Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30842 * 125.89457 * 2 1 4 4 N 1.40081 * 108.20198 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03583 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92752 * 359.75991 * 4 3 2 7 7 C 1.35314 * 107.74562 * 0.38500 * 6 4 3 8 8 C 1.50704 * 126.04139 * 179.86937 * 7 6 4 9 9 N 1.46499 * 109.47090 * 259.69282 * 8 7 6 10 10 C 1.34775 * 119.99505 * 179.97438 * 9 8 7 11 11 O 1.21352 * 120.00141 * 359.97438 * 10 9 8 12 12 C 1.49448 * 119.99800 * 180.02562 * 10 9 8 13 13 O 1.21344 * 120.00308 * 353.23338 * 12 10 9 14 14 N 1.34784 * 120.00133 * 173.23049 * 12 10 9 15 15 C 1.46929 * 120.62828 * 351.35143 * 14 12 10 16 16 C 1.53191 * 108.89438 * 233.55930 * 15 14 12 17 17 C 1.53070 * 109.29330 * 305.58156 * 16 15 14 18 18 C 1.53040 * 109.66092 * 61.15257 * 17 16 15 19 19 H 1.09000 * 109.49788 * 58.65045 * 18 17 16 20 20 C 1.50699 * 109.49627 * 178.74544 * 18 17 16 21 21 H 1.07993 * 120.00318 * 359.84311 * 20 18 17 22 22 C 1.37881 * 120.00047 * 179.83697 * 20 18 17 23 23 N 1.31523 * 119.99840 * 0.02562 * 22 20 18 24 24 Si 1.86793 * 120.00310 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47250 * 60.00246 * 24 22 20 26 26 H 1.48503 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46979 * 299.99914 * 24 22 20 28 28 C 1.46924 * 120.63092 * 171.37996 * 14 12 10 29 29 H 1.09009 * 109.46973 * 269.97326 * 1 2 3 30 30 H 1.08995 * 109.47467 * 29.97646 * 1 2 3 31 31 H 1.09000 * 109.47017 * 149.97612 * 1 2 3 32 32 H 1.08005 * 126.12890 * 180.23425 * 6 4 3 33 33 H 1.08995 * 109.46665 * 139.69428 * 8 7 6 34 34 H 1.09002 * 109.46302 * 19.69258 * 8 7 6 35 35 H 0.96995 * 120.00359 * 0.02562 * 9 8 7 36 36 H 1.09001 * 109.58364 * 353.42154 * 15 14 12 37 37 H 1.08998 * 109.58185 * 113.69820 * 15 14 12 38 38 H 1.09001 * 109.49476 * 65.38778 * 16 15 14 39 39 H 1.08999 * 109.49901 * 185.48778 * 16 15 14 40 40 H 1.09002 * 109.35068 * 301.12365 * 17 16 15 41 41 H 1.09002 * 109.44049 * 181.23616 * 17 16 15 42 42 H 0.96998 * 120.00395 * 179.97438 * 23 22 20 43 43 H 1.09006 * 109.57806 * 246.15416 * 28 14 12 44 44 H 1.09000 * 109.58866 * 6.43300 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 1 4.3907 1.2081 -0.0004 6 6 3.6142 -0.7152 0.0044 7 6 2.3272 -1.1330 -0.0006 8 6 1.8600 -2.5657 -0.0004 9 7 1.4796 -2.9555 -1.3604 10 6 1.0285 -4.2022 -1.6028 11 8 0.9378 -5.0019 -0.6946 12 6 0.6410 -4.6000 -2.9902 13 8 0.6148 -3.7696 -3.8746 14 7 0.3206 -5.8813 -3.2593 15 6 0.5274 -6.9317 -2.2531 16 6 1.3632 -8.0556 -2.8738 17 6 0.6873 -8.5373 -4.1599 18 6 0.6044 -7.3830 -5.1614 19 1 1.6074 -7.0128 -5.3737 20 6 -0.0335 -7.8691 -6.4373 21 1 -0.3463 -8.8989 -6.5265 22 6 -0.2181 -6.9989 -7.4908 23 7 0.1631 -5.7448 -7.3824 24 14 -1.0095 -7.6011 -9.0720 25 1 -2.3751 -8.1065 -8.7808 26 1 -1.0926 -6.4799 -10.0423 27 1 -0.1894 -8.6957 -9.6503 28 6 -0.2416 -6.2541 -4.5646 29 1 -0.3633 -0.0005 1.0278 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4892 -1.3484 0.0089 33 1 0.9994 -2.6671 0.6607 34 1 2.6658 -3.2105 0.3504 35 1 1.5531 -2.3166 -2.0865 36 1 1.0542 -6.5162 -1.3940 37 1 -0.4370 -7.3270 -1.9340 38 1 2.3600 -7.6812 -3.1071 39 1 1.4406 -8.8833 -2.1688 40 1 -0.3177 -8.8908 -3.9292 41 1 1.2685 -9.3519 -4.5920 42 1 0.0337 -5.1327 -8.1236 43 1 -1.2686 -6.5959 -4.4358 44 1 -0.2245 -5.3908 -5.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261686763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = 10.305671 kcal Electronic energy + Delta-G solvation = -26983.764670 eV Core-core repulsion = 23131.014105 eV Total energy + Delta-G solvation = -3852.750566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63885 -40.34931 -38.24540 -36.79763 -35.24172 -33.28676 -33.03807 -31.72202 -30.98268 -29.73476 -28.21930 -26.81702 -25.23649 -24.86204 -22.36400 -21.77195 -21.38149 -20.15161 -19.80643 -18.89743 -18.11772 -17.06113 -16.59216 -16.14335 -15.68432 -15.44614 -14.93013 -14.72544 -14.50037 -14.48611 -14.02382 -13.70941 -13.29734 -13.20968 -13.05682 -13.03524 -12.84102 -12.58633 -12.47297 -12.29106 -12.10691 -11.77576 -11.35906 -10.94810 -10.88483 -10.70276 -10.44213 -10.27668 -10.09485 -9.85287 -9.69703 -9.29110 -9.17073 -9.08883 -8.99491 -8.50176 -8.42075 -7.78240 -5.99497 -4.08252 1.50185 1.86509 2.18537 2.52506 3.00339 3.32747 3.38272 3.39854 3.69132 4.09502 4.31066 4.43334 4.44264 4.75908 4.88461 4.97939 5.12676 5.30254 5.40234 5.50003 5.62607 5.64038 5.68985 5.69205 5.77040 5.89078 6.14518 6.27216 6.29639 6.39425 6.56757 6.63453 6.74308 6.87658 6.90202 7.00737 7.07008 7.21453 7.31984 7.34546 7.61595 7.85251 7.97221 8.02366 8.20826 8.37928 8.62937 8.95549 9.57148 11.05628 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002899 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.309144 B = 9656.621724 C =10540.609178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.097 3.903 3 N -0.296 5.296 4 N -0.476 5.476 5 H 0.441 0.559 6 C 0.086 3.914 7 C -0.261 4.261 8 C 0.199 3.801 9 N -0.701 5.701 10 C 0.509 3.491 11 O -0.520 6.520 12 C 0.493 3.507 13 O -0.521 6.521 14 N -0.570 5.570 15 C 0.072 3.928 16 C -0.133 4.133 17 C -0.113 4.113 18 C 0.042 3.958 19 H 0.029 0.971 20 C -0.520 4.520 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.108 3.892 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.126 0.874 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.775 9.125 17.399 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 N -0.119 5.119 4 N -0.182 5.182 5 H 0.285 0.715 6 C -0.063 4.063 7 C -0.273 4.273 8 C 0.075 3.925 9 N -0.354 5.354 10 C 0.291 3.709 11 O -0.398 6.398 12 C 0.274 3.726 13 O -0.398 6.398 14 N -0.302 5.302 15 C -0.050 4.050 16 C -0.172 4.172 17 C -0.150 4.150 18 C 0.022 3.978 19 H 0.048 0.952 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.518 5.518 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.011 4.011 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.719 10.439 17.461 21.132 hybrid contribution 0.158 -0.652 -1.255 1.423 sum 5.877 9.787 16.206 19.822 Atomic orbital electron populations 1.20273 0.86361 1.03990 1.03257 1.22344 0.97197 0.89950 0.97570 1.77354 0.86589 1.22425 1.25562 1.46249 1.07523 1.05466 1.59011 0.71465 1.22512 0.99310 0.85417 0.99054 1.19963 0.92214 0.95790 1.19356 1.19467 1.00340 0.89327 0.83335 1.46017 1.64686 1.13340 1.11394 1.20739 0.77526 0.82346 0.90242 1.90469 1.53515 1.49201 1.46598 1.19854 0.80659 0.84231 0.87866 1.90776 1.52241 1.50307 1.46464 1.48426 1.59122 1.05334 1.17328 1.22672 1.00838 0.88942 0.92575 1.21964 0.99392 0.97470 0.98339 1.21662 0.99072 0.99618 0.94687 1.18944 0.96377 0.90158 0.92275 0.95244 1.21054 1.40894 0.96334 0.97615 0.92340 1.25061 0.95372 0.94971 0.98650 1.69877 1.46277 1.03607 1.32086 0.86640 0.79884 0.78249 0.83126 1.20239 1.21266 1.20299 1.22466 0.95398 1.03257 0.80024 0.90196 0.90546 0.89959 0.80233 0.90271 0.90496 0.75064 0.85659 0.92243 0.92488 0.92124 0.93196 0.93107 0.92603 0.93390 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.26 36.01 0.37 -0.31 16 2 C 0.10 1.00 7.22 -82.40 -0.59 0.40 16 3 N -0.30 -3.21 12.70 33.67 0.43 -2.78 16 4 N -0.48 -3.66 7.36 30.45 0.22 -3.44 16 5 H 0.44 1.95 8.96 -182.61 -1.64 0.31 16 6 C 0.09 0.63 11.90 -17.22 -0.20 0.43 16 7 C -0.26 -2.42 5.47 -105.05 -0.57 -3.00 16 8 C 0.20 1.96 5.78 -5.19 -0.03 1.93 16 9 N -0.70 -8.89 5.54 -61.91 -0.34 -9.23 16 10 C 0.51 8.16 7.74 -11.59 -0.09 8.07 16 11 O -0.52 -8.58 13.18 5.50 0.07 -8.51 16 12 C 0.49 9.88 7.73 -11.58 -0.09 9.79 16 13 O -0.52 -11.94 15.93 5.50 0.09 -11.85 16 14 N -0.57 -11.84 2.97 -173.28 -0.52 -12.35 16 15 C 0.07 1.27 5.98 -3.71 -0.02 1.25 16 16 C -0.13 -2.32 6.09 -26.60 -0.16 -2.49 16 17 C -0.11 -2.31 5.10 -26.67 -0.14 -2.44 16 18 C 0.04 1.03 2.26 -91.66 -0.21 0.83 16 19 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.71 5.30 -17.81 -0.09 1.62 16 23 N -0.88 -25.41 11.39 55.43 0.63 -24.78 16 24 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.11 2.63 5.41 -3.72 -0.02 2.61 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 32 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.41 5.35 7.95 -40.82 -0.32 5.02 16 36 H 0.13 2.13 4.31 -54.78 -0.24 1.89 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.12 3.43 5.13 -51.93 -0.27 3.16 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -32.91 362.72 -8.61 -41.52 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.49 Total: 5.50 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.15 Total: 4.31 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.42 Total: -52.59 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.16 Total: -20.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.91 -8.61 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261686763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.828 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds