Wall clock time and date at job start Tue Mar 31 2020 12:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46983 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00364 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00027 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.28746 * 35.67472 * 15 14 12 17 17 C 1.54256 * 110.32228 * 273.54572 * 15 14 12 18 18 C 1.54382 * 105.06062 * 241.10586 * 17 15 14 19 19 N 1.48558 * 104.59501 * 23.85253 * 18 17 15 20 20 C 1.38605 * 110.99812 * 200.96198 * 19 18 17 21 21 C 1.39278 * 120.49522 * 59.87564 * 20 19 18 22 22 C 1.38881 * 118.28093 * 179.97438 * 21 20 19 23 23 O 1.35548 * 120.46149 * 180.02562 * 22 21 20 24 24 N 1.33034 * 119.07376 * 0.02562 * 22 21 20 25 25 C 1.31737 * 120.91152 * 359.97438 * 24 22 21 26 26 N 1.31750 * 121.89437 * 359.74408 * 25 24 22 27 27 C 1.48564 * 104.22083 * 320.51962 * 19 18 17 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 32 32 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 33 33 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 34 34 H 1.08997 * 109.47600 * 59.99950 * 11 10 9 35 35 H 0.97005 * 120.00166 * 0.02562 * 14 12 11 36 36 H 1.09002 * 110.32584 * 0.02562 * 17 15 14 37 37 H 1.08997 * 110.32359 * 122.20607 * 17 15 14 38 38 H 1.09000 * 110.41174 * 142.63665 * 18 17 15 39 39 H 1.08997 * 110.40749 * 265.07361 * 18 17 15 40 40 H 1.07994 * 120.85864 * 359.95587 * 21 20 19 41 41 H 0.96698 * 113.99895 * 90.00514 * 23 22 21 42 42 H 1.08000 * 119.05456 * 180.02562 * 25 24 22 43 43 H 1.09002 * 110.40863 * 280.70107 * 27 19 18 44 44 H 1.09005 * 110.40908 * 158.26554 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 6 1.4800 -4.9871 -0.0247 12 6 2.4593 -6.1325 -0.0301 13 8 3.6517 -5.9111 -0.0276 14 7 2.0100 -7.4032 -0.0366 15 6 2.9620 -8.5168 -0.0412 16 1 3.8383 -8.2673 0.5570 17 6 3.3792 -8.8589 -1.4863 18 6 2.9246 -10.3187 -1.7002 19 7 1.8270 -10.5165 -0.7188 20 6 1.6325 -11.8635 -0.4561 21 6 2.6632 -12.6365 0.0729 22 6 2.4177 -13.9812 0.3188 23 8 3.3890 -14.7741 0.8336 24 7 1.2159 -14.4800 0.0419 25 6 0.2653 -13.7173 -0.4581 26 7 0.4560 -12.4364 -0.7006 27 6 2.2903 -9.7985 0.4965 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.8725 -3.6002 -0.9065 32 1 2.8711 -3.6087 0.8735 33 1 0.8524 -5.0492 0.8642 34 1 0.8543 -5.0404 -0.9157 35 1 1.0562 -7.5804 -0.0382 36 1 2.8761 -8.1980 -2.1922 37 1 4.4606 -8.7790 -1.5970 38 1 2.5555 -10.4568 -2.7164 39 1 3.7454 -11.0062 -1.4962 40 1 3.6284 -12.2016 0.2862 41 1 3.4000 -14.8055 1.8000 42 1 -0.6994 -14.1535 -0.6712 43 1 3.0118 -10.4048 1.0443 44 1 1.4434 -9.5452 1.1344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001304646160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:50 Heat of formation + Delta-G solvation = -18.374567 kcal Electronic energy + Delta-G solvation = -25644.000472 eV Core-core repulsion = 21790.006238 eV Total energy + Delta-G solvation = -3853.994234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96191 -40.19029 -38.90440 -38.04779 -35.05789 -34.13808 -33.22574 -32.17680 -31.83425 -30.05126 -29.19541 -27.54061 -25.23030 -24.27066 -23.78968 -22.06844 -21.44337 -20.47890 -19.76596 -19.54924 -18.57602 -17.50728 -16.81839 -16.63793 -16.18807 -16.13007 -15.94428 -15.43056 -15.25556 -14.93101 -14.50065 -14.41054 -13.92644 -13.65085 -13.25500 -13.08061 -12.91118 -12.77755 -12.32931 -12.24214 -11.92776 -11.72417 -11.40547 -11.32459 -11.27527 -10.84023 -10.77312 -10.60568 -10.54003 -10.16901 -10.08491 -9.70160 -9.66238 -9.30994 -9.25282 -9.04613 -9.00519 -8.30366 -5.96173 -3.97590 0.19085 0.30226 2.68356 2.73750 2.88979 3.07532 3.21153 3.37276 3.40817 3.44528 3.73272 3.88137 4.12239 4.27503 4.36049 4.50240 4.60404 4.63572 4.74699 4.79953 4.83823 5.06723 5.12146 5.29249 5.35698 5.39707 5.42730 5.51811 5.73515 5.74185 5.77950 5.98804 6.17485 6.28498 6.48354 6.51010 6.74197 6.76229 6.94600 7.17737 7.53012 7.59219 7.72483 7.85600 8.04509 8.43450 8.48536 9.09276 9.66110 11.15223 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.001806 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.794288 B =15500.095548 C =15843.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.515 3.485 13 O -0.538 6.538 14 N -0.730 5.730 15 C 0.146 3.854 16 H 0.101 0.899 17 C -0.134 4.134 18 C 0.042 3.958 19 N -0.471 5.471 20 C 0.368 3.632 21 C -0.275 4.275 22 C 0.371 3.629 23 O -0.477 6.477 24 N -0.546 5.546 25 C 0.335 3.665 26 N -0.505 5.505 27 C 0.032 3.968 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.153 0.847 41 H 0.410 0.590 42 H 0.208 0.792 43 H 0.067 0.933 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -31.195 1.257 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.414 6.414 14 N -0.384 5.384 15 C 0.040 3.960 16 H 0.119 0.881 17 C -0.173 4.173 18 C -0.084 4.084 19 N -0.194 5.194 20 C 0.130 3.870 21 C -0.302 4.302 22 C 0.184 3.816 23 O -0.285 6.285 24 N -0.272 5.272 25 C 0.046 3.954 26 N -0.222 5.222 27 C -0.095 4.095 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.239 0.761 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.170 0.830 41 H 0.270 0.730 42 H 0.224 0.776 43 H 0.085 0.915 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.633 -31.202 0.333 31.315 hybrid contribution 1.361 0.684 0.922 1.781 sum 3.994 -30.518 1.255 30.803 Atomic orbital electron populations 1.69954 1.06017 1.26629 1.51090 1.25025 0.94865 0.99234 0.95418 0.86651 0.79564 0.83096 0.78650 1.21344 1.20264 1.20248 1.21235 0.93130 0.91039 1.50272 0.92654 1.19132 0.93978 0.91451 0.97138 1.21442 0.98617 0.91581 1.01616 1.21848 0.98147 0.94006 1.03856 1.21300 0.90397 0.83702 0.74301 1.90673 1.17322 1.84727 1.48698 1.46210 1.09962 1.05169 1.77076 1.21513 0.92991 0.85252 0.96244 0.88067 1.22830 1.02201 0.94745 0.97559 1.23331 0.90834 0.97585 0.96693 1.62302 1.41994 1.05321 1.09809 1.20062 0.88005 0.90555 0.88414 1.23477 1.03456 0.95112 1.08118 1.19297 0.85617 0.85985 0.90694 1.84732 1.48124 1.68338 1.27288 1.68022 1.01442 1.41457 1.16238 1.24906 0.97415 0.84632 0.88473 1.68185 1.23110 1.13003 1.17855 1.23610 1.00283 0.94334 0.91236 0.93024 0.96618 0.96586 0.92745 0.92758 0.89338 0.89272 0.76089 0.89471 0.89754 0.88921 0.92618 0.82975 0.73034 0.77569 0.91498 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 11 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 12 C 0.51 7.71 7.82 -10.99 -0.09 7.62 16 13 O -0.54 -10.07 15.68 5.55 0.09 -9.98 16 14 N -0.73 -7.80 5.00 -52.47 -0.26 -8.06 16 15 C 0.15 1.31 3.36 -66.55 -0.22 1.09 16 16 H 0.10 1.01 7.64 -51.93 -0.40 0.61 16 17 C -0.13 -1.13 6.78 -25.35 -0.17 -1.30 16 18 C 0.04 0.30 6.36 -2.18 -0.01 0.29 16 19 N -0.47 -3.86 5.46 -168.66 -0.92 -4.78 16 20 C 0.37 3.13 5.94 -154.73 -0.92 2.21 16 21 C -0.27 -1.91 8.08 -38.96 -0.31 -2.22 16 22 C 0.37 2.81 7.82 -16.79 -0.13 2.68 16 23 O -0.48 -2.82 13.57 -18.34 -0.25 -3.07 16 24 N -0.55 -4.65 10.46 -14.73 -0.15 -4.80 16 25 C 0.33 2.53 12.28 -92.24 -1.13 1.40 16 26 N -0.51 -4.71 10.47 -13.87 -0.15 -4.86 16 27 C 0.03 0.23 5.95 -2.18 -0.01 0.21 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.21 8.10 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.40 3.58 8.56 -40.82 -0.35 3.23 16 36 H 0.09 0.87 7.95 -51.93 -0.41 0.45 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.34 6.80 -51.93 -0.35 -0.01 16 40 H 0.15 0.78 6.86 -52.49 -0.36 0.42 16 41 H 0.41 0.31 9.06 45.56 0.41 0.72 16 42 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.07 0.36 6.52 -51.93 -0.34 0.03 16 44 H 0.10 0.70 7.99 -51.93 -0.41 0.28 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -36.50 369.40 -9.75 -46.25 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.55 Total: -0.99 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.83 Total: -5.93 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.75 Total: -48.84 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.16 Total: -13.05 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.50 -9.75 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304646160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.877 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds