Wall clock time and date at job start Tue Mar 31 2020 12:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38801 * 120.07664 * 2 1 4 4 N 1.39675 * 120.03409 * 0.02562 * 3 2 1 5 5 C 1.46507 * 119.99731 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47018 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00116 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99627 * 179.97438 * 6 5 4 9 9 C 1.37095 * 119.99274 * 180.02562 * 8 6 5 10 10 H 1.07992 * 120.00887 * 359.97438 * 9 8 6 11 11 C 1.38955 * 119.99657 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00118 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99882 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47039 * 89.99750 * 13 11 9 15 15 H 1.48497 * 109.47068 * 209.99768 * 13 11 9 16 16 H 1.48497 * 109.47209 * 330.00117 * 13 11 9 17 17 C 1.38941 * 119.92353 * 179.74523 * 3 2 1 18 18 C 1.38170 * 120.06040 * 0.54588 * 17 3 2 19 19 C 1.38139 * 120.14836 * 359.44992 * 18 17 3 20 20 C 1.38713 * 120.06614 * 180.02562 * 2 1 3 21 21 N 1.39943 * 120.03400 * 359.96637 * 20 2 1 22 22 C 1.34777 * 119.99860 * 145.27148 * 21 20 2 23 23 O 1.21584 * 120.00068 * 4.48240 * 22 21 20 24 24 N 1.34773 * 119.99713 * 184.47634 * 22 21 20 25 25 C 1.46502 * 120.00177 * 180.02562 * 24 22 21 26 26 C 1.46505 * 120.00041 * 0.02562 * 24 22 21 27 27 H 1.09001 * 109.47469 * 269.98714 * 1 2 3 28 28 H 1.09005 * 109.46894 * 29.98628 * 1 2 3 29 29 H 1.08992 * 109.47152 * 149.98040 * 1 2 3 30 30 H 0.96993 * 120.00236 * 0.02562 * 4 3 2 31 31 H 1.09006 * 109.46996 * 300.00055 * 5 4 3 32 32 H 1.08995 * 109.46886 * 59.99937 * 5 4 3 33 33 H 0.96995 * 120.00153 * 359.97438 * 8 6 5 34 34 H 0.97003 * 120.00086 * 180.02562 * 12 11 9 35 35 H 1.07998 * 119.96883 * 180.27075 * 17 3 2 36 36 H 1.08002 * 119.92299 * 179.72451 * 18 17 3 37 37 H 1.07993 * 119.96403 * 180.29890 * 19 18 17 38 38 H 0.96999 * 119.99608 * 325.26814 * 21 20 2 39 39 H 1.09002 * 109.46809 * 359.97438 * 25 24 22 40 40 H 1.08993 * 109.47495 * 119.99859 * 25 24 22 41 41 H 1.09002 * 109.46800 * 240.00402 * 25 24 22 42 42 H 1.09000 * 109.46896 * 90.00065 * 26 24 22 43 43 H 1.09001 * 109.46788 * 209.99965 * 26 24 22 44 44 H 1.08994 * 109.46822 * 329.99824 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.2011 0.0000 4 7 1.5066 2.4121 0.0005 5 6 2.2416 3.6794 0.0000 6 6 1.2646 4.8268 0.0014 7 8 0.0716 4.6075 0.0032 8 7 1.7164 6.0966 0.0017 9 6 0.8275 7.1403 0.0034 10 1 -0.2346 6.9452 0.0042 11 6 1.2933 8.4495 0.0043 12 7 0.4413 9.4500 0.0065 13 14 3.1305 8.7872 0.0037 14 1 3.6167 8.8778 -1.3966 15 1 3.3985 10.0687 0.7045 16 1 3.8369 7.6836 0.7024 17 6 3.5920 1.1974 0.0054 18 6 4.2809 -0.0003 -0.0007 19 6 3.5915 -1.1973 -0.0007 20 6 2.2019 -1.2005 -0.0005 21 7 1.5044 -2.4136 -0.0004 22 6 1.9997 -3.4759 -0.6657 23 8 3.0908 -3.4053 -1.1976 24 7 1.2856 -4.6164 -0.7414 25 6 1.8242 -5.7713 -1.4642 26 6 -0.0292 -4.7013 -0.1009 27 1 -0.3634 -0.0002 1.0277 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5141 30 1 0.5367 2.4140 0.0013 31 1 2.8691 3.7359 0.8895 32 1 2.8677 3.7359 -0.8905 33 1 2.6704 6.2719 0.0013 34 1 0.7665 10.3639 0.0067 35 1 4.1340 2.1316 0.0098 36 1 5.3610 -0.0005 -0.0010 37 1 4.1330 -2.1316 -0.0005 38 1 0.6644 -2.4900 0.4787 39 1 2.8045 -5.5211 -1.8699 40 1 1.9180 -6.6158 -0.7815 41 1 1.1508 -6.0360 -2.2794 42 1 -0.7982 -4.3877 -0.8069 43 1 -0.2172 -5.7296 0.2080 44 1 -0.0505 -4.0498 0.7727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256382284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:52 Heat of formation + Delta-G solvation = -40.404175 kcal Electronic energy + Delta-G solvation = -26146.774325 eV Core-core repulsion = 22291.824816 eV Total energy + Delta-G solvation = -3854.949509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88219 -40.69062 -39.92396 -37.07022 -36.50640 -36.07581 -35.14802 -33.84874 -33.12752 -30.36184 -28.91856 -28.50627 -27.57871 -26.77466 -25.95857 -22.96160 -22.40350 -21.37308 -20.90784 -20.42307 -19.37413 -18.78344 -17.78920 -17.34186 -17.05252 -16.79916 -16.44924 -16.41835 -16.12033 -15.50920 -15.42182 -15.17861 -14.96726 -14.68557 -14.47170 -14.22357 -14.12013 -13.99419 -13.95832 -13.48715 -13.38925 -13.24521 -13.02863 -12.93358 -12.86653 -12.44596 -12.39931 -12.09606 -11.99178 -11.59156 -11.54497 -11.17554 -10.64311 -10.61986 -10.31631 -9.76489 -9.01921 -8.45012 -8.24568 -6.07300 0.43838 0.74501 1.31122 1.35125 1.44949 1.51401 1.82447 2.01904 2.21217 2.31619 2.85662 2.99108 3.00340 3.11457 3.99673 4.01239 4.10628 4.17665 4.25103 4.35528 4.41131 4.49954 4.50950 4.61070 4.65584 4.67605 4.74732 4.76070 4.81789 4.85747 4.96448 5.20674 5.32516 5.37354 5.45946 5.48681 5.54239 5.72904 5.85254 5.87655 6.05678 6.38087 6.54128 6.74914 6.79193 6.81930 7.30622 7.39559 7.81791 8.71718 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.002264 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.572140 B =12363.386884 C =13093.645610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.199 4.199 3 C 0.226 3.774 4 N -0.734 5.734 5 C 0.123 3.877 6 C 0.442 3.558 7 O -0.620 6.620 8 N -0.578 5.578 9 C -0.332 4.332 10 H 0.059 0.941 11 C -0.012 4.012 12 N -0.928 5.928 13 Si 0.962 3.038 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.228 1.228 17 C -0.217 4.217 18 C -0.059 4.059 19 C -0.192 4.192 20 C 0.197 3.803 21 N -0.672 5.672 22 C 0.695 3.305 23 O -0.612 6.612 24 N -0.633 5.633 25 C 0.094 3.906 26 C 0.069 3.931 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.404 0.596 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.393 0.607 34 H 0.281 0.719 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.418 0.582 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -29.041 1.391 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.206 4.206 3 C 0.122 3.878 4 N -0.367 5.367 5 C -0.005 4.005 6 C 0.230 3.770 7 O -0.506 6.506 8 N -0.219 5.219 9 C -0.461 4.461 10 H 0.077 0.923 11 C -0.211 4.211 12 N -0.568 5.568 13 Si 0.782 3.218 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.151 1.151 17 C -0.240 4.240 18 C -0.079 4.079 19 C -0.215 4.215 20 C 0.101 3.899 21 N -0.321 5.321 22 C 0.397 3.603 23 O -0.491 6.491 24 N -0.370 5.370 25 C -0.049 4.049 26 C -0.073 4.073 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.242 0.758 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.229 0.771 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.258 0.742 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.382 -28.829 0.995 29.544 hybrid contribution -0.333 0.872 0.119 0.941 sum 6.049 -27.957 1.114 28.625 Atomic orbital electron populations 1.20518 0.90172 1.02594 1.02600 1.19106 0.96577 0.90224 1.14723 1.17519 0.91684 0.84732 0.93895 1.44509 1.08984 1.01491 1.81675 1.20957 0.93091 0.81633 1.04774 1.20744 0.89736 0.84552 0.81955 1.90525 1.19041 1.84698 1.56368 1.41918 1.08545 1.04922 1.66497 1.19004 0.90752 0.85551 1.50804 0.92331 1.26136 1.05204 0.94082 0.95722 1.69790 1.37567 1.00045 1.49420 0.85398 0.76476 0.79864 0.80060 1.18111 1.19996 1.15084 1.20865 0.91589 0.99666 1.11927 1.20963 1.00478 0.90785 0.95639 1.21029 0.92665 0.99106 1.08680 1.17048 0.90912 0.83464 0.98497 1.42543 1.26978 1.08704 1.53915 1.16088 0.83896 0.81018 0.79276 1.90893 1.22072 1.83018 1.53142 1.47067 1.20504 1.11999 1.57435 1.21729 1.00160 0.86149 0.96837 1.22038 0.82227 1.05279 0.97730 0.90502 0.92802 0.90617 0.75797 0.87498 0.87732 0.77086 0.90973 0.84346 0.83866 0.85944 0.74223 0.91654 0.90035 0.90551 0.91325 0.88015 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.03 71.24 0.64 -1.57 16 2 C -0.20 -5.17 5.91 -19.62 -0.12 -5.29 16 3 C 0.23 6.34 6.63 38.19 0.25 6.59 16 4 N -0.73 -22.70 5.60 -343.18 -1.92 -24.62 16 5 C 0.12 3.74 5.39 85.63 0.46 4.20 16 6 C 0.44 19.18 7.85 87.66 0.69 19.87 16 7 O -0.62 -32.78 15.24 -3.07 -0.05 -32.82 16 8 N -0.58 -26.22 5.09 -306.98 -1.56 -27.78 16 9 C -0.33 -18.90 10.16 84.04 0.85 -18.04 16 10 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 12 N -0.93 -54.75 13.96 21.66 0.30 -54.45 16 13 Si 0.96 37.49 27.74 68.60 1.90 39.40 16 14 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 15 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 16 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 17 C -0.22 -5.43 9.31 22.42 0.21 -5.22 16 18 C -0.06 -1.43 10.03 22.23 0.22 -1.21 16 19 C -0.19 -5.21 8.69 22.42 0.19 -5.01 16 20 C 0.20 5.04 6.28 38.13 0.24 5.28 16 21 N -0.67 -13.60 4.62 -317.24 -1.47 -15.06 16 22 C 0.70 15.85 8.13 179.06 1.45 17.31 16 23 O -0.61 -18.90 13.08 -3.98 -0.05 -18.95 16 24 N -0.63 -9.26 3.27 -890.18 -2.91 -12.18 16 25 C 0.09 1.08 10.69 127.77 1.37 2.45 16 26 C 0.07 0.43 10.29 127.77 1.31 1.74 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.35 6.55 -2.38 -0.02 1.33 16 29 H 0.08 1.34 7.17 -2.39 -0.02 1.32 16 30 H 0.40 13.81 5.43 -92.71 -0.50 13.31 16 31 H 0.11 2.67 7.94 -2.38 -0.02 2.65 16 32 H 0.10 2.65 7.96 -2.39 -0.02 2.63 16 33 H 0.39 14.55 5.76 -92.71 -0.53 14.02 16 34 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.14 2.90 6.72 -2.91 -0.02 2.88 16 36 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.12 3.58 6.19 -2.91 -0.02 3.56 16 38 H 0.42 5.77 5.54 -92.71 -0.51 5.26 16 39 H 0.06 1.11 6.90 -2.39 -0.02 1.09 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.10 0.18 8.07 -2.39 -0.02 0.16 16 44 H 0.07 0.34 6.30 -2.39 -0.02 0.32 16 Total: -1.00 -80.59 360.09 1.95 -78.64 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -0.54 Total: 46.91 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 8.25 Total: 20.92 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -7.56 Total: -134.09 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.10 Total: -51.77 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.90 Total: 39.40 kcal Total: -80.59 1.95 -78.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256382284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.239 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds