Wall clock time and date at job start Tue Mar 31 2020 12:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36272 * 119.93829 * 2 1 4 4 C 1.40913 * 119.87964 * 179.97438 * 3 2 1 5 5 C 1.41028 * 120.12310 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00188 * 24.55235 * 5 4 3 7 7 C 1.40014 * 120.00259 * 204.55802 * 5 4 3 8 8 N 1.30805 * 119.99486 * 17.80869 * 7 5 4 9 9 Si 1.86789 * 120.00410 * 197.80691 * 7 5 4 10 10 H 1.48507 * 109.46986 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47359 * 119.99812 * 9 7 5 12 12 H 1.48503 * 109.47555 * 239.99859 * 9 7 5 13 13 C 1.40950 * 119.75845 * 359.73012 * 4 3 2 14 14 C 1.36243 * 119.87700 * 0.52443 * 13 4 3 15 15 C 1.39908 * 119.94052 * 179.97438 * 2 1 3 16 16 C 1.48015 * 119.87547 * 0.02562 * 15 2 1 17 17 C 1.39747 * 120.00463 * 309.74676 * 16 15 2 18 18 C 1.38207 * 120.25523 * 180.27219 * 17 16 15 19 19 C 1.37871 * 119.96504 * 0.83005 * 18 17 16 20 20 C 1.39538 * 120.47822 * 358.59172 * 19 18 17 21 21 C 1.39368 * 119.99869 * 130.02838 * 16 15 2 22 22 C 1.47324 * 119.66712 * 182.46143 * 20 19 18 23 23 O 1.21250 * 121.22739 * 246.00890 * 22 20 19 24 24 C 1.51643 * 117.53802 * 65.98784 * 22 20 19 25 25 C 1.50796 * 110.06183 * 278.75186 * 24 22 20 26 26 C 1.52114 * 114.14882 * 64.43233 * 25 24 22 27 27 C 1.51933 * 120.00270 * 177.60105 * 19 18 17 28 28 H 1.08996 * 109.46614 * 270.01647 * 1 2 3 29 29 H 1.09000 * 109.47196 * 30.01828 * 1 2 3 30 30 H 1.09003 * 109.46883 * 150.01993 * 1 2 3 31 31 H 1.08003 * 120.06196 * 359.95621 * 3 2 1 32 32 H 0.96999 * 119.99355 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.06223 * 180.27561 * 13 4 3 34 34 H 1.07997 * 119.93860 * 179.77578 * 14 13 4 35 35 H 1.08004 * 119.87240 * 0.53387 * 17 16 15 36 36 H 1.08006 * 120.01945 * 180.52864 * 18 17 16 37 37 H 1.08003 * 120.31003 * 359.46216 * 21 16 15 38 38 H 1.09005 * 109.37442 * 38.93254 * 24 22 20 39 39 H 1.08992 * 109.37577 * 158.56959 * 24 22 20 40 40 H 1.08999 * 108.54280 * 185.63593 * 25 24 22 41 41 H 1.08992 * 108.54738 * 303.37437 * 25 24 22 42 42 H 1.08999 * 109.07340 * 48.87636 * 26 25 24 43 43 H 1.09005 * 109.07204 * 167.83000 * 26 25 24 44 44 H 1.09002 * 109.50467 * 352.13195 * 27 19 18 45 45 H 1.08997 * 109.54007 * 232.02990 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5962 1.1794 0.0005 5 6 4.3052 2.3985 0.0011 6 1 3.8412 3.2929 0.3897 7 6 5.6108 2.4494 -0.5023 8 7 6.0507 1.4916 -1.2770 9 14 6.7241 3.8849 -0.0678 10 1 5.9938 4.8275 0.8173 11 1 7.9307 3.3803 0.6357 12 1 7.1334 4.5878 -1.3102 13 6 4.2946 -0.0449 0.0069 14 6 3.6047 -1.2197 0.0016 15 6 2.2053 -1.2124 0.0005 16 6 1.4611 -2.4918 0.0005 17 6 0.4405 -2.7067 0.9307 18 6 -0.2539 -3.9016 0.9390 19 6 0.0713 -4.8933 0.0381 20 6 1.0796 -4.6900 -0.9048 21 6 1.7822 -3.4847 -0.9233 22 6 1.3756 -5.7410 -1.8940 23 8 2.4363 -6.3283 -1.8888 24 6 0.3044 -6.0613 -2.9184 25 6 -0.7262 -6.9840 -2.3180 26 6 -1.5136 -6.3736 -1.1685 27 6 -0.6545 -6.2273 0.0819 28 1 -0.3632 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6471 2.1162 -0.0007 32 1 6.9550 1.5271 -1.6261 33 1 5.3746 -0.0517 0.0118 34 1 4.1388 -2.1584 0.0027 35 1 0.1906 -1.9343 1.6431 36 1 -1.0477 -4.0603 1.6540 37 1 2.5672 -3.3225 -1.6471 38 1 -0.1791 -5.1377 -3.2369 39 1 0.7624 -6.5438 -3.7817 40 1 -1.4261 -7.2779 -3.1002 41 1 -0.2205 -7.8779 -1.9529 42 1 -1.8769 -5.3906 -1.4681 43 1 -2.3666 -7.0133 -0.9418 44 1 -1.2898 -6.2671 0.9668 45 1 0.0736 -7.0375 0.1201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245599328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:13 Heat of formation + Delta-G solvation = -33.479820 kcal Electronic energy + Delta-G solvation = -25827.326267 eV Core-core repulsion = 22351.233532 eV Total energy + Delta-G solvation = -3476.092735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52834 -40.10430 -38.89878 -37.00040 -35.80394 -33.48090 -33.23083 -32.24301 -31.49097 -30.07374 -27.60807 -27.25265 -25.49723 -24.74662 -23.44520 -22.16057 -21.96277 -21.21751 -20.16799 -18.87051 -18.03326 -17.25249 -17.05598 -16.61565 -16.33476 -15.97363 -15.61396 -15.47513 -15.15546 -14.85345 -14.66812 -14.63486 -14.42980 -14.19380 -14.01364 -13.79255 -13.53722 -13.31931 -13.15368 -13.09133 -12.81801 -12.68687 -12.54170 -12.41327 -12.18648 -11.99252 -11.77633 -11.60412 -11.58628 -11.40847 -11.30312 -11.09037 -10.68316 -9.86029 -9.74824 -9.31542 -8.88739 -8.70694 -6.36662 0.05917 0.29382 0.86983 1.03678 1.13980 1.35584 1.48939 1.51772 2.16356 2.59432 2.80601 3.00878 3.65687 3.67527 3.82359 3.93575 3.99832 4.07150 4.17381 4.30481 4.33248 4.36685 4.40327 4.50346 4.60236 4.68467 4.71028 4.81831 4.88408 4.95443 4.97643 5.01099 5.04979 5.07996 5.11931 5.14643 5.19225 5.25944 5.28051 5.36391 5.45674 5.48153 5.58622 5.64852 5.75166 5.91346 6.07745 6.12331 6.21416 6.32472 6.33547 6.63997 6.86576 6.99165 8.24921 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.022545 B = 0.002936 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.651963 B = 9534.347594 C =10297.085520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.041 4.041 3 C -0.243 4.243 4 C 0.089 3.911 5 C -0.490 4.490 6 H 0.081 0.919 7 C 0.033 3.967 8 N -0.820 5.820 9 Si 0.985 3.015 10 H -0.254 1.254 11 H -0.265 1.265 12 H -0.264 1.264 13 C -0.197 4.197 14 C -0.088 4.088 15 C -0.196 4.196 16 C -0.014 4.014 17 C -0.103 4.103 18 C -0.106 4.106 19 C -0.067 4.067 20 C -0.166 4.166 21 C -0.106 4.106 22 C 0.413 3.587 23 O -0.492 6.492 24 C -0.156 4.156 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.289 0.711 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.163 0.837 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 -12.852 0.632 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.041 4.041 3 C -0.262 4.262 4 C 0.086 3.914 5 C -0.519 4.519 6 H 0.099 0.901 7 C -0.183 4.183 8 N -0.445 5.445 9 Si 0.805 3.195 10 H -0.178 1.178 11 H -0.190 1.190 12 H -0.189 1.189 13 C -0.216 4.216 14 C -0.106 4.106 15 C -0.197 4.197 16 C -0.014 4.014 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.067 4.067 20 C -0.167 4.167 21 C -0.124 4.124 22 C 0.291 3.709 23 O -0.368 6.368 24 C -0.194 4.194 25 C -0.147 4.147 26 C -0.154 4.154 27 C -0.122 4.122 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.181 0.819 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.443 -13.244 0.471 20.349 hybrid contribution 1.680 1.020 -0.180 1.974 sum -13.763 -12.223 0.291 18.410 Atomic orbital electron populations 1.20815 0.90100 1.02224 1.02503 1.19543 0.96228 0.91634 0.96671 1.20749 0.93619 0.96745 1.15080 1.18013 0.92296 0.93476 0.87574 1.19900 0.99041 0.96164 1.36766 0.90131 1.26884 0.99460 1.00217 0.91737 1.69894 1.18483 1.33712 1.22419 0.85118 0.77552 0.77516 0.79304 1.17765 1.19005 1.18884 1.20895 0.98970 0.92404 1.09361 1.20613 0.93904 0.96396 0.99709 1.18235 0.91867 0.91688 1.17934 1.18745 0.95573 0.92304 0.94738 1.21670 0.94973 0.98175 0.97264 1.21214 1.00299 0.91893 0.98989 1.20284 0.94307 0.97586 0.94516 1.20294 0.99918 0.95914 1.00556 1.21203 0.98847 0.93305 0.99068 1.23433 0.86580 0.78027 0.82878 1.90525 1.27542 1.47965 1.70744 1.21937 0.96446 1.03671 0.97356 1.20898 0.96918 0.97343 0.99506 1.21331 0.98367 1.02664 0.92994 1.20956 0.98592 0.91551 1.01058 0.90086 0.91875 0.91457 0.88033 0.90000 0.88490 0.89267 0.84872 0.81923 0.88433 0.87788 0.88412 0.88035 0.92127 0.91090 0.88299 0.87792 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.22 8.43 71.24 0.60 -2.61 16 2 C -0.04 -1.76 5.83 -19.92 -0.12 -1.88 16 3 C -0.24 -11.92 9.36 22.47 0.21 -11.71 16 4 C 0.09 4.90 5.57 -21.28 -0.12 4.78 16 5 C -0.49 -26.63 9.03 23.38 0.21 -26.42 16 6 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 7 C 0.03 1.67 5.13 85.28 0.44 2.11 16 8 N -0.82 -43.88 10.96 21.84 0.24 -43.64 16 9 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 10 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 11 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 13 C -0.20 -10.87 8.63 22.47 0.19 -10.67 16 14 C -0.09 -4.40 9.43 22.22 0.21 -4.20 16 15 C -0.20 -8.76 5.49 -19.87 -0.11 -8.87 16 16 C -0.01 -0.50 4.70 -20.05 -0.09 -0.60 16 17 C -0.10 -3.00 7.90 22.63 0.18 -2.82 16 18 C -0.11 -2.40 9.66 22.18 0.21 -2.19 16 19 C -0.07 -1.57 5.11 -19.24 -0.10 -1.67 16 20 C -0.17 -5.00 5.47 -20.26 -0.11 -5.11 16 21 C -0.11 -3.88 9.27 22.85 0.21 -3.66 16 22 C 0.41 11.82 5.52 28.38 0.16 11.98 16 23 O -0.49 -17.87 17.93 -2.94 -0.05 -17.92 16 24 C -0.16 -2.91 5.79 29.43 0.17 -2.74 16 25 C -0.11 -1.40 5.29 29.59 0.16 -1.25 16 26 C -0.12 -1.35 5.58 30.11 0.17 -1.18 16 27 C -0.08 -1.33 5.42 30.05 0.16 -1.16 16 28 H 0.08 2.22 7.47 -2.39 -0.02 2.20 16 29 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 30 H 0.07 2.03 6.44 -2.39 -0.02 2.01 16 31 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.29 13.95 8.29 -92.71 -0.77 13.18 16 33 H 0.10 5.62 6.17 -2.91 -0.02 5.60 16 34 H 0.09 4.30 8.03 -2.91 -0.02 4.28 16 35 H 0.13 3.61 6.80 -2.91 -0.02 3.59 16 36 H 0.16 2.37 7.98 -2.91 -0.02 2.35 16 37 H 0.10 3.94 8.04 -2.91 -0.02 3.92 16 38 H 0.10 1.74 8.13 -2.38 -0.02 1.72 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.84 7.91 -2.39 -0.02 0.82 16 42 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 43 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.10 1.11 7.92 -2.39 -0.02 1.09 16 45 H 0.06 1.12 7.58 -2.39 -0.02 1.11 16 Total: -1.00 -67.65 363.50 5.84 -61.80 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.99 Total: 29.23 kcal Atomic # 6 Polarization: -72.52 SS G_CDS: 2.64 Total: -69.89 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.24 Total: -43.64 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -67.65 5.84 -61.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245599328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.325 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds