Wall clock time and date at job start Tue Mar 31 2020 12:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.66920 * 2 1 4 4 C 1.53198 * 109.56717 * 239.69972 * 2 1 3 5 5 C 1.50698 * 109.07914 * 297.06077 * 4 2 1 6 6 O 1.21464 * 119.73988 * 151.16992 * 5 4 2 7 7 C 1.40510 * 120.51947 * 330.93552 * 5 4 2 8 8 C 1.35144 * 121.58535 * 0.29304 * 7 5 4 9 9 C 1.46628 * 119.42491 * 179.52415 * 8 7 5 10 10 C 1.38520 * 120.45199 * 104.70841 * 9 8 7 11 11 C 1.40958 * 120.34510 * 179.97438 * 10 9 8 12 12 C 1.41273 * 119.46001 * 180.02562 * 11 10 9 13 13 H 1.08010 * 120.00182 * 25.72272 * 12 11 10 14 14 C 1.39934 * 120.00505 * 205.71364 * 12 11 10 15 15 N 1.30832 * 119.99441 * 18.24035 * 14 12 11 16 16 Si 1.86797 * 120.00281 * 198.23327 * 14 12 11 17 17 H 1.48501 * 109.47054 * 60.00536 * 16 14 12 18 18 H 1.48512 * 109.46825 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47251 * 299.99846 * 16 14 12 20 20 C 1.39994 * 121.08123 * 0.02918 * 11 10 9 21 21 C 1.39929 * 120.39727 * 359.97438 * 20 11 10 22 22 C 1.40878 * 121.03644 * 179.97438 * 21 20 11 23 23 C 1.36211 * 119.62152 * 180.02562 * 22 21 20 24 24 C 1.39199 * 120.92091 * 359.95350 * 23 22 21 25 25 C 1.36621 * 120.94660 * 0.02827 * 24 23 22 26 26 C 1.39635 * 119.75664 * 359.97438 * 25 24 23 27 27 C 1.50535 * 121.15089 * 359.25136 * 8 7 5 28 28 H 1.09003 * 109.47332 * 299.69756 * 1 2 3 29 29 H 1.08997 * 109.47756 * 59.69421 * 1 2 3 30 30 H 1.08999 * 109.47537 * 179.70145 * 1 2 3 31 31 H 1.08994 * 109.47537 * 180.30203 * 3 2 1 32 32 H 1.09008 * 109.46997 * 300.30513 * 3 2 1 33 33 H 1.08998 * 109.46932 * 60.30183 * 3 2 1 34 34 H 1.09000 * 109.53372 * 56.94387 * 4 2 1 35 35 H 1.09000 * 109.53493 * 177.09577 * 4 2 1 36 36 H 1.07997 * 119.20842 * 180.02562 * 7 5 4 37 37 H 1.07999 * 119.82351 * 359.97438 * 10 9 8 38 38 H 0.97000 * 119.99773 * 179.97438 * 15 14 12 39 39 H 1.07995 * 119.80229 * 179.97438 * 20 11 10 40 40 H 1.07998 * 120.18736 * 0.07007 * 22 21 20 41 41 H 1.07991 * 119.53994 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.52352 * 180.30543 * 24 23 22 43 43 H 1.08003 * 120.12310 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46962 * 150.02900 * 27 8 7 45 45 H 1.09003 * 109.46972 * 270.02203 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0449 1.4407 0.0000 4 6 2.0430 -0.7283 -1.2463 5 6 1.5975 -2.1670 -1.1945 6 8 1.4145 -2.7787 -2.2278 7 6 1.3968 -2.8078 0.0397 8 6 1.5883 -2.1626 1.2117 9 6 1.3548 -2.8743 2.4723 10 6 2.4219 -3.3104 3.2403 11 6 2.1949 -3.9938 4.4520 12 6 3.2970 -4.4298 5.2208 13 1 4.2463 -3.9206 5.1413 14 6 3.1590 -5.5213 6.0855 15 7 2.1595 -6.3521 5.9358 16 14 4.4019 -5.7923 7.4534 17 1 4.4056 -4.6154 8.3591 18 1 4.0342 -7.0083 8.2226 19 1 5.7541 -5.9690 6.8658 20 6 0.8952 -4.2476 4.9061 21 6 -0.2106 -3.8242 4.1605 22 6 -1.5242 -4.0729 4.6045 23 6 -2.5797 -3.6482 3.8555 24 6 -2.3792 -2.9702 2.6565 25 6 -1.1185 -2.7124 2.1975 26 6 -0.0119 -3.1326 2.9382 27 6 2.0429 -0.7280 1.2456 28 1 -0.3634 0.5091 0.8927 29 1 -0.3634 0.5185 -0.8872 30 1 -0.3634 -1.0276 -0.0054 31 1 3.1349 1.4371 -0.0054 32 1 1.6789 1.9574 -0.8873 33 1 1.6878 1.9542 0.8927 34 1 1.6371 -0.2529 -2.1392 35 1 3.1318 -0.6833 -1.2724 36 1 1.0778 -3.8395 0.0521 37 1 3.4331 -3.1258 2.9089 38 1 2.0640 -7.1089 6.5350 39 1 0.7452 -4.7734 5.8374 40 1 -1.6934 -4.5966 5.5337 41 1 -3.5862 -3.8399 4.1969 42 1 -3.2325 -2.6393 2.0830 43 1 -0.9783 -2.1849 1.2655 44 1 1.6481 -0.2428 2.1382 45 1 3.1321 -0.6923 1.2643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242318252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:04 Heat of formation + Delta-G solvation = -17.655974 kcal Electronic energy + Delta-G solvation = -26564.910677 eV Core-core repulsion = 23089.504116 eV Total energy + Delta-G solvation = -3475.406561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62461 -40.40821 -38.54947 -37.44205 -35.78845 -34.23390 -32.27306 -31.33679 -30.50089 -29.21775 -28.29471 -27.73235 -27.12211 -24.56787 -23.37386 -22.99462 -21.66355 -20.85832 -19.31511 -18.13039 -17.82876 -17.74036 -17.00238 -16.75974 -16.56784 -16.04905 -15.96144 -15.37073 -15.31192 -14.90978 -14.64923 -14.26543 -14.20286 -14.12215 -13.99971 -13.72731 -13.30027 -13.15214 -13.08191 -12.87661 -12.76429 -12.64513 -12.59016 -12.50070 -12.16661 -12.05650 -11.73603 -11.68631 -11.67419 -11.41943 -11.30550 -10.89215 -10.55637 -10.36536 -10.10530 -9.29652 -8.69608 -8.48524 -6.32854 -0.29919 0.00830 0.55655 1.35059 1.38812 1.44195 1.49744 1.93969 2.16136 2.26939 3.00497 3.27661 3.46527 3.60694 3.78757 3.81935 3.90348 4.02332 4.20716 4.28143 4.29773 4.34878 4.49967 4.61275 4.65419 4.68795 4.71373 4.81940 4.87601 4.90065 4.91754 4.97653 5.03766 5.11345 5.15833 5.16296 5.21232 5.24790 5.28584 5.38738 5.45147 5.53125 5.55774 5.63485 5.68053 5.82426 5.89182 6.04364 6.19151 6.39626 6.59243 6.61803 6.83193 6.92059 8.27092 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004241 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.237514 B = 6601.259475 C = 7779.723871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.152 4.152 5 C 0.400 3.600 6 O -0.520 6.520 7 C -0.274 4.274 8 C 0.078 3.922 9 C -0.074 4.074 10 C -0.140 4.140 11 C 0.075 3.925 12 C -0.485 4.485 13 H 0.086 0.914 14 C 0.034 3.966 15 N -0.816 5.816 16 Si 0.980 3.020 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.227 4.227 21 C -0.023 4.023 22 C -0.159 4.159 23 C -0.107 4.107 24 C -0.178 4.178 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.092 4.092 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.288 0.712 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 13.338 -6.315 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.189 4.189 5 C 0.285 3.715 6 O -0.403 6.403 7 C -0.293 4.293 8 C 0.077 3.923 9 C -0.075 4.075 10 C -0.158 4.158 11 C 0.073 3.927 12 C -0.513 4.513 13 H 0.104 0.896 14 C -0.182 4.182 15 N -0.441 5.441 16 Si 0.801 3.199 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.181 1.181 20 C -0.247 4.247 21 C -0.024 4.024 22 C -0.178 4.178 23 C -0.125 4.125 24 C -0.196 4.196 25 C -0.107 4.107 26 C -0.130 4.130 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.254 12.807 -6.753 14.532 hybrid contribution 0.355 -1.285 1.065 1.707 sum -0.899 11.521 -5.687 12.880 Atomic orbital electron populations 1.22115 0.94434 1.01508 1.03283 1.20566 0.95911 0.96741 0.91563 1.21815 1.01916 0.92283 1.03199 1.22267 1.04337 0.91548 1.00726 1.21234 0.71703 0.91142 0.87380 1.90553 1.42937 1.68828 1.37990 1.22050 1.11854 1.01384 0.93975 1.21362 0.85041 0.95304 0.90569 1.19897 0.92443 1.00490 0.94625 1.21578 0.97181 1.02379 0.94691 1.17669 0.93675 0.90553 0.90809 1.19912 0.98041 1.12529 1.20824 0.89626 1.26776 0.98092 0.93969 0.99360 1.69905 1.29954 1.10385 1.33870 0.85269 0.78523 0.78611 0.77500 1.18267 1.19603 1.18077 1.21131 0.91485 1.10601 1.01514 1.18198 0.94133 0.95959 0.94077 1.21097 0.92152 1.03557 1.00965 1.20917 0.98724 0.97877 0.94963 1.20865 0.97001 1.03801 0.97953 1.20987 0.92263 0.98792 0.98653 1.18727 0.92047 1.05391 0.96831 1.21144 1.02879 0.88708 1.00118 0.91365 0.90764 0.94263 0.91046 0.90899 0.91572 0.87397 0.86035 0.88279 0.86402 0.90088 0.88312 0.87102 0.84426 0.84399 0.85638 0.89045 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.08 71.98 0.58 -2.44 16 2 C -0.05 -0.84 0.78 -52.08 -0.04 -0.88 16 3 C -0.14 -1.59 8.50 71.98 0.61 -0.98 16 4 C -0.15 -2.95 4.88 29.91 0.15 -2.80 16 5 C 0.40 11.92 6.07 26.24 0.16 12.08 16 6 O -0.52 -19.28 17.82 -3.60 -0.06 -19.35 16 7 C -0.27 -9.06 8.03 22.11 0.18 -8.89 16 8 C 0.08 2.45 3.55 -18.44 -0.07 2.38 16 9 C -0.07 -3.00 5.35 -18.81 -0.10 -3.10 16 10 C -0.14 -6.26 9.46 23.00 0.22 -6.04 16 11 C 0.08 3.88 5.55 -21.44 -0.12 3.77 16 12 C -0.48 -24.71 8.99 23.43 0.21 -24.50 16 13 H 0.09 4.08 7.91 -2.91 -0.02 4.05 16 14 C 0.03 1.66 5.08 85.25 0.43 2.10 16 15 N -0.82 -42.29 11.00 21.82 0.24 -42.05 16 16 Si 0.98 36.78 29.60 68.60 2.03 38.81 16 17 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 20 C -0.23 -11.94 8.38 23.11 0.19 -11.74 16 21 C -0.02 -1.12 5.74 -21.33 -0.12 -1.24 16 22 C -0.16 -6.67 9.78 22.44 0.22 -6.45 16 23 C -0.11 -3.72 9.95 22.03 0.22 -3.50 16 24 C -0.18 -5.94 9.96 22.12 0.22 -5.72 16 25 C -0.09 -3.27 9.37 22.23 0.21 -3.06 16 26 C -0.13 -5.57 5.91 -19.84 -0.12 -5.69 16 27 C -0.09 -2.06 4.67 29.83 0.14 -1.92 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.94 4.01 -2.39 -0.01 0.93 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 3.86 8.04 -2.91 -0.02 3.84 16 37 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 39 H 0.10 5.51 6.14 -2.91 -0.02 5.49 16 40 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.14 3.78 8.06 -2.92 -0.02 3.75 16 42 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.13 4.08 4.82 -2.91 -0.01 4.06 16 44 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 45 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -63.83 362.50 6.37 -57.46 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 1.00 Total: 33.75 kcal Atomic # 6 Polarization: -71.79 SS G_CDS: 3.17 Total: -68.62 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.24 Total: -42.05 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -63.83 6.37 -57.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242318252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.800 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds