Wall clock time and date at job start Tue Mar 31 2020 12:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36272 * 119.93829 * 2 1 4 4 C 1.40913 * 119.87964 * 179.97438 * 3 2 1 5 5 C 1.41028 * 120.12310 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00188 * 24.55235 * 5 4 3 7 7 C 1.40014 * 120.00259 * 204.55802 * 5 4 3 8 8 N 1.30805 * 119.99486 * 17.80869 * 7 5 4 9 9 Si 1.86789 * 120.00410 * 197.80691 * 7 5 4 10 10 H 1.48507 * 109.46986 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47359 * 119.99812 * 9 7 5 12 12 H 1.48503 * 109.47555 * 239.99859 * 9 7 5 13 13 C 1.40950 * 119.75845 * 359.73012 * 4 3 2 14 14 C 1.36243 * 119.87700 * 0.52443 * 13 4 3 15 15 C 1.39908 * 119.94052 * 179.97438 * 2 1 3 16 16 C 1.48015 * 119.87547 * 0.02562 * 15 2 1 17 17 C 1.39747 * 120.00463 * 309.74676 * 16 15 2 18 18 C 1.38207 * 120.25523 * 180.27219 * 17 16 15 19 19 C 1.37871 * 119.96504 * 0.83005 * 18 17 16 20 20 C 1.39538 * 120.47822 * 358.59172 * 19 18 17 21 21 C 1.39368 * 119.99869 * 130.02838 * 16 15 2 22 22 C 1.47324 * 119.66712 * 182.46143 * 20 19 18 23 23 O 1.21250 * 121.22739 * 246.00890 * 22 20 19 24 24 C 1.51643 * 117.53802 * 65.98784 * 22 20 19 25 25 C 1.50796 * 110.06183 * 278.75186 * 24 22 20 26 26 C 1.52114 * 114.14882 * 64.43233 * 25 24 22 27 27 C 1.51933 * 120.00270 * 177.60105 * 19 18 17 28 28 H 1.08996 * 109.46614 * 270.01647 * 1 2 3 29 29 H 1.09000 * 109.47196 * 30.01828 * 1 2 3 30 30 H 1.09003 * 109.46883 * 150.01993 * 1 2 3 31 31 H 1.08003 * 120.06196 * 359.95621 * 3 2 1 32 32 H 0.96999 * 119.99355 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.06223 * 180.27561 * 13 4 3 34 34 H 1.07997 * 119.93860 * 179.77578 * 14 13 4 35 35 H 1.08004 * 119.87240 * 0.53387 * 17 16 15 36 36 H 1.08006 * 120.01945 * 180.52864 * 18 17 16 37 37 H 1.08003 * 120.31003 * 359.46216 * 21 16 15 38 38 H 1.09005 * 109.37442 * 38.93254 * 24 22 20 39 39 H 1.08992 * 109.37577 * 158.56959 * 24 22 20 40 40 H 1.08999 * 108.54280 * 185.63593 * 25 24 22 41 41 H 1.08992 * 108.54738 * 303.37437 * 25 24 22 42 42 H 1.08999 * 109.07340 * 48.87636 * 26 25 24 43 43 H 1.09005 * 109.07204 * 167.83000 * 26 25 24 44 44 H 1.09002 * 109.50467 * 352.13195 * 27 19 18 45 45 H 1.08997 * 109.54007 * 232.02990 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 0.0005 5 6 4.3052 2.3985 0.0011 6 1 3.8412 3.2929 0.3897 7 6 5.6108 2.4494 -0.5023 8 7 6.0507 1.4916 -1.2770 9 14 6.7241 3.8849 -0.0678 10 1 5.9938 4.8275 0.8173 11 1 7.9307 3.3803 0.6357 12 1 7.1334 4.5878 -1.3102 13 6 4.2946 -0.0449 0.0069 14 6 3.6047 -1.2197 0.0016 15 6 2.2053 -1.2124 0.0005 16 6 1.4611 -2.4918 0.0005 17 6 0.4405 -2.7067 0.9307 18 6 -0.2539 -3.9016 0.9390 19 6 0.0713 -4.8933 0.0381 20 6 1.0796 -4.6900 -0.9048 21 6 1.7822 -3.4847 -0.9233 22 6 1.3756 -5.7410 -1.8940 23 8 2.4363 -6.3283 -1.8888 24 6 0.3044 -6.0613 -2.9184 25 6 -0.7262 -6.9840 -2.3180 26 6 -1.5136 -6.3736 -1.1685 27 6 -0.6545 -6.2273 0.0819 28 1 -0.3632 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6471 2.1162 -0.0007 32 1 6.9550 1.5271 -1.6261 33 1 5.3746 -0.0517 0.0118 34 1 4.1388 -2.1584 0.0027 35 1 0.1906 -1.9343 1.6431 36 1 -1.0477 -4.0603 1.6540 37 1 2.5672 -3.3225 -1.6471 38 1 -0.1791 -5.1377 -3.2369 39 1 0.7624 -6.5438 -3.7817 40 1 -1.4261 -7.2779 -3.1002 41 1 -0.2205 -7.8779 -1.9529 42 1 -1.8769 -5.3906 -1.4681 43 1 -2.3666 -7.0133 -0.9418 44 1 -1.2898 -6.2671 0.9668 45 1 0.0736 -7.0375 0.1201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245599328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:14 Heat of formation + Delta-G solvation = -22.367449 kcal Electronic energy + Delta-G solvation = -25826.844398 eV Core-core repulsion = 22351.233532 eV Total energy + Delta-G solvation = -3475.610866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36224 -38.58117 -37.45356 -35.98309 -34.13133 -32.21634 -31.64909 -30.84308 -30.20381 -28.70249 -25.94633 -25.83378 -24.27030 -23.57918 -22.15172 -20.72667 -20.25193 -20.21366 -18.88029 -17.05214 -16.76035 -16.11723 -15.49745 -15.35702 -15.06857 -14.68313 -14.23794 -13.96836 -13.79332 -13.69890 -13.62323 -13.52436 -13.25128 -12.73694 -12.56573 -12.43255 -12.06319 -12.00497 -11.73199 -11.67627 -11.43972 -11.29326 -11.10043 -11.00426 -10.97287 -10.86579 -10.80559 -10.46997 -10.33187 -9.78127 -9.55898 -9.44825 -9.28446 -8.61595 -8.31225 -7.49763 -7.17184 -6.89796 -4.44496 1.29558 1.61783 2.07226 2.68171 3.00486 3.01947 3.05942 3.10887 3.83150 3.95265 4.08834 4.47822 4.51718 4.63958 4.76744 4.92949 5.02737 5.22599 5.29415 5.39990 5.49571 5.55090 5.55885 5.67957 5.72426 5.74263 5.82216 5.85691 5.90646 5.95086 5.98967 6.09911 6.18713 6.30397 6.31279 6.39420 6.53203 6.64643 6.72726 6.88771 6.89941 6.99391 7.18991 7.26615 7.29424 7.46776 7.54873 7.83499 7.96337 8.04831 8.17507 8.52420 8.75845 8.86906 10.03059 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.002936 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.651963 B = 9534.347594 C =10297.085520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.036 4.036 3 C -0.228 4.228 4 C 0.120 3.880 5 C -0.452 4.452 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.781 5.781 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.270 1.270 12 H -0.273 1.273 13 C -0.172 4.172 14 C -0.074 4.074 15 C -0.207 4.207 16 C 0.017 3.983 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.082 4.082 20 C -0.153 4.153 21 C -0.088 4.088 22 C 0.414 3.586 23 O -0.449 6.449 24 C -0.162 4.162 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.283 0.717 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 -11.224 -0.099 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.036 4.036 3 C -0.247 4.247 4 C 0.118 3.882 5 C -0.480 4.480 6 H 0.099 0.901 7 C -0.145 4.145 8 N -0.405 5.405 9 Si 0.733 3.267 10 H -0.182 1.182 11 H -0.195 1.195 12 H -0.198 1.198 13 C -0.192 4.192 14 C -0.093 4.093 15 C -0.208 4.208 16 C 0.016 3.984 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.082 4.082 20 C -0.154 4.154 21 C -0.106 4.106 22 C 0.289 3.711 23 O -0.322 6.322 24 C -0.200 4.200 25 C -0.147 4.147 26 C -0.156 4.156 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.590 -11.609 -0.256 16.406 hybrid contribution 0.667 0.774 0.043 1.022 sum -10.924 -10.835 -0.213 15.387 Atomic orbital electron populations 1.20815 0.93817 1.01198 1.00634 1.19056 0.93473 0.92685 0.98391 1.20521 0.94197 0.95365 1.14615 1.17683 0.90928 0.93205 0.86434 1.19681 0.97466 0.96118 1.34740 0.90119 1.26006 0.98537 0.97411 0.92560 1.69829 1.17775 1.31609 1.21303 0.86237 0.79869 0.81147 0.79406 1.18244 1.19543 1.19839 1.20981 0.99739 0.91364 1.07068 1.20449 0.92440 0.97053 0.99312 1.17862 0.92460 0.89598 1.20865 1.18897 0.93667 0.93384 0.92403 1.21547 0.96090 0.96749 0.98157 1.20786 1.00285 0.93462 0.98985 1.19763 0.95937 0.95968 0.96542 1.20048 0.99468 0.96591 0.99305 1.21347 0.98536 0.91875 0.98880 1.22815 0.86371 0.79248 0.82678 1.90539 1.25664 1.46409 1.69570 1.21880 0.97237 1.02453 0.98423 1.20828 0.97137 0.98249 0.98470 1.21312 0.98054 1.01971 0.94281 1.20796 0.98349 0.94292 0.98582 0.92582 0.92898 0.92528 0.88815 0.90603 0.86434 0.89320 0.85875 0.86170 0.85907 0.88810 0.89219 0.90870 0.91860 0.91063 0.91243 0.90595 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.43 36.01 0.30 -1.55 16 2 C -0.04 -0.77 5.83 -104.70 -0.61 -1.38 16 3 C -0.23 -5.40 9.36 -39.28 -0.37 -5.77 16 4 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 5 C -0.45 -11.59 9.03 -37.86 -0.34 -11.93 16 6 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 7 C 0.07 1.81 5.13 -17.32 -0.09 1.72 16 8 N -0.78 -19.66 10.96 55.55 0.61 -19.05 16 9 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 10 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 13 C -0.17 -4.40 8.63 -39.27 -0.34 -4.74 16 14 C -0.07 -1.73 9.43 -39.66 -0.37 -2.11 16 15 C -0.21 -4.48 5.49 -104.63 -0.57 -5.06 16 16 C 0.02 0.31 4.70 -104.90 -0.49 -0.19 16 17 C -0.11 -1.71 7.90 -39.03 -0.31 -2.02 16 18 C -0.12 -1.58 9.66 -39.73 -0.38 -1.96 16 19 C -0.08 -1.10 5.11 -103.66 -0.53 -1.63 16 20 C -0.15 -2.38 5.47 -105.23 -0.58 -2.95 16 21 C -0.09 -1.58 9.27 -38.68 -0.36 -1.93 16 22 C 0.41 6.04 5.52 -30.15 -0.17 5.87 16 23 O -0.45 -7.98 17.93 5.58 0.10 -7.88 16 24 C -0.16 -1.69 5.79 -28.52 -0.17 -1.86 16 25 C -0.11 -0.92 5.29 -28.29 -0.15 -1.07 16 26 C -0.12 -0.99 5.58 -27.48 -0.15 -1.15 16 27 C -0.08 -0.84 5.42 -27.57 -0.15 -0.99 16 28 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 29 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 31 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 32 H 0.28 6.44 8.29 -40.82 -0.34 6.11 16 33 H 0.12 3.11 6.17 -52.48 -0.32 2.78 16 34 H 0.09 1.96 8.03 -52.49 -0.42 1.54 16 35 H 0.12 1.87 6.80 -52.48 -0.36 1.52 16 36 H 0.12 1.27 7.98 -52.48 -0.42 0.86 16 37 H 0.12 2.28 8.04 -52.48 -0.42 1.86 16 38 H 0.09 0.91 8.13 -51.93 -0.42 0.48 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 42 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 45 H 0.07 0.74 7.58 -51.93 -0.39 0.35 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -28.14 363.50 -11.63 -39.77 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.37 Total: 6.83 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -6.42 Total: -38.17 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.10 Total: -7.88 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.14 -11.63 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245599328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.406 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds