Wall clock time and date at job start Tue Mar 31 2020 13:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30842 * 125.89457 * 2 1 4 4 N 1.40081 * 108.20198 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03583 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92752 * 359.75991 * 4 3 2 7 7 C 1.35314 * 107.74562 * 0.38500 * 6 4 3 8 8 C 1.50704 * 126.04139 * 179.86937 * 7 6 4 9 9 N 1.46499 * 109.47090 * 259.69282 * 8 7 6 10 10 C 1.34775 * 119.99505 * 179.97438 * 9 8 7 11 11 O 1.21352 * 120.00141 * 359.97438 * 10 9 8 12 12 C 1.49448 * 119.99800 * 180.02562 * 10 9 8 13 13 O 1.21344 * 120.00308 * 353.23338 * 12 10 9 14 14 N 1.34784 * 120.00133 * 173.23049 * 12 10 9 15 15 C 1.46929 * 120.62828 * 351.35143 * 14 12 10 16 16 C 1.53191 * 108.89438 * 233.55930 * 15 14 12 17 17 C 1.53070 * 109.29330 * 305.58156 * 16 15 14 18 18 C 1.53040 * 109.66092 * 61.15257 * 17 16 15 19 19 H 1.09000 * 109.49788 * 58.65045 * 18 17 16 20 20 C 1.50699 * 109.49627 * 178.74544 * 18 17 16 21 21 H 1.07993 * 120.00318 * 359.84311 * 20 18 17 22 22 C 1.37881 * 120.00047 * 179.83697 * 20 18 17 23 23 N 1.31523 * 119.99840 * 0.02562 * 22 20 18 24 24 Si 1.86793 * 120.00310 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47250 * 60.00246 * 24 22 20 26 26 H 1.48503 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46979 * 299.99914 * 24 22 20 28 28 C 1.46924 * 120.63092 * 171.37996 * 14 12 10 29 29 H 1.09009 * 109.46973 * 269.97326 * 1 2 3 30 30 H 1.08995 * 109.47467 * 29.97646 * 1 2 3 31 31 H 1.09000 * 109.47017 * 149.97612 * 1 2 3 32 32 H 1.08005 * 126.12890 * 180.23425 * 6 4 3 33 33 H 1.08995 * 109.46665 * 139.69428 * 8 7 6 34 34 H 1.09002 * 109.46302 * 19.69258 * 8 7 6 35 35 H 0.96995 * 120.00359 * 0.02562 * 9 8 7 36 36 H 1.09001 * 109.58364 * 353.42154 * 15 14 12 37 37 H 1.08998 * 109.58185 * 113.69820 * 15 14 12 38 38 H 1.09001 * 109.49476 * 65.38778 * 16 15 14 39 39 H 1.08999 * 109.49901 * 185.48778 * 16 15 14 40 40 H 1.09002 * 109.35068 * 301.12365 * 17 16 15 41 41 H 1.09002 * 109.44049 * 181.23616 * 17 16 15 42 42 H 0.96998 * 120.00395 * 179.97438 * 23 22 20 43 43 H 1.09006 * 109.57806 * 246.15416 * 28 14 12 44 44 H 1.09000 * 109.58866 * 6.43300 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 1 4.3907 1.2081 -0.0004 6 6 3.6142 -0.7152 0.0044 7 6 2.3272 -1.1330 -0.0006 8 6 1.8600 -2.5657 -0.0004 9 7 1.4796 -2.9555 -1.3604 10 6 1.0285 -4.2022 -1.6028 11 8 0.9378 -5.0019 -0.6946 12 6 0.6410 -4.6000 -2.9902 13 8 0.6148 -3.7696 -3.8746 14 7 0.3206 -5.8813 -3.2593 15 6 0.5274 -6.9317 -2.2531 16 6 1.3632 -8.0556 -2.8738 17 6 0.6873 -8.5373 -4.1599 18 6 0.6044 -7.3830 -5.1614 19 1 1.6074 -7.0128 -5.3737 20 6 -0.0335 -7.8691 -6.4373 21 1 -0.3463 -8.8989 -6.5265 22 6 -0.2181 -6.9989 -7.4908 23 7 0.1631 -5.7448 -7.3824 24 14 -1.0095 -7.6011 -9.0720 25 1 -2.3751 -8.1065 -8.7808 26 1 -1.0926 -6.4799 -10.0423 27 1 -0.1894 -8.6957 -9.6503 28 6 -0.2416 -6.2541 -4.5646 29 1 -0.3633 -0.0005 1.0278 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.4892 -1.3484 0.0089 33 1 0.9994 -2.6671 0.6607 34 1 2.6658 -3.2105 0.3504 35 1 1.5531 -2.3166 -2.0865 36 1 1.0542 -6.5162 -1.3940 37 1 -0.4370 -7.3270 -1.9340 38 1 2.3600 -7.6812 -3.1071 39 1 1.4406 -8.8833 -2.1688 40 1 -0.3177 -8.8908 -3.9292 41 1 1.2685 -9.3519 -4.5920 42 1 0.0337 -5.1327 -8.1236 43 1 -1.2686 -6.5959 -4.4358 44 1 -0.2245 -5.3908 -5.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261686763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:57 Heat of formation + Delta-G solvation = -13.506661 kcal Electronic energy + Delta-G solvation = -26984.797251 eV Core-core repulsion = 23131.014105 eV Total energy + Delta-G solvation = -3853.783146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33757 -41.75243 -39.70164 -38.45615 -36.34288 -35.12578 -33.80808 -33.41108 -31.81856 -31.54744 -28.91151 -28.03137 -26.99887 -26.30073 -23.80547 -23.42441 -22.08016 -21.51977 -20.73228 -20.28717 -19.05829 -18.54070 -18.10938 -17.79930 -17.00860 -16.79961 -16.41745 -15.92082 -15.68207 -15.56075 -15.36680 -15.01072 -14.76014 -14.61482 -14.39659 -14.14048 -13.87851 -13.79114 -13.67631 -13.45232 -13.29692 -13.00134 -12.91556 -12.82489 -12.50425 -12.25793 -12.12255 -11.70442 -11.59750 -11.58649 -11.12117 -10.95379 -10.51982 -10.37999 -10.32891 -10.05159 -9.61360 -9.48310 -8.09284 -6.26217 0.45016 0.86051 1.27472 1.43397 1.44689 1.52735 1.82502 1.99253 2.22662 2.43434 2.75693 3.18662 3.44083 3.62938 3.87570 4.14190 4.17696 4.22075 4.37383 4.38279 4.48302 4.62951 4.71451 4.76602 4.77315 4.85197 4.90357 4.95882 5.02902 5.07117 5.09925 5.20572 5.26772 5.31287 5.40522 5.54050 5.59700 5.61696 5.87872 5.97100 6.09680 6.33138 6.40584 6.50005 6.67054 6.79850 6.86751 7.06608 7.43485 8.93969 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002899 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.309144 B = 9656.621724 C =10540.609178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.085 3.915 3 N -0.333 5.333 4 N -0.468 5.468 5 H 0.454 0.546 6 C 0.104 3.896 7 C -0.282 4.282 8 C 0.203 3.797 9 N -0.683 5.683 10 C 0.521 3.479 11 O -0.522 6.522 12 C 0.483 3.517 13 O -0.560 6.560 14 N -0.577 5.577 15 C 0.072 3.928 16 C -0.126 4.126 17 C -0.107 4.107 18 C 0.040 3.960 19 H -0.011 1.011 20 C -0.537 4.537 21 H 0.062 0.938 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 0.958 3.042 25 H -0.268 1.268 26 H -0.288 1.288 27 H -0.270 1.270 28 C 0.121 3.879 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.218 0.782 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.412 0.588 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.261 0.739 43 H 0.044 0.956 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 8.187 19.231 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 N -0.157 5.157 4 N -0.176 5.176 5 H 0.301 0.699 6 C -0.046 4.046 7 C -0.294 4.294 8 C 0.081 3.919 9 N -0.335 5.335 10 C 0.302 3.698 11 O -0.401 6.401 12 C 0.266 3.734 13 O -0.439 6.439 14 N -0.309 5.309 15 C -0.049 4.049 16 C -0.164 4.164 17 C -0.145 4.145 18 C 0.021 3.979 19 H 0.007 0.993 20 C -0.575 4.575 21 H 0.080 0.920 22 C -0.188 4.188 23 N -0.552 5.552 24 Si 0.783 3.217 25 H -0.193 1.193 26 H -0.214 1.214 27 H -0.195 1.195 28 C -0.001 4.001 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.469 9.514 19.340 22.504 hybrid contribution 0.001 -0.288 -1.794 1.817 sum 6.470 9.226 17.546 20.853 Atomic orbital electron populations 1.20295 0.85936 1.03594 1.04026 1.22619 0.97854 0.90353 0.97416 1.77297 0.88009 1.23316 1.27073 1.46306 1.07163 1.06061 1.58079 0.69865 1.23074 0.99849 0.85386 0.96288 1.19963 0.92976 0.95109 1.21390 1.19621 1.01041 0.90043 0.81220 1.46057 1.62826 1.11783 1.12821 1.19806 0.78476 0.83545 0.87948 1.90452 1.54353 1.49572 1.45694 1.20655 0.79626 0.83538 0.89556 1.90750 1.53665 1.51246 1.48249 1.48456 1.59051 1.06692 1.16700 1.22912 1.01791 0.88218 0.91966 1.21936 0.98358 0.98583 0.97479 1.21559 1.00015 0.97813 0.95092 1.18881 0.93886 0.91946 0.93223 0.99263 1.21466 1.40678 0.96525 0.98841 0.91971 1.25877 0.95933 0.94999 1.02009 1.70063 1.47591 1.04770 1.32751 0.85613 0.79279 0.77712 0.79075 1.19274 1.21370 1.19475 1.21920 0.95279 1.01407 0.81468 0.88842 0.90764 0.90471 0.76587 0.89887 0.88825 0.75179 0.84205 0.90994 0.93248 0.88074 0.92489 0.92815 0.93028 0.93814 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.26 71.24 0.73 -0.60 16 2 C 0.08 1.66 7.22 43.10 0.31 1.97 16 3 N -0.33 -6.92 12.70 -47.38 -0.60 -7.53 16 4 N -0.47 -6.30 7.36 -57.59 -0.42 -6.72 16 5 H 0.45 3.11 8.96 -213.33 -1.91 1.19 16 6 C 0.10 1.23 11.90 83.54 0.99 2.23 16 7 C -0.28 -4.67 5.47 -20.14 -0.11 -4.78 16 8 C 0.20 3.53 5.78 85.63 0.50 4.03 16 9 N -0.68 -16.42 5.54 -468.14 -2.59 -19.01 16 10 C 0.52 16.11 7.74 87.27 0.68 16.78 16 11 O -0.52 -16.01 13.18 -3.25 -0.04 -16.06 16 12 C 0.48 19.65 7.73 87.27 0.67 20.32 16 13 O -0.56 -26.71 15.93 -3.23 -0.05 -26.76 16 14 N -0.58 -24.16 2.97 -820.49 -2.44 -26.61 16 15 C 0.07 2.41 5.98 86.36 0.52 2.92 16 16 C -0.13 -4.10 6.09 30.68 0.19 -3.91 16 17 C -0.11 -4.28 5.10 30.63 0.16 -4.13 16 18 C 0.04 2.03 2.26 -11.47 -0.03 2.00 16 19 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 20 C -0.54 -29.54 8.56 25.60 0.22 -29.32 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.01 0.64 5.30 84.65 0.45 1.09 16 23 N -0.91 -54.76 11.39 21.45 0.24 -54.51 16 24 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.12 6.07 5.41 86.36 0.47 6.53 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 32 H 0.22 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 10.44 7.95 -92.71 -0.74 9.70 16 36 H 0.14 4.38 4.31 -47.53 -0.21 4.17 16 37 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.08 4.93 5.13 -2.39 -0.01 4.92 16 Total: -1.00 -73.91 362.72 0.06 -73.85 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -1.80 Total: 22.23 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.74 Total: 15.13 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -5.81 Total: -114.38 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -0.09 Total: -42.81 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.91 0.06 -73.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261686763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.342 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds