Wall clock time and date at job start Tue Mar 31 2020 12:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46983 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00364 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00027 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.28746 * 35.67472 * 15 14 12 17 17 C 1.54256 * 110.32228 * 273.54572 * 15 14 12 18 18 C 1.54382 * 105.06062 * 241.10586 * 17 15 14 19 19 N 1.48558 * 104.59501 * 23.85253 * 18 17 15 20 20 C 1.38605 * 110.99812 * 200.96198 * 19 18 17 21 21 C 1.39278 * 120.49522 * 59.87564 * 20 19 18 22 22 C 1.38881 * 118.28093 * 179.97438 * 21 20 19 23 23 O 1.35548 * 120.46149 * 180.02562 * 22 21 20 24 24 N 1.33034 * 119.07376 * 0.02562 * 22 21 20 25 25 C 1.31737 * 120.91152 * 359.97438 * 24 22 21 26 26 N 1.31750 * 121.89437 * 359.74408 * 25 24 22 27 27 C 1.48564 * 104.22083 * 320.51962 * 19 18 17 28 28 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 30 30 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 31 31 H 1.09006 * 109.47053 * 299.99704 * 10 9 7 32 32 H 1.08997 * 109.47419 * 60.00089 * 10 9 7 33 33 H 1.08998 * 109.46983 * 299.99930 * 11 10 9 34 34 H 1.08997 * 109.47600 * 59.99950 * 11 10 9 35 35 H 0.97005 * 120.00166 * 0.02562 * 14 12 11 36 36 H 1.09002 * 110.32584 * 0.02562 * 17 15 14 37 37 H 1.08997 * 110.32359 * 122.20607 * 17 15 14 38 38 H 1.09000 * 110.41174 * 142.63665 * 18 17 15 39 39 H 1.08997 * 110.40749 * 265.07361 * 18 17 15 40 40 H 1.07994 * 120.85864 * 359.95587 * 21 20 19 41 41 H 0.96698 * 113.99895 * 90.00514 * 23 22 21 42 42 H 1.08000 * 119.05456 * 180.02562 * 25 24 22 43 43 H 1.09002 * 110.40863 * 280.70107 * 27 19 18 44 44 H 1.09005 * 110.40908 * 158.26554 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2451 -3.6621 -0.0172 11 6 1.4800 -4.9871 -0.0247 12 6 2.4593 -6.1325 -0.0301 13 8 3.6517 -5.9111 -0.0276 14 7 2.0100 -7.4032 -0.0366 15 6 2.9620 -8.5168 -0.0412 16 1 3.8383 -8.2673 0.5570 17 6 3.3792 -8.8589 -1.4863 18 6 2.9246 -10.3187 -1.7002 19 7 1.8270 -10.5165 -0.7188 20 6 1.6325 -11.8635 -0.4561 21 6 2.6632 -12.6365 0.0729 22 6 2.4177 -13.9812 0.3188 23 8 3.3890 -14.7741 0.8336 24 7 1.2159 -14.4800 0.0419 25 6 0.2653 -13.7173 -0.4581 26 7 0.4560 -12.4364 -0.7006 27 6 2.2903 -9.7985 0.4965 28 1 -0.4850 0.8401 0.0040 29 1 0.6240 -2.5614 0.8771 30 1 0.6246 -2.5525 -0.9029 31 1 2.8725 -3.6002 -0.9065 32 1 2.8711 -3.6087 0.8735 33 1 0.8524 -5.0492 0.8642 34 1 0.8543 -5.0404 -0.9157 35 1 1.0562 -7.5804 -0.0382 36 1 2.8761 -8.1980 -2.1922 37 1 4.4606 -8.7790 -1.5970 38 1 2.5555 -10.4568 -2.7164 39 1 3.7454 -11.0062 -1.4962 40 1 3.6284 -12.2016 0.2862 41 1 3.4000 -14.8055 1.8000 42 1 -0.6994 -14.1535 -0.6712 43 1 3.0118 -10.4048 1.0443 44 1 1.4434 -9.5452 1.1344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001304646160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:49 Heat of formation + Delta-G solvation = -47.661250 kcal Electronic energy + Delta-G solvation = -25645.270438 eV Core-core repulsion = 21790.006238 eV Total energy + Delta-G solvation = -3855.264200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51338 -41.07301 -39.79675 -38.55867 -36.20682 -35.74891 -34.09202 -33.81692 -32.63037 -30.71385 -30.19967 -29.02237 -25.97655 -25.58218 -24.71565 -22.73087 -22.63489 -21.60649 -21.17037 -20.03628 -19.16110 -18.58792 -18.03497 -17.71285 -17.33277 -16.78305 -16.64470 -16.56221 -16.46386 -15.97021 -15.47785 -15.24215 -15.02243 -14.75726 -14.30850 -14.19139 -13.89458 -13.66727 -13.48742 -13.30928 -13.21472 -12.95970 -12.57726 -12.54221 -12.48641 -12.37264 -12.04501 -11.83551 -11.52209 -11.43838 -11.42187 -11.25448 -10.76069 -10.67312 -10.60679 -10.52554 -10.12207 -9.76155 -8.18559 -6.28493 -0.33455 -0.22692 1.40485 1.43395 1.51463 1.69871 2.15617 2.22448 2.28045 2.43274 2.54562 3.14227 3.21044 3.31804 3.56903 3.69701 3.83583 3.95198 4.02195 4.08810 4.21154 4.24058 4.28362 4.31256 4.35614 4.52435 4.60260 4.72527 4.82206 4.89731 4.96081 5.00943 5.08209 5.14856 5.22332 5.34204 5.55253 5.61840 5.62945 5.78184 5.89179 6.00583 6.29181 6.47277 6.59929 6.87097 6.99706 7.31940 7.39971 8.92643 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038045 B = 0.001806 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.794288 B =15500.095548 C =15843.598473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.521 3.479 13 O -0.580 6.580 14 N -0.711 5.711 15 C 0.143 3.857 16 H 0.095 0.905 17 C -0.130 4.130 18 C 0.049 3.951 19 N -0.484 5.484 20 C 0.358 3.642 21 C -0.269 4.269 22 C 0.368 3.632 23 O -0.484 6.484 24 N -0.566 5.566 25 C 0.333 3.667 26 N -0.532 5.532 27 C 0.041 3.959 28 H 0.264 0.736 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.172 0.828 41 H 0.430 0.570 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -32.356 1.650 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.119 4.119 11 C -0.172 4.172 12 C 0.309 3.691 13 O -0.459 6.459 14 N -0.364 5.364 15 C 0.037 3.963 16 H 0.113 0.887 17 C -0.170 4.170 18 C -0.077 4.077 19 N -0.207 5.207 20 C 0.120 3.880 21 C -0.295 4.295 22 C 0.181 3.819 23 O -0.295 6.295 24 N -0.291 5.291 25 C 0.044 3.956 26 N -0.249 5.249 27 C -0.085 4.085 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.189 0.811 41 H 0.294 0.706 42 H 0.249 0.751 43 H 0.107 0.893 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.136 -32.412 0.745 32.571 hybrid contribution 1.175 0.963 0.812 1.722 sum 4.311 -31.449 1.557 31.781 Atomic orbital electron populations 1.70066 1.07501 1.27801 1.51558 1.25925 0.95843 1.03104 0.94764 0.85552 0.78367 0.78388 0.79050 1.20455 1.19383 1.19461 1.21674 0.93360 0.92796 1.50703 0.92968 1.19031 0.94268 0.92501 0.95455 1.21148 0.97553 0.92943 1.00304 1.21678 0.98053 0.91899 1.05578 1.20943 0.89304 0.84701 0.74183 1.90663 1.18735 1.85441 1.51109 1.46009 1.11014 1.04283 1.75060 1.21646 0.92543 0.85276 0.96798 0.88736 1.22750 1.02332 0.95286 0.96582 1.23276 0.91114 0.96890 0.96459 1.62268 1.42529 1.05590 1.10307 1.20160 0.88342 0.90673 0.88853 1.23540 1.03787 0.94742 1.07474 1.19475 0.85571 0.86391 0.90434 1.84691 1.47544 1.68014 1.29294 1.68083 1.02107 1.41965 1.16968 1.25416 0.98212 0.84197 0.87733 1.68191 1.23902 1.13848 1.18924 1.23562 1.00715 0.93279 0.90960 0.92709 0.98126 0.98207 0.94107 0.93975 0.87508 0.87735 0.74734 0.91145 0.89303 0.89306 0.91007 0.81092 0.70598 0.75098 0.89343 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.08 -3.52 4.44 30.60 0.14 -3.39 16 11 C -0.13 -4.16 5.70 29.85 0.17 -3.99 16 12 C 0.52 15.24 7.82 87.66 0.69 15.93 16 13 O -0.58 -21.70 15.68 -3.05 -0.05 -21.75 16 14 N -0.71 -14.21 5.00 -438.29 -2.19 -16.40 16 15 C 0.14 2.35 3.36 45.88 0.15 2.50 16 16 H 0.09 1.76 7.64 -2.39 -0.02 1.74 16 17 C -0.13 -2.04 6.78 31.49 0.21 -1.83 16 18 C 0.05 0.63 6.36 86.45 0.55 1.18 16 19 N -0.48 -7.04 5.46 -687.51 -3.76 -10.80 16 20 C 0.36 5.45 5.94 133.02 0.79 6.24 16 21 C -0.27 -3.13 8.08 22.67 0.18 -2.95 16 22 C 0.37 4.90 7.82 84.67 0.66 5.57 16 23 O -0.48 -4.74 13.57 -88.54 -1.20 -5.94 16 24 N -0.57 -8.83 10.46 -313.05 -3.27 -12.10 16 25 C 0.33 4.61 12.28 180.91 2.22 6.83 16 26 N -0.53 -9.23 10.47 -197.79 -2.07 -11.31 16 27 C 0.04 0.49 5.95 86.45 0.51 1.00 16 28 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 31 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 32 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.42 6.59 8.56 -92.70 -0.79 5.79 16 36 H 0.07 1.36 7.95 -2.39 -0.02 1.34 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 0.70 6.80 -2.39 -0.02 0.68 16 40 H 0.17 1.22 6.86 -2.91 -0.02 1.20 16 41 H 0.43 -0.28 9.06 -74.06 -0.67 -0.95 16 42 H 0.23 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.09 0.70 6.52 -2.39 -0.02 0.68 16 44 H 0.10 1.19 7.99 -2.38 -0.02 1.17 16 Total: -1.00 -79.07 369.40 -3.53 -82.59 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -0.42 Total: 7.60 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 7.12 Total: -2.83 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -11.01 Total: -106.86 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.25 Total: -27.69 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.07 -3.53 -82.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304646160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.933 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds