Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99900 * 2 1 4 4 H 1.48501 * 109.46962 * 239.99680 * 3 2 1 5 5 H 1.48498 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 119.99982 * 3 2 1 7 7 C 1.37879 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.38342 * 119.93810 * 270.02008 * 10 9 7 12 12 C 1.38304 * 120.23861 * 179.97438 * 11 10 9 13 13 C 1.38041 * 120.12460 * 359.78663 * 12 11 10 14 14 C 1.39314 * 119.87481 * 0.46704 * 13 12 11 15 15 C 1.48402 * 120.12050 * 179.78786 * 14 13 12 16 16 C 1.39490 * 119.99265 * 179.72341 * 15 14 13 17 17 C 1.38297 * 120.31445 * 180.62131 * 16 15 14 18 18 C 1.37838 * 119.94263 * 0.49034 * 17 16 15 19 19 C 1.39483 * 120.33770 * 358.17196 * 18 17 16 20 20 C 1.39119 * 119.99029 * 359.74598 * 15 14 13 21 21 C 1.47371 * 119.48189 * 182.66374 * 19 18 17 22 22 O 1.21247 * 121.23202 * 245.87166 * 21 19 18 23 23 C 1.51613 * 117.53888 * 65.85823 * 21 19 18 24 24 C 1.50783 * 110.13978 * 278.53706 * 23 21 19 25 25 C 1.52155 * 114.12810 * 64.56569 * 24 23 21 26 26 C 1.51823 * 119.98118 * 177.24778 * 18 17 16 27 27 C 1.37998 * 119.93996 * 89.99933 * 10 9 7 28 28 H 0.96999 * 119.99939 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47343 * 60.00432 * 9 7 2 30 30 H 1.08997 * 109.47465 * 299.99480 * 9 7 2 31 31 H 1.08000 * 119.88120 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.93418 * 180.02562 * 12 11 10 33 33 H 1.07992 * 120.06295 * 180.23082 * 13 12 11 34 34 H 1.07994 * 119.84435 * 0.60283 * 16 15 14 35 35 H 1.08002 * 120.02524 * 180.20547 * 17 16 15 36 36 H 1.08001 * 120.31476 * 359.60329 * 20 15 14 37 37 H 1.09005 * 109.35661 * 38.73987 * 23 21 19 38 38 H 1.08997 * 109.35947 * 158.32810 * 23 21 19 39 39 H 1.09004 * 108.55143 * 185.76668 * 24 23 21 40 40 H 1.08995 * 108.55290 * 303.51365 * 24 23 21 41 41 H 1.09004 * 109.07968 * 49.12766 * 25 24 23 42 42 H 1.09002 * 109.07756 * 168.09479 * 25 24 23 43 43 H 1.09000 * 109.47385 * 351.90959 * 26 18 17 44 44 H 1.08999 * 109.36951 * 231.93186 * 26 18 17 45 45 H 1.08001 * 120.06425 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6793 -4.1691 -1.1983 12 6 3.5785 -5.2199 -1.2055 13 6 4.0362 -5.7483 -0.0152 14 6 3.5833 -5.2274 1.1949 15 6 4.0682 -5.7944 2.4777 16 6 3.6174 -5.2671 3.6879 17 6 4.0747 -5.7819 4.8872 18 6 4.9880 -6.8143 4.8892 19 6 5.4261 -7.3696 3.6870 20 6 4.9727 -6.8515 2.4731 21 6 6.3575 -8.5114 3.7124 22 8 7.4895 -8.4087 3.2904 23 6 5.8479 -9.8191 4.2858 24 6 5.9261 -9.7912 5.7914 25 6 5.0235 -8.7533 6.4419 26 6 5.5379 -7.3382 6.2037 27 6 2.6779 -4.1681 1.1964 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5572 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.3264 -3.7565 -2.1319 32 1 3.9261 -5.6253 -2.1443 33 1 4.7412 -6.5664 -0.0221 34 1 2.9081 -4.4527 3.6882 35 1 3.7200 -5.3722 5.8215 36 1 5.3203 -7.2674 1.5390 37 1 4.8122 -9.9683 3.9805 38 1 6.4560 -10.6408 3.9076 39 1 5.6525 -10.7756 6.1712 40 1 6.9559 -9.5827 6.0814 41 1 4.0201 -8.8425 6.0254 42 1 4.9805 -8.9410 7.5148 43 1 5.2121 -6.6908 7.0178 44 1 6.6270 -7.3493 6.1612 45 1 2.3267 -3.7579 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245597559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = -28.210877 kcal Electronic energy + Delta-G solvation = -25291.382478 eV Core-core repulsion = 21815.518222 eV Total energy + Delta-G solvation = -3475.864256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63911 -40.37989 -39.09315 -37.03362 -35.52392 -33.94935 -32.94680 -32.62512 -31.35400 -29.87023 -28.80543 -26.08890 -25.56393 -24.92281 -23.54001 -23.04210 -21.56617 -21.19059 -20.09176 -18.56543 -18.24825 -17.41934 -17.19961 -16.73633 -16.36563 -16.29246 -15.75882 -15.69702 -15.13943 -14.95995 -14.81653 -14.65362 -14.51947 -14.45173 -14.14956 -13.97174 -13.67677 -13.42131 -13.25646 -13.18756 -12.83654 -12.63646 -12.51475 -12.45405 -12.30341 -11.85004 -11.82334 -11.62643 -11.59977 -11.55147 -11.35310 -10.72444 -10.62517 -10.39706 -9.97796 -9.54848 -8.88724 -8.22655 -6.35883 -0.31955 0.07655 0.59799 0.81126 1.01338 1.38056 1.40193 1.48741 2.37183 2.57032 2.92166 3.08124 3.12930 3.52820 3.67181 3.75080 3.83648 3.92631 4.05433 4.12831 4.13918 4.19624 4.28313 4.36768 4.40604 4.48397 4.56081 4.63829 4.71606 4.80469 4.84137 4.87651 4.97396 5.01378 5.07694 5.16182 5.18218 5.22751 5.25954 5.32134 5.34353 5.37183 5.41645 5.48959 5.59916 5.70543 5.78047 5.86381 6.03805 6.08615 6.22095 6.32186 6.76133 7.32650 8.86584 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.002718 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.174284 B =10297.838390 C =11031.929911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.058 3.942 10 C -0.061 4.061 11 C -0.134 4.134 12 C -0.110 4.110 13 C -0.132 4.132 14 C -0.056 4.056 15 C -0.054 4.054 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.052 4.052 19 C -0.168 4.168 20 C -0.081 4.081 21 C 0.417 3.583 22 O -0.484 6.484 23 C -0.157 4.157 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.089 4.089 27 C -0.123 4.123 28 H 0.266 0.734 29 H 0.005 0.995 30 H 0.004 0.996 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -21.503 13.260 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.061 4.061 11 C -0.152 4.152 12 C -0.128 4.128 13 C -0.150 4.150 14 C -0.056 4.056 15 C -0.054 4.054 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.052 4.052 19 C -0.168 4.168 20 C -0.099 4.099 21 C 0.294 3.706 22 O -0.359 6.359 23 C -0.194 4.194 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.126 4.126 27 C -0.141 4.141 28 H 0.075 0.925 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.756 -21.350 13.047 27.234 hybrid contribution -0.187 1.548 -0.572 1.661 sum 10.569 -19.802 12.475 25.680 Atomic orbital electron populations 1.70064 1.07581 1.28068 1.51095 1.25893 0.95762 1.02978 0.94522 0.85531 0.78358 0.78255 0.79129 1.19381 1.20340 1.19348 1.21318 0.92951 0.91279 1.51240 0.93015 1.18095 0.92835 0.91022 0.95972 1.20352 0.97003 0.95106 0.93679 1.21260 0.99024 0.97475 0.97458 1.21299 0.96603 0.95822 0.99069 1.21333 1.01132 1.01254 0.91291 1.18862 0.97499 0.96219 0.93027 1.18768 0.97913 0.96428 0.92341 1.21683 0.99145 0.99317 0.92091 1.21212 0.97102 0.96231 0.98393 1.20342 0.95150 0.95262 0.94477 1.20368 1.02175 1.00095 0.94211 1.21253 0.96067 0.95164 0.97446 1.23296 0.85299 0.90341 0.71636 1.90549 1.21437 1.86151 1.37802 1.21928 1.04751 0.94147 0.98590 1.20904 1.00814 1.01762 0.91365 1.21336 0.99726 0.91836 1.02514 1.20986 1.00257 0.98337 0.93011 1.21103 0.98604 0.96708 0.97700 0.92476 0.97661 0.97731 0.86527 0.83118 0.83835 0.85469 0.82529 0.84773 0.87493 0.87997 0.88136 0.92074 0.91067 0.88621 0.88262 0.91340 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -30.63 9.09 25.60 0.23 -30.40 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.06 3.12 5.10 29.10 0.15 3.27 16 10 C -0.06 -2.77 5.06 -19.90 -0.10 -2.87 16 11 C -0.13 -5.28 9.69 22.31 0.22 -5.06 16 12 C -0.11 -3.48 10.03 22.24 0.22 -3.25 16 13 C -0.13 -4.05 9.42 22.48 0.21 -3.84 16 14 C -0.06 -1.91 5.88 -20.04 -0.12 -2.03 16 15 C -0.05 -1.60 5.87 -20.06 -0.12 -1.72 16 16 C -0.10 -2.81 9.42 22.59 0.21 -2.59 16 17 C -0.11 -2.32 9.66 22.19 0.21 -2.10 16 18 C -0.05 -1.02 5.12 -19.30 -0.10 -1.12 16 19 C -0.17 -3.84 5.47 -20.26 -0.11 -3.95 16 20 C -0.08 -2.11 9.20 22.80 0.21 -1.90 16 21 C 0.42 8.82 5.52 28.38 0.16 8.98 16 22 O -0.48 -13.75 17.93 -2.93 -0.05 -13.80 16 23 C -0.16 -1.96 5.78 29.42 0.17 -1.79 16 24 C -0.11 -0.98 5.30 29.60 0.16 -0.82 16 25 C -0.12 -1.03 5.59 30.13 0.17 -0.86 16 26 C -0.09 -1.15 5.40 30.02 0.16 -0.99 16 27 C -0.12 -4.97 9.07 22.48 0.20 -4.76 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 30 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 31 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.14 3.47 6.20 -2.91 -0.02 3.45 16 34 H 0.13 3.51 6.18 -2.91 -0.02 3.49 16 35 H 0.16 2.33 7.98 -2.91 -0.02 2.30 16 36 H 0.13 3.19 6.21 -2.91 -0.02 3.18 16 37 H 0.11 1.09 8.13 -2.38 -0.02 1.07 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.62 7.92 -2.39 -0.02 0.60 16 41 H 0.07 0.68 7.85 -2.39 -0.02 0.66 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.94 7.92 -2.39 -0.02 0.92 16 44 H 0.07 1.00 7.58 -2.39 -0.02 0.98 16 45 H 0.12 4.62 6.19 -2.91 -0.02 4.61 16 Total: -1.00 -71.08 368.15 5.86 -65.22 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.99 Total: 14.63 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 2.60 Total: -56.95 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.05 Total: -13.80 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -71.08 5.86 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245597559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.011 kcal (2) G-P(sol) polarization free energy of solvation -71.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds