89105 0.88376 0.85150 0.87756 0.90413 0.86008 0.87229 0.88040 0.88137 0.87582 0.89174 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.08 37.15 0.30 -1.42 16 2 C -0.06 -0.61 0.78 -154.35 -0.12 -0.73 16 3 C -0.14 -1.15 8.50 37.16 0.32 -0.84 16 4 C -0.16 -1.83 4.88 -27.78 -0.14 -1.97 16 5 C 0.40 6.13 6.07 -33.45 -0.20 5.93 16 6 O -0.48 -9.00 17.82 5.40 0.10 -8.90 16 7 C -0.26 -4.39 8.03 -39.83 -0.32 -4.71 16 8 C 0.07 1.07 3.55 -102.42 -0.36 0.71 16 9 C -0.09 -1.69 5.35 -103.00 -0.55 -2.24 16 10 C -0.12 -2.55 9.46 -38.45 -0.36 -2.91 16 11 C 0.10 2.39 5.55 -107.06 -0.59 1.79 16 12 C -0.45 -10.87 8.99 -37.79 -0.34 -11.21 16 13 H 0.08 1.83 7.91 -52.48 -0.42 1.42 16 14 C 0.07 1.73 5.08 -17.34 -0.09 1.64 16 15 N -0.78 -18.95 11.00 55.55 0.61 -18.34 16 16 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 17 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 20 C -0.20 -4.82 8.38 -38.29 -0.32 -5.14 16 21 C 0.00 -0.02 5.74 -106.89 -0.61 -0.64 16 22 C -0.13 -2.77 9.78 -39.31 -0.38 -3.15 16 23 C -0.12 -2.18 9.95 -39.95 -0.40 -2.58 16 24 C -0.19 -3.34 9.96 -39.81 -0.40 -3.74 16 25 C -0.08 -1.60 9.37 -39.64 -0.37 -1.97 16 26 C -0.11 -2.34 5.91 -104.59 -0.62 -2.95 16 27 C -0.09 -1.15 4.67 -27.90 -0.13 -1.28 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.83 4.01 -51.93 -0.21 0.62 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 2.42 8.04 -52.49 -0.42 2.00 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 39 H 0.12 3.12 6.14 -52.49 -0.32 2.79 16 40 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.81 4.82 -52.48 -0.25 1.55 16 44 H 0.09 1.14 8.10 -51.93 -0.42 0.71 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -27.10 362.50 -10.81 -37.90 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.25 Total: 8.92 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -5.70 Total: -37.40 kcal Atomic # 7 Polarization: -18.95 SS G_CDS: 0.61 Total: -18.34 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.10 Total: -8.90 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.10 -10.81 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242318252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.344 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds