Wall clock time and date at job start Tue Mar 31 2020 12:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86790 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47124 * 269.99960 * 3 2 1 5 5 H 1.48503 * 109.47468 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.47128 * 150.00036 * 3 2 1 7 7 C 1.37879 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00362 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.50710 * 109.47038 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99853 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99928 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99744 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.35432 * 327.14703 * 15 14 12 17 17 C 1.54601 * 110.30661 * 89.28823 * 15 14 12 18 18 C 1.54933 * 102.92411 * 140.87231 * 17 15 14 19 19 N 1.48538 * 103.22554 * 322.58681 * 18 17 15 20 20 C 1.38600 * 111.00173 * 159.71972 * 19 18 17 21 21 C 1.39276 * 120.49774 * 62.59984 * 20 19 18 22 22 C 1.38879 * 118.29038 * 179.97438 * 21 20 19 23 23 O 1.35544 * 120.47096 * 179.97438 * 22 21 20 24 24 N 1.33035 * 119.06920 * 0.02562 * 22 21 20 25 25 C 1.31744 * 120.91271 * 359.97438 * 24 22 21 26 26 N 1.31761 * 121.89184 * 0.02562 * 25 24 22 27 27 C 1.47908 * 105.82003 * 39.20483 * 19 18 17 28 28 H 0.96996 * 119.99475 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47077 * 60.00009 * 9 7 2 30 30 H 1.09008 * 109.47031 * 300.00366 * 9 7 2 31 31 H 1.08996 * 109.47381 * 59.99890 * 10 9 7 32 32 H 1.09003 * 109.46981 * 299.99523 * 10 9 7 33 33 H 1.09002 * 109.47268 * 60.00168 * 11 10 9 34 34 H 1.08996 * 109.47217 * 299.99616 * 11 10 9 35 35 H 0.96999 * 120.00480 * 0.02562 * 14 12 11 36 36 H 1.09001 * 110.72248 * 259.23286 * 17 15 14 37 37 H 1.08999 * 110.71966 * 22.51330 * 17 15 14 38 38 H 1.08992 * 110.67108 * 204.15178 * 18 17 15 39 39 H 1.08995 * 110.66427 * 81.01630 * 18 17 15 40 40 H 1.07999 * 120.85742 * 359.96421 * 21 20 19 41 41 H 0.96701 * 114.00218 * 270.03206 * 23 22 21 42 42 H 1.07999 * 119.05570 * 179.72279 * 25 24 22 43 43 H 1.08996 * 109.91486 * 94.02619 * 27 19 18 44 44 H 1.09004 * 109.91582 * 215.11937 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0538 -4.0575 0.0009 13 8 5.2657 -4.9793 0.0009 14 7 7.3789 -4.3038 0.0005 15 6 7.8672 -5.6851 0.0018 16 1 7.1844 -6.3280 0.5573 17 6 8.0284 -6.1985 -1.4475 18 6 9.3340 -7.0297 -1.3775 19 7 10.1865 -6.2457 -0.4474 20 6 11.1928 -7.0341 0.0881 21 6 12.1596 -7.6033 -0.7371 22 6 13.1473 -8.3848 -0.1519 23 8 14.1096 -8.9603 -0.9134 24 7 13.1351 -8.5615 1.1666 25 6 12.2037 -8.0067 1.9152 26 7 11.2497 -7.2587 1.3990 27 6 9.2796 -5.7520 0.6116 28 1 -0.4849 0.8401 -0.0004 29 1 3.8752 -0.6797 0.8894 30 1 3.8746 -0.6808 -0.8906 31 1 3.6579 -3.1507 -0.8896 32 1 3.6586 -3.1502 0.8904 33 1 5.9148 -2.1227 0.8901 34 1 5.9148 -2.1229 -0.8899 35 1 8.0093 -3.5666 0.0002 36 1 7.1847 -6.8285 -1.7295 37 1 8.1382 -5.3655 -2.1418 38 1 9.7995 -7.0984 -2.3606 39 1 9.1366 -8.0227 -0.9738 40 1 12.1417 -7.4412 -1.8047 41 1 13.8812 -9.8433 -1.2348 42 1 12.2198 -8.1738 2.9821 43 1 9.2869 -6.4399 1.4571 44 1 9.5941 -4.7605 0.9373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001304646161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:53 Heat of formation + Delta-G solvation = -17.157656 kcal Electronic energy + Delta-G solvation = -25580.015344 eV Core-core repulsion = 21726.073880 eV Total energy + Delta-G solvation = -3853.941465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90960 -40.19703 -39.00316 -37.93292 -35.14247 -34.26834 -33.21027 -32.21878 -31.94053 -30.24293 -29.27476 -27.91414 -24.90736 -24.48604 -23.64585 -22.10394 -21.32284 -20.56195 -19.85011 -19.54273 -18.32988 -17.59911 -16.93342 -16.71867 -16.46348 -16.02084 -15.94776 -15.47046 -15.21740 -14.95038 -14.79183 -14.23333 -13.81279 -13.69503 -13.32623 -13.16453 -13.01539 -12.69762 -12.55093 -12.35558 -12.09176 -11.92174 -11.60264 -11.35492 -11.29723 -11.01638 -10.97864 -10.78460 -10.34674 -10.02015 -9.89108 -9.84811 -9.70409 -9.44535 -9.22880 -9.13377 -9.08195 -8.50745 -6.00551 -3.98285 0.31988 0.41654 2.60084 2.79832 2.98804 3.10389 3.18412 3.31670 3.38980 3.41751 3.63549 3.90818 4.20195 4.26384 4.43211 4.47289 4.60289 4.70880 4.78370 4.88829 4.92992 5.02113 5.08563 5.30549 5.32759 5.35589 5.45948 5.56450 5.58654 5.61139 5.70032 5.86826 6.10837 6.32338 6.39260 6.47681 6.55925 6.68913 6.79128 6.92307 7.37292 7.45800 7.49121 7.54171 7.82948 8.34531 8.59397 9.06176 9.61519 11.13119 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.001805 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.147649 B =15511.487686 C =15633.869866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.515 3.485 13 O -0.534 6.534 14 N -0.732 5.732 15 C 0.135 3.865 16 H 0.101 0.899 17 C -0.136 4.136 18 C 0.046 3.954 19 N -0.457 5.457 20 C 0.364 3.636 21 C -0.252 4.252 22 C 0.374 3.626 23 O -0.476 6.476 24 N -0.560 5.560 25 C 0.347 3.653 26 N -0.560 5.560 27 C 0.029 3.971 28 H 0.262 0.738 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.154 0.846 41 H 0.409 0.591 42 H 0.204 0.796 43 H 0.096 0.904 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.220 -17.975 -1.650 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.303 3.697 13 O -0.409 6.409 14 N -0.385 5.385 15 C 0.029 3.971 16 H 0.119 0.881 17 C -0.175 4.175 18 C -0.079 4.079 19 N -0.175 5.175 20 C 0.125 3.875 21 C -0.278 4.278 22 C 0.189 3.811 23 O -0.284 6.284 24 N -0.287 5.287 25 C 0.057 3.943 26 N -0.282 5.282 27 C -0.098 4.098 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.171 0.829 41 H 0.269 0.731 42 H 0.220 0.780 43 H 0.114 0.886 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 29.035 -17.724 -0.969 34.031 hybrid contribution 0.412 0.528 -0.658 0.939 sum 29.447 -17.197 -1.628 34.139 Atomic orbital electron populations 1.69929 1.06299 1.26778 1.51342 1.25060 0.94754 0.99163 0.94712 0.86757 0.80316 0.83635 0.78403 1.20365 1.21453 1.19049 1.21164 0.89540 0.94531 1.50441 0.90948 1.19612 0.97319 0.92190 0.96113 1.21263 0.89210 0.99539 1.02519 1.21879 1.00704 0.91804 1.03777 1.21213 0.81362 0.92692 0.74460 1.90692 1.55168 1.46725 1.48331 1.46205 1.07737 1.07342 1.77241 1.21734 0.94369 0.85021 0.95971 0.88099 1.23030 0.96194 1.00525 0.97737 1.23381 0.92489 0.95465 0.96556 1.61741 1.10787 1.29221 1.15792 1.20143 0.92736 0.86298 0.88332 1.22350 0.96582 1.05632 1.03215 1.19213 0.84728 0.90328 0.86862 1.84729 1.40595 1.36515 1.66520 1.68019 1.27241 1.27015 1.06406 1.24681 0.83149 0.86067 1.00364 1.68378 1.27399 1.19348 1.13066 1.23243 0.89642 1.03147 0.93729 0.92807 0.96646 0.97103 0.92115 0.92082 0.89302 0.89314 0.76370 0.89308 0.89470 0.88491 0.92031 0.82867 0.73148 0.78012 0.88605 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 2 C 0.06 1.89 5.47 -17.81 -0.10 1.79 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.84 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 10 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 11 C -0.14 -2.10 5.70 -27.88 -0.16 -2.25 16 12 C 0.51 7.39 7.83 -10.98 -0.09 7.31 16 13 O -0.53 -9.85 15.63 5.56 0.09 -9.76 16 14 N -0.73 -7.38 5.06 -52.49 -0.27 -7.64 16 15 C 0.14 1.23 3.34 -66.57 -0.22 1.01 16 16 H 0.10 1.10 7.56 -51.93 -0.39 0.71 16 17 C -0.14 -1.06 6.78 -24.87 -0.17 -1.23 16 18 C 0.05 0.29 6.08 -1.90 -0.01 0.28 16 19 N -0.46 -3.49 5.30 -169.12 -0.90 -4.39 16 20 C 0.36 2.99 6.21 -154.74 -0.96 2.02 16 21 C -0.25 -1.78 9.52 -38.96 -0.37 -2.15 16 22 C 0.37 2.87 7.82 -16.79 -0.13 2.74 16 23 O -0.48 -2.83 13.57 -18.33 -0.25 -3.08 16 24 N -0.56 -4.83 10.46 -14.73 -0.15 -4.99 16 25 C 0.35 2.59 12.28 -92.23 -1.13 1.46 16 26 N -0.56 -4.78 8.30 -13.87 -0.12 -4.90 16 27 C 0.03 0.23 6.13 -2.75 -0.02 0.22 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.25 7.57 -51.92 -0.39 -0.15 16 31 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.40 3.07 8.36 -40.82 -0.34 2.73 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.37 7.99 -51.93 -0.42 -0.05 16 40 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.41 0.25 9.06 45.56 0.41 0.67 16 42 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.10 0.82 6.53 -51.93 -0.34 0.49 16 44 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -37.00 366.98 -9.50 -46.50 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.62 Total: -0.19 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.92 Total: -6.61 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.66 Total: -49.44 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.16 Total: -12.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.00 -9.50 -46.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304646161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.343 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds