Wall clock time and date at job start Tue Mar 31 2020 12:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99737 * 2 1 4 4 H 1.48503 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46993 * 299.99763 * 3 2 1 6 6 H 1.48496 * 109.47080 * 59.99758 * 3 2 1 7 7 C 1.37877 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99534 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.38320 * 119.87833 * 89.99889 * 10 9 7 12 12 C 1.38026 * 120.11975 * 180.02562 * 11 10 9 13 13 C 1.39333 * 119.87542 * 359.97438 * 12 11 10 14 14 C 1.48408 * 120.11687 * 179.97438 * 13 12 11 15 15 C 1.39496 * 119.99369 * 359.97438 * 14 13 12 16 16 C 1.38286 * 120.32003 * 179.36003 * 15 14 13 17 17 C 1.37853 * 119.94761 * 0.35332 * 16 15 14 18 18 C 1.39451 * 120.33038 * 0.48455 * 17 16 15 19 19 C 1.39119 * 119.99187 * 180.02562 * 14 13 12 20 20 C 1.47415 * 119.43631 * 176.48738 * 18 17 16 21 21 O 1.21251 * 121.03932 * 114.75566 * 20 18 17 22 22 C 1.51604 * 117.72587 * 294.87834 * 20 18 17 23 23 C 1.50787 * 110.15216 * 81.38933 * 22 20 18 24 24 C 1.52158 * 114.12896 * 295.41682 * 23 22 20 25 25 C 1.51843 * 119.97706 * 181.64444 * 17 16 15 26 26 C 1.39321 * 119.76236 * 0.25850 * 13 12 11 27 27 C 1.38029 * 119.87696 * 359.46591 * 26 13 12 28 28 H 0.97002 * 119.99848 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47104 * 60.00080 * 9 7 2 30 30 H 1.08997 * 109.47039 * 299.99906 * 9 7 2 31 31 H 1.08001 * 119.94017 * 359.97438 * 11 10 9 32 32 H 1.07994 * 120.05754 * 180.02562 * 12 11 10 33 33 H 1.08008 * 119.84349 * 359.33498 * 15 14 13 34 34 H 1.08001 * 120.02666 * 180.38203 * 16 15 14 35 35 H 1.08002 * 120.31787 * 359.82922 * 19 14 13 36 36 H 1.09000 * 109.35756 * 321.18503 * 22 20 18 37 37 H 1.08998 * 109.36343 * 201.60230 * 22 20 18 38 38 H 1.08999 * 108.55269 * 174.21332 * 23 22 20 39 39 H 1.09003 * 108.55155 * 56.61850 * 23 22 20 40 40 H 1.08997 * 109.08039 * 310.83685 * 24 23 22 41 41 H 1.09001 * 109.07875 * 191.86031 * 24 23 22 42 42 H 1.08999 * 109.50685 * 8.49666 * 25 17 16 43 43 H 1.08998 * 109.49837 * 128.56731 * 25 17 16 44 44 H 1.08001 * 120.06362 * 179.74885 * 26 13 12 45 45 H 1.07997 * 119.94031 * 180.27216 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6773 -4.1678 1.2017 12 6 3.5746 -5.2165 1.2087 13 6 4.0298 -5.7485 0.0041 14 6 4.9951 -6.8757 0.0053 15 6 5.4486 -7.4041 1.2141 16 6 6.3378 -8.4631 1.2231 17 6 6.7854 -8.9961 0.0332 18 6 6.3537 -8.4663 -1.1823 19 6 5.4483 -7.4045 -1.1990 20 6 6.9041 -8.9998 -2.4415 21 8 6.1980 -9.5864 -3.2336 22 6 8.3818 -8.7920 -2.7093 23 6 9.1935 -9.8310 -1.9776 24 6 9.1010 -9.7384 -0.4617 25 6 7.7327 -10.1829 0.0422 26 6 3.5801 -5.2144 -1.2016 27 6 2.6784 -4.1694 -1.1969 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.3240 -3.7544 2.1349 32 1 3.9225 -5.6245 2.1462 33 1 5.1038 -6.9839 2.1474 34 1 6.6811 -8.8726 2.1617 35 1 5.0990 -7.0004 -2.1377 36 1 8.6746 -7.7990 -2.3685 37 1 8.5701 -8.8744 -3.7797 38 1 10.2383 -9.7230 -2.2686 39 1 8.8514 -10.8189 -2.2862 40 1 9.2752 -8.7066 -0.1565 41 1 9.8676 -10.3741 -0.0185 42 1 7.8259 -10.5665 1.0581 43 1 7.3414 -10.9655 -0.6078 44 1 3.9330 -5.6203 -2.1382 45 1 2.3258 -3.7576 -2.1309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245597967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:11 Heat of formation + Delta-G solvation = -28.511513 kcal Electronic energy + Delta-G solvation = -25070.158212 eV Core-core repulsion = 21594.280919 eV Total energy + Delta-G solvation = -3475.877293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62479 -40.37773 -39.10231 -37.05993 -35.52661 -33.98451 -32.82023 -32.17115 -31.57667 -30.53076 -28.50482 -26.18371 -25.36687 -24.73570 -23.67473 -22.69657 -21.92556 -21.21393 -20.18682 -18.56966 -18.35736 -17.29544 -17.09468 -16.69515 -16.46188 -16.20130 -15.72441 -15.62353 -15.09151 -15.02347 -14.82318 -14.65115 -14.52277 -14.40426 -14.21513 -13.93706 -13.85674 -13.31002 -13.25470 -13.19208 -12.96751 -12.63410 -12.51551 -12.45013 -12.27528 -11.88394 -11.66094 -11.62205 -11.55922 -11.53596 -11.42305 -10.72242 -10.63339 -10.24207 -9.94311 -9.80802 -8.79233 -8.21224 -6.36179 -0.27710 0.10361 0.55474 0.82070 1.02598 1.38320 1.38845 1.52447 2.37446 2.59265 2.92736 3.08175 3.13716 3.54776 3.68302 3.76048 3.84741 3.92321 4.04017 4.10547 4.13494 4.21911 4.29225 4.36325 4.40403 4.47435 4.59183 4.64810 4.71243 4.80460 4.84842 4.91855 4.97466 5.03726 5.08105 5.09913 5.17541 5.24474 5.27058 5.31151 5.35629 5.38159 5.42318 5.51315 5.58554 5.72428 5.76396 5.91307 6.03453 6.07503 6.21104 6.31480 6.76568 7.32575 8.86955 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022500 B = 0.002378 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.163682 B =11770.995312 C =12025.748352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.058 4.058 11 C -0.132 4.132 12 C -0.099 4.099 13 C -0.078 4.078 14 C -0.049 4.049 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.055 4.055 18 C -0.168 4.168 19 C -0.092 4.092 20 C 0.413 3.587 21 O -0.487 6.487 22 C -0.158 4.158 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.088 4.088 26 C -0.110 4.110 27 C -0.135 4.135 28 H 0.266 0.734 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.134 0.866 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.905 -22.014 1.988 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.017 3.983 10 C -0.058 4.058 11 C -0.150 4.150 12 C -0.117 4.117 13 C -0.078 4.078 14 C -0.049 4.049 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.056 4.056 18 C -0.169 4.169 19 C -0.110 4.110 20 C 0.291 3.709 21 O -0.363 6.363 22 C -0.195 4.195 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.153 4.153 28 H 0.075 0.925 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.139 0.861 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.152 0.848 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.401 -22.222 1.561 30.891 hybrid contribution -0.723 1.493 -0.395 1.705 sum 20.677 -20.730 1.167 29.302 Atomic orbital electron populations 1.70091 1.07681 1.27943 1.51297 1.25949 0.95793 1.03181 0.94555 0.85368 0.78900 0.78620 0.78007 1.18910 1.20203 1.19995 1.21376 0.93036 0.91132 1.50950 0.92775 1.18142 0.92945 0.91246 0.95947 1.20514 0.96608 0.94798 0.93917 1.21100 0.98996 0.97398 0.97523 1.21367 0.96486 0.95634 0.98195 1.18790 0.98695 0.96868 0.93422 1.18723 0.96881 0.95359 0.93914 1.21705 0.96429 0.95947 0.97495 1.21275 0.96918 0.95911 0.98538 1.20356 0.96790 0.97282 0.91126 1.20326 1.00833 0.99955 0.95746 1.21239 0.95871 0.95825 0.98088 1.23390 0.91914 0.72563 0.83039 1.90547 1.64265 1.33468 1.47989 1.21923 0.90441 1.03410 1.03756 1.20904 1.01079 0.97590 0.95284 1.21336 0.96062 1.03299 0.94721 1.20983 0.93822 0.93529 1.04205 1.21294 0.97094 0.96155 0.98194 1.21028 0.99085 0.97491 0.97660 0.92523 0.97948 0.97560 0.86073 0.82966 0.83588 0.81868 0.86018 0.87652 0.88362 0.88330 0.92113 0.91033 0.88555 0.87802 0.91621 0.84800 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -30.40 9.09 25.60 0.23 -30.17 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.05 2.94 5.10 29.10 0.15 3.09 16 10 C -0.06 -2.63 5.07 -19.83 -0.10 -2.73 16 11 C -0.13 -5.11 9.68 22.24 0.22 -4.90 16 12 C -0.10 -3.09 9.43 22.48 0.21 -2.88 16 13 C -0.08 -2.42 5.88 -20.04 -0.12 -2.54 16 14 C -0.05 -1.26 5.87 -20.05 -0.12 -1.37 16 15 C -0.10 -1.94 9.42 22.58 0.21 -1.73 16 16 C -0.11 -1.67 9.67 22.19 0.21 -1.46 16 17 C -0.06 -0.93 5.10 -19.30 -0.10 -1.03 16 18 C -0.17 -3.68 5.49 -20.25 -0.11 -3.79 16 19 C -0.09 -2.34 9.20 22.80 0.21 -2.13 16 20 C 0.41 8.92 5.51 28.39 0.16 9.08 16 21 O -0.49 -14.23 17.93 -2.94 -0.05 -14.28 16 22 C -0.16 -2.09 5.79 29.42 0.17 -1.92 16 23 C -0.11 -0.97 5.29 29.60 0.16 -0.81 16 24 C -0.12 -0.88 5.59 30.13 0.17 -0.71 16 25 C -0.09 -0.94 5.41 30.03 0.16 -0.78 16 26 C -0.11 -3.72 9.42 22.48 0.21 -3.51 16 27 C -0.13 -5.46 9.68 22.24 0.22 -5.24 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.00 0.13 8.08 -2.39 -0.02 0.11 16 30 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 32 H 0.15 3.53 6.19 -2.91 -0.02 3.51 16 33 H 0.15 2.35 6.18 -2.91 -0.02 2.33 16 34 H 0.16 1.37 7.98 -2.91 -0.02 1.35 16 35 H 0.12 3.14 6.21 -2.91 -0.02 3.13 16 36 H 0.11 1.18 8.13 -2.39 -0.02 1.16 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 0.61 7.92 -2.39 -0.02 0.59 16 40 H 0.07 0.59 7.84 -2.39 -0.02 0.57 16 41 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.10 0.64 7.92 -2.39 -0.02 0.62 16 43 H 0.07 0.84 7.58 -2.39 -0.02 0.83 16 44 H 0.13 3.90 6.20 -2.91 -0.02 3.88 16 45 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -72.03 368.15 5.86 -66.17 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.99 Total: 12.59 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 2.60 Total: -54.86 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.05 Total: -14.28 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.03 5.86 -66.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245597967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.661 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds