Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48501 * 109.46962 * 239.99680 * 3 2 1 5 5 H 1.48498 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 119.99982 * 3 2 1 7 7 C 1.37879 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.93810 * 270.02008 * 10 9 7 12 12 C 1.38304 * 120.23861 * 179.97438 * 11 10 9 13 13 C 1.38041 * 120.12460 * 359.78663 * 12 11 10 14 14 C 1.39314 * 119.87481 * 0.46704 * 13 12 11 15 15 C 1.48402 * 120.12050 * 179.78786 * 14 13 12 16 16 C 1.39490 * 119.99265 * 179.72341 * 15 14 13 17 17 C 1.38297 * 120.31445 * 180.62131 * 16 15 14 18 18 C 1.37838 * 119.94263 * 0.49034 * 17 16 15 19 19 C 1.39483 * 120.33770 * 358.17196 * 18 17 16 20 20 C 1.39119 * 119.99029 * 359.74598 * 15 14 13 21 21 C 1.47371 * 119.48189 * 182.66374 * 19 18 17 22 22 O 1.21247 * 121.23202 * 245.87166 * 21 19 18 23 23 C 1.51613 * 117.53888 * 65.85823 * 21 19 18 24 24 C 1.50783 * 110.13978 * 278.53706 * 23 21 19 25 25 C 1.52155 * 114.12810 * 64.56569 * 24 23 21 26 26 C 1.51823 * 119.98118 * 177.24778 * 18 17 16 27 27 C 1.37998 * 119.93996 * 89.99933 * 10 9 7 28 28 H 0.96999 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47343 * 60.00432 * 9 7 2 30 30 H 1.08997 * 109.47465 * 299.99480 * 9 7 2 31 31 H 1.08000 * 119.88120 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.93418 * 180.02562 * 12 11 10 33 33 H 1.07992 * 120.06295 * 180.23082 * 13 12 11 34 34 H 1.07994 * 119.84435 * 0.60283 * 16 15 14 35 35 H 1.08002 * 120.02524 * 180.20547 * 17 16 15 36 36 H 1.08001 * 120.31476 * 359.60329 * 20 15 14 37 37 H 1.09005 * 109.35661 * 38.73987 * 23 21 19 38 38 H 1.08997 * 109.35947 * 158.32810 * 23 21 19 39 39 H 1.09004 * 108.55143 * 185.76668 * 24 23 21 40 40 H 1.08995 * 108.55290 * 303.51365 * 24 23 21 41 41 H 1.09004 * 109.07968 * 49.12766 * 25 24 23 42 42 H 1.09002 * 109.07756 * 168.09479 * 25 24 23 43 43 H 1.09000 * 109.47385 * 351.90959 * 26 18 17 44 44 H 1.08999 * 109.36951 * 231.93186 * 26 18 17 45 45 H 1.08001 * 120.06425 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6793 -4.1691 -1.1983 12 6 3.5785 -5.2199 -1.2055 13 6 4.0362 -5.7483 -0.0152 14 6 3.5833 -5.2274 1.1949 15 6 4.0682 -5.7944 2.4777 16 6 3.6174 -5.2671 3.6879 17 6 4.0747 -5.7819 4.8872 18 6 4.9880 -6.8143 4.8892 19 6 5.4261 -7.3696 3.6870 20 6 4.9727 -6.8515 2.4731 21 6 6.3575 -8.5114 3.7124 22 8 7.4895 -8.4087 3.2904 23 6 5.8479 -9.8191 4.2858 24 6 5.9261 -9.7912 5.7914 25 6 5.0235 -8.7533 6.4419 26 6 5.5379 -7.3382 6.2037 27 6 2.6779 -4.1681 1.1964 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5572 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.3264 -3.7565 -2.1319 32 1 3.9261 -5.6253 -2.1443 33 1 4.7412 -6.5664 -0.0221 34 1 2.9081 -4.4527 3.6882 35 1 3.7200 -5.3722 5.8215 36 1 5.3203 -7.2674 1.5390 37 1 4.8122 -9.9683 3.9805 38 1 6.4560 -10.6408 3.9076 39 1 5.6525 -10.7756 6.1712 40 1 6.9559 -9.5827 6.0814 41 1 4.0201 -8.8425 6.0254 42 1 4.9805 -8.9410 7.5148 43 1 5.2121 -6.6908 7.0178 44 1 6.6270 -7.3493 6.1612 45 1 2.3267 -3.7579 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245597559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = -14.739928 kcal Electronic energy + Delta-G solvation = -25290.798334 eV Core-core repulsion = 21815.518222 eV Total energy + Delta-G solvation = -3475.280112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71718 -39.12966 -37.98533 -36.28029 -33.69928 -32.73172 -31.72671 -31.28146 -30.37633 -28.73659 -27.05463 -25.23919 -24.35478 -23.37955 -22.43044 -21.84756 -20.69450 -20.04578 -19.06096 -17.23322 -16.46191 -16.34066 -16.17430 -15.57542 -15.28660 -14.77748 -14.62891 -14.49377 -14.21139 -13.96016 -13.89854 -13.66788 -13.61870 -13.07494 -12.77287 -12.59835 -12.50951 -12.27316 -12.07261 -11.64324 -11.51102 -11.32317 -11.27943 -11.11911 -11.01574 -10.94675 -10.73639 -10.53774 -10.31004 -9.87089 -9.63068 -9.49969 -9.22570 -8.99649 -8.45615 -8.02437 -7.62133 -6.07921 -4.12004 0.78170 1.08638 1.75267 2.03690 2.22232 3.30119 3.34220 3.37722 3.61772 3.75879 4.25280 4.36947 4.41043 4.52032 4.55719 4.64417 4.70560 4.89018 4.91426 5.02696 5.15692 5.25248 5.25601 5.27936 5.38447 5.45147 5.48212 5.51824 5.55925 5.60782 5.66668 5.80917 5.82381 5.91219 5.94815 6.06254 6.10317 6.18606 6.38441 6.48327 6.53366 6.67858 6.82311 7.01953 7.10445 7.13509 7.18629 7.44719 7.63418 7.77944 7.87813 8.27297 8.93056 9.52159 11.01929 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002718 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.174284 B =10297.838390 C =11031.929911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.033 4.033 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.136 4.136 14 C -0.062 4.062 15 C -0.029 4.029 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.062 4.062 19 C -0.155 4.155 20 C -0.077 4.077 21 C 0.413 3.587 22 O -0.445 6.445 23 C -0.161 4.161 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.087 4.087 27 C -0.107 4.107 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -19.610 11.546 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.033 4.033 11 C -0.134 4.134 12 C -0.140 4.140 13 C -0.153 4.153 14 C -0.062 4.062 15 C -0.029 4.029 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.062 4.062 19 C -0.156 4.156 20 C -0.095 4.095 21 C 0.288 3.712 22 O -0.318 6.318 23 C -0.199 4.199 24 C -0.149 4.149 25 C -0.157 4.157 26 C -0.125 4.125 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.896 -19.443 11.327 24.196 hybrid contribution 0.362 1.074 -0.137 1.142 sum 9.258 -18.368 11.190 23.416 Atomic orbital electron populations 1.69944 1.06026 1.26990 1.50312 1.25003 0.94883 0.99250 0.95103 0.86599 0.79548 0.82777 0.78800 1.20145 1.21196 1.20124 1.21015 0.93022 0.89840 1.51285 0.92510 1.18365 0.92521 0.89544 0.98472 1.20647 0.96014 0.94933 0.91687 1.21213 0.97660 0.96046 0.98480 1.20974 0.98340 0.97442 0.97238 1.20919 1.01418 1.01040 0.91972 1.18641 0.98900 0.97481 0.91226 1.18822 0.96128 0.94968 0.92943 1.21568 0.98969 0.99179 0.91366 1.20916 0.97489 0.96510 0.98232 1.19933 0.96462 0.96384 0.93437 1.20078 1.01944 0.99487 0.94098 1.21180 0.96351 0.95550 0.96462 1.22808 0.86242 0.89319 0.72859 1.90557 1.19914 1.85474 1.35827 1.21873 1.04111 0.96372 0.97574 1.20851 1.00907 1.00363 0.92736 1.21322 1.00043 0.93272 1.01026 1.20853 1.00635 0.96686 0.94280 1.21138 0.97322 0.95401 0.98646 0.92740 0.95207 0.95270 0.86239 0.86745 0.86956 0.84768 0.85248 0.85347 0.88761 0.89025 0.90636 0.91709 0.90989 0.90879 0.90115 0.90889 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.20 9.09 -34.44 -0.31 -14.52 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.05 1.20 5.10 -29.03 -0.15 1.06 16 10 C -0.03 -0.70 5.06 -104.67 -0.53 -1.23 16 11 C -0.12 -2.22 9.69 -39.52 -0.38 -2.60 16 12 C -0.12 -2.00 10.03 -39.63 -0.40 -2.39 16 13 C -0.14 -2.16 9.42 -39.25 -0.37 -2.53 16 14 C -0.06 -1.06 5.88 -104.90 -0.62 -1.68 16 15 C -0.03 -0.42 5.87 -104.92 -0.62 -1.04 16 16 C -0.09 -1.26 9.42 -39.09 -0.37 -1.62 16 17 C -0.11 -1.28 9.66 -39.71 -0.38 -1.66 16 18 C -0.06 -0.68 5.12 -103.75 -0.53 -1.21 16 19 C -0.16 -1.90 5.47 -105.23 -0.58 -2.48 16 20 C -0.08 -1.05 9.20 -38.76 -0.36 -1.41 16 21 C 0.41 4.74 5.52 -30.14 -0.17 4.57 16 22 O -0.45 -6.54 17.93 5.59 0.10 -6.44 16 23 C -0.16 -1.24 5.78 -28.54 -0.17 -1.41 16 24 C -0.11 -0.69 5.30 -28.27 -0.15 -0.84 16 25 C -0.12 -0.75 5.59 -27.45 -0.15 -0.91 16 26 C -0.09 -0.70 5.40 -27.61 -0.15 -0.85 16 27 C -0.11 -2.06 9.07 -39.25 -0.36 -2.42 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.11 1.51 6.20 -52.49 -0.33 1.18 16 34 H 0.13 1.77 6.18 -52.49 -0.32 1.45 16 35 H 0.13 1.14 7.98 -52.49 -0.42 0.72 16 36 H 0.13 1.63 6.21 -52.49 -0.33 1.30 16 37 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 41 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.54 7.92 -51.93 -0.41 0.12 16 44 H 0.07 0.63 7.58 -51.93 -0.39 0.23 16 45 H 0.12 2.23 6.19 -52.49 -0.32 1.91 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.33 368.15 -11.72 -43.06 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.26 Total: 0.38 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -6.83 Total: -33.61 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.34 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.10 Total: -6.44 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.33 -11.72 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245597559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.318 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds