Wall clock time and date at job start Tue Mar 31 2020 12:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38801 * 120.07664 * 2 1 4 4 N 1.39675 * 120.03409 * 0.02562 * 3 2 1 5 5 C 1.46507 * 119.99731 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47018 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00116 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99627 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99274 * 180.02562 * 8 6 5 10 10 H 1.07992 * 120.00887 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99657 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00118 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99882 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47039 * 89.99750 * 13 11 9 15 15 H 1.48497 * 109.47068 * 209.99768 * 13 11 9 16 16 H 1.48497 * 109.47209 * 330.00117 * 13 11 9 17 17 C 1.38941 * 119.92353 * 179.74523 * 3 2 1 18 18 C 1.38170 * 120.06040 * 0.54588 * 17 3 2 19 19 C 1.38139 * 120.14836 * 359.44992 * 18 17 3 20 20 C 1.38713 * 120.06614 * 180.02562 * 2 1 3 21 21 N 1.39943 * 120.03400 * 359.96637 * 20 2 1 22 22 C 1.34777 * 119.99860 * 145.27148 * 21 20 2 23 23 O 1.21584 * 120.00068 * 4.48240 * 22 21 20 24 24 N 1.34773 * 119.99713 * 184.47634 * 22 21 20 25 25 C 1.46502 * 120.00177 * 180.02562 * 24 22 21 26 26 C 1.46505 * 120.00041 * 0.02562 * 24 22 21 27 27 H 1.09001 * 109.47469 * 269.98714 * 1 2 3 28 28 H 1.09005 * 109.46894 * 29.98628 * 1 2 3 29 29 H 1.08992 * 109.47152 * 149.98040 * 1 2 3 30 30 H 0.96993 * 120.00236 * 0.02562 * 4 3 2 31 31 H 1.09006 * 109.46996 * 300.00055 * 5 4 3 32 32 H 1.08995 * 109.46886 * 59.99937 * 5 4 3 33 33 H 0.96995 * 120.00153 * 359.97438 * 8 6 5 34 34 H 0.97003 * 120.00086 * 180.02562 * 12 11 9 35 35 H 1.07998 * 119.96883 * 180.27075 * 17 3 2 36 36 H 1.08002 * 119.92299 * 179.72451 * 18 17 3 37 37 H 1.07993 * 119.96403 * 180.29890 * 19 18 17 38 38 H 0.96999 * 119.99608 * 325.26814 * 21 20 2 39 39 H 1.09002 * 109.46809 * 359.97438 * 25 24 22 40 40 H 1.08993 * 109.47495 * 119.99859 * 25 24 22 41 41 H 1.09002 * 109.46800 * 240.00402 * 25 24 22 42 42 H 1.09000 * 109.46896 * 90.00065 * 26 24 22 43 43 H 1.09001 * 109.46788 * 209.99965 * 26 24 22 44 44 H 1.08994 * 109.46822 * 329.99824 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.2011 0.0000 4 7 1.5066 2.4121 0.0005 5 6 2.2416 3.6794 0.0000 6 6 1.2646 4.8268 0.0014 7 8 0.0716 4.6075 0.0032 8 7 1.7164 6.0966 0.0017 9 6 0.8275 7.1403 0.0034 10 1 -0.2346 6.9452 0.0042 11 6 1.2933 8.4495 0.0043 12 7 0.4413 9.4500 0.0065 13 14 3.1305 8.7872 0.0037 14 1 3.6167 8.8778 -1.3966 15 1 3.3985 10.0687 0.7045 16 1 3.8369 7.6836 0.7024 17 6 3.5920 1.1974 0.0054 18 6 4.2809 -0.0003 -0.0007 19 6 3.5915 -1.1973 -0.0007 20 6 2.2019 -1.2005 -0.0005 21 7 1.5044 -2.4136 -0.0004 22 6 1.9997 -3.4759 -0.6657 23 8 3.0908 -3.4053 -1.1976 24 7 1.2856 -4.6164 -0.7414 25 6 1.8242 -5.7713 -1.4642 26 6 -0.0292 -4.7013 -0.1009 27 1 -0.3634 -0.0002 1.0277 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5141 30 1 0.5367 2.4140 0.0013 31 1 2.8691 3.7359 0.8895 32 1 2.8677 3.7359 -0.8905 33 1 2.6704 6.2719 0.0013 34 1 0.7665 10.3639 0.0067 35 1 4.1340 2.1316 0.0098 36 1 5.3610 -0.0005 -0.0010 37 1 4.1330 -2.1316 -0.0005 38 1 0.6644 -2.4900 0.4787 39 1 2.8045 -5.5211 -1.8699 40 1 1.9180 -6.6158 -0.7815 41 1 1.1508 -6.0360 -2.2794 42 1 -0.7982 -4.3877 -0.8069 43 1 -0.2172 -5.7296 0.2080 44 1 -0.0505 -4.0498 0.7727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256382284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:53 Heat of formation + Delta-G solvation = -15.165768 kcal Electronic energy + Delta-G solvation = -26145.679906 eV Core-core repulsion = 22291.824816 eV Total energy + Delta-G solvation = -3853.855090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99379 -39.41634 -38.44477 -36.13678 -35.55167 -34.39792 -33.89366 -32.17173 -31.76531 -29.28850 -28.30340 -27.33833 -26.52627 -25.96428 -24.27688 -21.94386 -21.37363 -19.99743 -19.57804 -18.81284 -18.38543 -17.66641 -16.60194 -16.32451 -15.92698 -15.54845 -15.19452 -14.96675 -14.85742 -14.42874 -14.31717 -14.23951 -13.64738 -13.59322 -13.20768 -13.17019 -13.00966 -12.97485 -12.63715 -12.61740 -12.38562 -12.30339 -12.14989 -11.90146 -11.42625 -11.27187 -11.08895 -10.66863 -10.54762 -10.19308 -10.07637 -9.71552 -9.58023 -9.11846 -8.76918 -8.31979 -8.07301 -7.12369 -6.41823 -3.94435 1.43728 1.80843 2.25885 2.89173 2.96908 3.01654 3.10312 3.43534 3.55258 3.69803 4.01839 4.02142 4.52307 4.56005 4.81746 4.88356 4.97383 5.06715 5.11714 5.12408 5.17639 5.26420 5.42815 5.48744 5.57276 5.62984 5.65621 5.69788 5.75275 5.77075 5.77371 5.97356 6.12713 6.34647 6.36456 6.47315 6.66172 6.79628 7.08047 7.39904 7.51626 7.57047 7.96852 8.08045 8.23141 8.44535 8.80958 9.28664 9.62978 10.70468 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.002264 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.572140 B =12363.386884 C =13093.645610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.193 4.193 3 C 0.244 3.756 4 N -0.724 5.724 5 C 0.111 3.889 6 C 0.439 3.561 7 O -0.577 6.577 8 N -0.578 5.578 9 C -0.310 4.310 10 H 0.121 0.879 11 C 0.044 3.956 12 N -0.875 5.875 13 Si 0.880 3.120 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.268 1.268 17 C -0.214 4.214 18 C -0.059 4.059 19 C -0.181 4.181 20 C 0.202 3.798 21 N -0.681 5.681 22 C 0.705 3.295 23 O -0.569 6.569 24 N -0.637 5.637 25 C 0.097 3.903 26 C 0.077 3.923 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.411 0.589 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.374 0.626 34 H 0.275 0.725 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.404 0.596 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -27.252 0.991 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.201 4.201 3 C 0.138 3.862 4 N -0.356 5.356 5 C -0.018 4.018 6 C 0.225 3.775 7 O -0.461 6.461 8 N -0.216 5.216 9 C -0.438 4.438 10 H 0.139 0.861 11 C -0.160 4.160 12 N -0.514 5.514 13 Si 0.706 3.294 14 H -0.194 1.194 15 H -0.200 1.200 16 H -0.193 1.193 17 C -0.237 4.237 18 C -0.079 4.079 19 C -0.203 4.203 20 C 0.107 3.893 21 N -0.329 5.329 22 C 0.407 3.593 23 O -0.445 6.445 24 N -0.375 5.375 25 C -0.046 4.046 26 C -0.067 4.067 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.251 0.749 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.207 0.793 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.242 0.758 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.157 -26.965 0.577 27.289 hybrid contribution 0.521 0.490 0.252 0.759 sum 4.679 -26.474 0.828 26.897 Atomic orbital electron populations 1.20511 0.91342 1.02543 1.01792 1.18906 0.95574 0.90418 1.15162 1.17315 0.91072 0.85016 0.92844 1.44525 1.09354 1.01188 1.80535 1.20966 0.94638 0.84095 1.02107 1.19656 0.89318 0.83645 0.84855 1.90539 1.16399 1.83817 1.55375 1.42129 1.08262 1.05520 1.65673 1.19434 0.92402 0.83371 1.48635 0.86148 1.25073 0.98485 0.95225 0.97206 1.69616 1.34243 0.99259 1.48246 0.86660 0.84640 0.79000 0.79091 1.19410 1.19990 1.19297 1.20648 0.91985 0.98744 1.12330 1.20707 0.99256 0.91387 0.96503 1.20925 0.92147 0.99013 1.08221 1.16958 0.90821 0.82642 0.98882 1.42672 1.26689 1.09578 1.53989 1.15829 0.84026 0.80109 0.79384 1.90927 1.20077 1.82116 1.51360 1.46904 1.19675 1.12975 1.57951 1.21595 1.01004 0.86164 0.95796 1.21760 0.84104 1.03374 0.97417 0.91711 0.91281 0.92325 0.74880 0.90479 0.90506 0.79330 0.91392 0.86055 0.86133 0.84920 0.75824 0.89189 0.92334 0.92325 0.92223 0.90404 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.03 36.01 0.33 -0.87 16 2 C -0.19 -2.62 5.91 -104.24 -0.62 -3.24 16 3 C 0.24 3.61 6.63 -83.82 -0.56 3.06 16 4 N -0.72 -11.68 5.60 -59.82 -0.34 -12.01 16 5 C 0.11 1.82 5.39 -5.19 -0.03 1.79 16 6 C 0.44 9.62 7.85 -10.98 -0.09 9.53 16 7 O -0.58 -14.80 15.24 5.55 0.08 -14.71 16 8 N -0.58 -13.30 5.09 -10.96 -0.06 -13.36 16 9 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 10 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 11 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 12 N -0.87 -24.95 13.96 55.50 0.77 -24.17 16 13 Si 0.88 18.81 27.74 -169.99 -4.71 14.09 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 17 C -0.21 -2.94 9.31 -39.35 -0.37 -3.30 16 18 C -0.06 -0.77 10.03 -39.64 -0.40 -1.17 16 19 C -0.18 -2.52 8.69 -39.35 -0.34 -2.87 16 20 C 0.20 2.69 6.28 -83.71 -0.53 2.17 16 21 N -0.68 -7.30 4.62 -14.24 -0.07 -7.36 16 22 C 0.70 8.30 8.13 -86.92 -0.71 7.59 16 23 O -0.57 -8.71 13.08 5.29 0.07 -8.65 16 24 N -0.64 -5.19 3.27 -195.34 -0.64 -5.83 16 25 C 0.10 0.64 10.69 59.85 0.64 1.28 16 26 C 0.08 0.34 10.29 59.85 0.62 0.96 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 29 H 0.06 0.56 7.17 -51.93 -0.37 0.19 16 30 H 0.41 7.05 5.43 -40.82 -0.22 6.83 16 31 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 33 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 34 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.12 1.51 6.72 -52.49 -0.35 1.15 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.13 1.94 6.19 -52.49 -0.33 1.61 16 38 H 0.40 3.16 5.54 -40.82 -0.23 2.93 16 39 H 0.09 0.76 6.90 -51.93 -0.36 0.41 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.20 8.07 -51.93 -0.42 -0.21 16 44 H 0.07 0.24 6.30 -51.93 -0.33 -0.09 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -34.42 360.09 -7.42 -41.84 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -5.67 Total: 17.40 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.29 Total: 7.33 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.32 Total: -62.74 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.42 -7.42 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256382284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.676 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds