Wall clock time and date at job start Tue Mar 31 2020 12:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99737 * 2 1 4 4 H 1.48503 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46993 * 299.99763 * 3 2 1 6 6 H 1.48496 * 109.47080 * 59.99758 * 3 2 1 7 7 C 1.37877 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99534 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.38320 * 119.87833 * 89.99889 * 10 9 7 12 12 C 1.38026 * 120.11975 * 180.02562 * 11 10 9 13 13 C 1.39333 * 119.87542 * 359.97438 * 12 11 10 14 14 C 1.48408 * 120.11687 * 179.97438 * 13 12 11 15 15 C 1.39496 * 119.99369 * 359.97438 * 14 13 12 16 16 C 1.38286 * 120.32003 * 179.36003 * 15 14 13 17 17 C 1.37853 * 119.94761 * 0.35332 * 16 15 14 18 18 C 1.39451 * 120.33038 * 0.48455 * 17 16 15 19 19 C 1.39119 * 119.99187 * 180.02562 * 14 13 12 20 20 C 1.47415 * 119.43631 * 176.48738 * 18 17 16 21 21 O 1.21251 * 121.03932 * 114.75566 * 20 18 17 22 22 C 1.51604 * 117.72587 * 294.87834 * 20 18 17 23 23 C 1.50787 * 110.15216 * 81.38933 * 22 20 18 24 24 C 1.52158 * 114.12896 * 295.41682 * 23 22 20 25 25 C 1.51843 * 119.97706 * 181.64444 * 17 16 15 26 26 C 1.39321 * 119.76236 * 0.25850 * 13 12 11 27 27 C 1.38029 * 119.87696 * 359.46591 * 26 13 12 28 28 H 0.97002 * 119.99848 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47104 * 60.00080 * 9 7 2 30 30 H 1.08997 * 109.47039 * 299.99906 * 9 7 2 31 31 H 1.08001 * 119.94017 * 359.97438 * 11 10 9 32 32 H 1.07994 * 120.05754 * 180.02562 * 12 11 10 33 33 H 1.08008 * 119.84349 * 359.33498 * 15 14 13 34 34 H 1.08001 * 120.02666 * 180.38203 * 16 15 14 35 35 H 1.08002 * 120.31787 * 359.82922 * 19 14 13 36 36 H 1.09000 * 109.35756 * 321.18503 * 22 20 18 37 37 H 1.08998 * 109.36343 * 201.60230 * 22 20 18 38 38 H 1.08999 * 108.55269 * 174.21332 * 23 22 20 39 39 H 1.09003 * 108.55155 * 56.61850 * 23 22 20 40 40 H 1.08997 * 109.08039 * 310.83685 * 24 23 22 41 41 H 1.09001 * 109.07875 * 191.86031 * 24 23 22 42 42 H 1.08999 * 109.50685 * 8.49666 * 25 17 16 43 43 H 1.08998 * 109.49837 * 128.56731 * 25 17 16 44 44 H 1.08001 * 120.06362 * 179.74885 * 26 13 12 45 45 H 1.07997 * 119.94031 * 180.27216 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6773 -4.1678 1.2017 12 6 3.5746 -5.2165 1.2087 13 6 4.0298 -5.7485 0.0041 14 6 4.9951 -6.8757 0.0053 15 6 5.4486 -7.4041 1.2141 16 6 6.3378 -8.4631 1.2231 17 6 6.7854 -8.9961 0.0332 18 6 6.3537 -8.4663 -1.1823 19 6 5.4483 -7.4045 -1.1990 20 6 6.9041 -8.9998 -2.4415 21 8 6.1980 -9.5864 -3.2336 22 6 8.3818 -8.7920 -2.7093 23 6 9.1935 -9.8310 -1.9776 24 6 9.1010 -9.7384 -0.4617 25 6 7.7327 -10.1829 0.0422 26 6 3.5801 -5.2144 -1.2016 27 6 2.6784 -4.1694 -1.1969 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.3240 -3.7544 2.1349 32 1 3.9225 -5.6245 2.1462 33 1 5.1038 -6.9839 2.1474 34 1 6.6811 -8.8726 2.1617 35 1 5.0990 -7.0004 -2.1377 36 1 8.6746 -7.7990 -2.3685 37 1 8.5701 -8.8744 -3.7797 38 1 10.2383 -9.7230 -2.2686 39 1 8.8514 -10.8189 -2.2862 40 1 9.2752 -8.7066 -0.1565 41 1 9.8676 -10.3741 -0.0185 42 1 7.8259 -10.5665 1.0581 43 1 7.3414 -10.9655 -0.6078 44 1 3.9330 -5.6203 -2.1382 45 1 2.3258 -3.7576 -2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245597967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:11 Heat of formation + Delta-G solvation = -14.816548 kcal Electronic energy + Delta-G solvation = -25069.564354 eV Core-core repulsion = 21594.280919 eV Total energy + Delta-G solvation = -3475.283435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75735 -39.14916 -38.02675 -36.32964 -33.81590 -32.62377 -31.79954 -31.01490 -30.28358 -29.43564 -27.00035 -25.10268 -24.40319 -23.31426 -22.53930 -21.44725 -20.88804 -20.32109 -19.19496 -17.42240 -16.47192 -16.36681 -16.01845 -15.67246 -15.28757 -14.77689 -14.63728 -14.28210 -14.27462 -14.10110 -13.87700 -13.77841 -13.56299 -13.06752 -12.94964 -12.67338 -12.54972 -12.32515 -12.11559 -11.71076 -11.52004 -11.36805 -11.27723 -11.17524 -11.13480 -10.91990 -10.74971 -10.55653 -10.24150 -9.86325 -9.68349 -9.53877 -9.08572 -8.99879 -8.47411 -8.39541 -7.47049 -6.08546 -4.12940 0.74189 1.04203 1.71988 1.97876 2.22146 3.26579 3.34346 3.39153 3.56077 3.73639 4.22040 4.35911 4.36157 4.48640 4.54280 4.60580 4.65527 4.85168 4.86842 4.95873 5.10832 5.19901 5.20880 5.25675 5.35777 5.39146 5.42032 5.48788 5.51699 5.59319 5.62165 5.79555 5.81700 5.88597 5.91334 6.01017 6.09755 6.16121 6.30355 6.41571 6.54188 6.59665 6.78888 7.02940 7.09470 7.10526 7.16109 7.44447 7.62547 7.77585 7.87026 8.25967 8.92545 9.51238 11.01126 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.002378 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.163682 B =11770.995312 C =12025.748352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.021 4.021 11 C -0.125 4.125 12 C -0.105 4.105 13 C -0.093 4.093 14 C -0.021 4.021 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.150 4.150 19 C -0.081 4.081 20 C 0.412 3.588 21 O -0.445 6.445 22 C -0.161 4.161 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.087 4.087 26 C -0.106 4.106 27 C -0.124 4.124 28 H 0.262 0.738 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.066 -20.256 0.500 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.021 4.021 11 C -0.143 4.143 12 C -0.122 4.122 13 C -0.093 4.093 14 C -0.021 4.021 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.066 4.066 18 C -0.151 4.151 19 C -0.099 4.099 20 C 0.286 3.714 21 O -0.317 6.317 22 C -0.199 4.199 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.142 4.142 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.547 -20.460 0.067 26.954 hybrid contribution 0.371 1.153 0.064 1.213 sum 17.918 -19.306 0.131 26.340 Atomic orbital electron populations 1.69969 1.06042 1.26790 1.50419 1.25021 0.94899 0.99315 0.95125 0.86470 0.80135 0.83405 0.77669 1.19641 1.20898 1.20903 1.21070 0.93074 0.89736 1.51105 0.92383 1.18420 0.92624 0.89651 0.98564 1.20833 0.95115 0.94259 0.91907 1.21049 0.98244 0.96448 0.98545 1.21081 0.97780 0.96921 0.96468 1.18464 0.99679 0.97151 0.93965 1.18809 0.95739 0.94918 0.92616 1.21440 0.96725 0.95870 0.97863 1.20879 0.98092 0.96919 0.97212 1.19919 0.97604 0.97298 0.91776 1.20112 1.00574 0.99925 0.94497 1.21213 0.95277 0.95020 0.98381 1.22847 0.90463 0.74144 0.83906 1.90561 1.62955 1.31330 1.46845 1.21865 0.93032 1.02147 1.02882 1.20849 1.00267 0.98639 0.95103 1.21323 0.96489 1.02830 0.95034 1.20848 0.93791 0.95033 1.02703 1.21101 0.97769 0.96946 0.96529 1.21050 0.98128 0.96444 0.98594 0.92834 0.95159 0.95160 0.86062 0.86662 0.85251 0.85423 0.85239 0.88731 0.88923 0.90617 0.91696 0.91000 0.90900 0.90208 0.90884 0.86815 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.04 1.12 5.10 -29.03 -0.15 0.97 16 10 C -0.02 -0.45 5.07 -104.56 -0.53 -0.98 16 11 C -0.12 -2.36 9.68 -39.63 -0.38 -2.75 16 12 C -0.10 -1.69 9.43 -39.25 -0.37 -2.06 16 13 C -0.09 -1.48 5.88 -104.90 -0.62 -2.10 16 14 C -0.02 -0.29 5.87 -104.91 -0.62 -0.90 16 15 C -0.10 -1.17 9.42 -39.10 -0.37 -1.54 16 16 C -0.11 -1.11 9.67 -39.70 -0.38 -1.49 16 17 C -0.07 -0.66 5.10 -103.75 -0.53 -1.19 16 18 C -0.15 -1.77 5.49 -105.22 -0.58 -2.34 16 19 C -0.08 -1.06 9.20 -38.77 -0.36 -1.42 16 20 C 0.41 4.65 5.51 -30.13 -0.17 4.48 16 21 O -0.44 -6.45 17.93 5.58 0.10 -6.35 16 22 C -0.16 -1.24 5.79 -28.55 -0.17 -1.40 16 23 C -0.11 -0.67 5.29 -28.27 -0.15 -0.82 16 24 C -0.12 -0.70 5.59 -27.45 -0.15 -0.85 16 25 C -0.09 -0.63 5.41 -27.60 -0.15 -0.78 16 26 C -0.11 -1.77 9.42 -39.26 -0.37 -2.14 16 27 C -0.12 -2.39 9.68 -39.63 -0.38 -2.77 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 32 H 0.12 1.52 6.19 -52.49 -0.32 1.19 16 33 H 0.13 1.32 6.18 -52.48 -0.32 0.99 16 34 H 0.13 0.91 7.98 -52.49 -0.42 0.49 16 35 H 0.13 1.65 6.21 -52.49 -0.33 1.33 16 36 H 0.09 0.65 8.13 -51.93 -0.42 0.22 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 40 H 0.07 0.45 7.84 -51.93 -0.41 0.05 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 43 H 0.07 0.58 7.58 -51.93 -0.39 0.18 16 44 H 0.11 1.63 6.20 -52.49 -0.33 1.31 16 45 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.42 368.15 -11.72 -43.14 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.26 Total: -0.22 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: -6.83 Total: -33.02 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.10 Total: -6.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.42 -11.72 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245597967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.326 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds