Wall clock time and date at job start Tue Mar 31 2020 12:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86790 * 120.00076 * 2 1 4 4 H 1.48502 * 109.47124 * 269.99960 * 3 2 1 5 5 H 1.48503 * 109.47468 * 29.99985 * 3 2 1 6 6 H 1.48502 * 109.47128 * 150.00036 * 3 2 1 7 7 C 1.37879 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00362 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.50710 * 109.47038 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99853 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99928 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99744 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.35432 * 327.14703 * 15 14 12 17 17 C 1.54601 * 110.30661 * 89.28823 * 15 14 12 18 18 C 1.54933 * 102.92411 * 140.87231 * 17 15 14 19 19 N 1.48538 * 103.22554 * 322.58681 * 18 17 15 20 20 C 1.38600 * 111.00173 * 159.71972 * 19 18 17 21 21 C 1.39276 * 120.49774 * 62.59984 * 20 19 18 22 22 C 1.38879 * 118.29038 * 179.97438 * 21 20 19 23 23 O 1.35544 * 120.47096 * 179.97438 * 22 21 20 24 24 N 1.33035 * 119.06920 * 0.02562 * 22 21 20 25 25 C 1.31744 * 120.91271 * 359.97438 * 24 22 21 26 26 N 1.31761 * 121.89184 * 0.02562 * 25 24 22 27 27 C 1.47908 * 105.82003 * 39.20483 * 19 18 17 28 28 H 0.96996 * 119.99475 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47077 * 60.00009 * 9 7 2 30 30 H 1.09008 * 109.47031 * 300.00366 * 9 7 2 31 31 H 1.08996 * 109.47381 * 59.99890 * 10 9 7 32 32 H 1.09003 * 109.46981 * 299.99523 * 10 9 7 33 33 H 1.09002 * 109.47268 * 60.00168 * 11 10 9 34 34 H 1.08996 * 109.47217 * 299.99616 * 11 10 9 35 35 H 0.96999 * 120.00480 * 0.02562 * 14 12 11 36 36 H 1.09001 * 110.72248 * 259.23286 * 17 15 14 37 37 H 1.08999 * 110.71966 * 22.51330 * 17 15 14 38 38 H 1.08992 * 110.67108 * 204.15178 * 18 17 15 39 39 H 1.08995 * 110.66427 * 81.01630 * 18 17 15 40 40 H 1.07999 * 120.85742 * 359.96421 * 21 20 19 41 41 H 0.96701 * 114.00218 * 270.03206 * 23 22 21 42 42 H 1.07999 * 119.05570 * 179.72279 * 25 24 22 43 43 H 1.08996 * 109.91486 * 94.02619 * 27 19 18 44 44 H 1.09004 * 109.91582 * 215.11937 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 6 6.0538 -4.0575 0.0009 13 8 5.2657 -4.9793 0.0009 14 7 7.3789 -4.3038 0.0005 15 6 7.8672 -5.6851 0.0018 16 1 7.1844 -6.3280 0.5573 17 6 8.0284 -6.1985 -1.4475 18 6 9.3340 -7.0297 -1.3775 19 7 10.1865 -6.2457 -0.4474 20 6 11.1928 -7.0341 0.0881 21 6 12.1596 -7.6033 -0.7371 22 6 13.1473 -8.3848 -0.1519 23 8 14.1096 -8.9603 -0.9134 24 7 13.1351 -8.5615 1.1666 25 6 12.2037 -8.0067 1.9152 26 7 11.2497 -7.2587 1.3990 27 6 9.2796 -5.7520 0.6116 28 1 -0.4849 0.8401 -0.0004 29 1 3.8752 -0.6797 0.8894 30 1 3.8746 -0.6808 -0.8906 31 1 3.6579 -3.1507 -0.8896 32 1 3.6586 -3.1502 0.8904 33 1 5.9148 -2.1227 0.8901 34 1 5.9148 -2.1229 -0.8899 35 1 8.0093 -3.5666 0.0002 36 1 7.1847 -6.8285 -1.7295 37 1 8.1382 -5.3655 -2.1418 38 1 9.7995 -7.0984 -2.3606 39 1 9.1366 -8.0227 -0.9738 40 1 12.1417 -7.4412 -1.8047 41 1 13.8812 -9.8433 -1.2348 42 1 12.2198 -8.1738 2.9821 43 1 9.2869 -6.4399 1.4571 44 1 9.5941 -4.7605 0.9373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001304646161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:52 Heat of formation + Delta-G solvation = -47.421453 kcal Electronic energy + Delta-G solvation = -25581.327681 eV Core-core repulsion = 21726.073880 eV Total energy + Delta-G solvation = -3855.253802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.45860 -41.06595 -39.83843 -38.44822 -36.24291 -35.79951 -34.16383 -33.82614 -32.68868 -30.91814 -30.43069 -29.14361 -25.76545 -25.39266 -24.74741 -22.66682 -22.45120 -21.70417 -21.26055 -20.03331 -18.97349 -18.85692 -18.23490 -17.63916 -17.48566 -16.74653 -16.54338 -16.51086 -16.22789 -15.74541 -15.66831 -15.33002 -15.08388 -14.84104 -14.64621 -14.18016 -13.99536 -13.73193 -13.57158 -13.31883 -13.11653 -12.92644 -12.74486 -12.63581 -12.46129 -11.99106 -11.89456 -11.76988 -11.70739 -11.55644 -11.47072 -11.30832 -10.87378 -10.77044 -10.73609 -10.45282 -10.10268 -9.70510 -8.26534 -6.31920 -0.18206 -0.13446 1.39472 1.42892 1.54938 1.68223 2.06312 2.23703 2.40112 2.49634 2.63598 3.08633 3.12260 3.29513 3.64161 3.67858 3.91548 3.98551 4.05376 4.11998 4.17241 4.19745 4.25567 4.29836 4.50792 4.59022 4.64598 4.76033 4.81284 4.86902 4.95125 4.99815 5.03690 5.06965 5.12353 5.22864 5.51352 5.60709 5.62817 5.69911 5.76539 5.94280 6.32258 6.52270 6.58264 6.76976 7.00938 7.30816 7.32753 8.91040 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.001805 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.147649 B =15511.487686 C =15633.869866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.019 0.981 9 C -0.010 4.010 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.517 3.483 13 O -0.585 6.585 14 N -0.709 5.709 15 C 0.133 3.867 16 H 0.080 0.920 17 C -0.132 4.132 18 C 0.053 3.947 19 N -0.457 5.457 20 C 0.352 3.648 21 C -0.249 4.249 22 C 0.370 3.630 23 O -0.484 6.484 24 N -0.581 5.581 25 C 0.342 3.658 26 N -0.576 5.576 27 C 0.040 3.960 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.063 0.937 40 H 0.171 0.829 41 H 0.430 0.570 42 H 0.227 0.773 43 H 0.089 0.911 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.858 -16.652 -2.168 36.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.038 0.962 9 C -0.048 4.048 10 C -0.119 4.119 11 C -0.171 4.171 12 C 0.305 3.695 13 O -0.464 6.464 14 N -0.363 5.363 15 C 0.027 3.973 16 H 0.098 0.902 17 C -0.171 4.171 18 C -0.072 4.072 19 N -0.175 5.175 20 C 0.113 3.887 21 C -0.275 4.275 22 C 0.185 3.815 23 O -0.295 6.295 24 N -0.308 5.308 25 C 0.053 3.947 26 N -0.298 5.298 27 C -0.088 4.088 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.256 0.744 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.189 0.811 41 H 0.293 0.707 42 H 0.243 0.757 43 H 0.107 0.893 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 32.741 -16.430 -1.501 36.663 hybrid contribution -0.757 -0.030 -0.503 0.909 sum 31.984 -16.460 -2.004 36.027 Atomic orbital electron populations 1.70113 1.08666 1.28226 1.52758 1.26203 0.95752 1.04118 0.93929 0.85498 0.79668 0.77099 0.79371 1.18909 1.21312 1.15865 1.21572 0.92775 0.92805 1.50585 0.96224 1.19561 0.93417 0.94492 0.97309 1.21040 0.93619 0.96983 1.00285 1.21726 0.96175 0.92722 1.06517 1.21117 0.82305 0.91988 0.74089 1.90688 1.56727 1.47952 1.51044 1.45963 1.06525 1.08530 1.75271 1.21756 0.94596 0.83955 0.96944 0.90218 1.22956 0.96889 1.00692 0.96559 1.23407 0.91453 0.94951 0.97395 1.61808 1.10666 1.29480 1.15586 1.20323 0.93124 0.86672 0.88573 1.22465 0.96020 1.05039 1.03948 1.19385 0.84913 0.90400 0.86846 1.84683 1.40373 1.38142 1.66270 1.68069 1.27905 1.27732 1.07105 1.25188 0.82610 0.85482 1.01393 1.68401 1.27939 1.19984 1.13450 1.23088 0.88746 1.03344 0.93579 0.92559 0.95171 0.95240 0.94444 0.94578 0.86584 0.86402 0.74421 0.90205 0.89232 0.86315 0.91879 0.81125 0.70679 0.75657 0.89300 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.71 13.96 21.45 0.30 -61.41 16 2 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 3 Si 0.96 43.79 27.47 68.60 1.88 45.67 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 7 C -0.54 -32.31 9.66 25.60 0.25 -32.06 16 8 H 0.02 1.32 7.99 -2.91 -0.02 1.30 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.08 -3.30 4.44 30.59 0.14 -3.17 16 11 C -0.13 -3.57 5.70 29.85 0.17 -3.40 16 12 C 0.52 14.25 7.83 87.66 0.69 14.94 16 13 O -0.58 -22.02 15.63 -3.03 -0.05 -22.07 16 14 N -0.71 -12.90 5.06 -438.36 -2.22 -15.11 16 15 C 0.13 2.30 3.34 45.87 0.15 2.45 16 16 H 0.08 1.76 7.56 -2.39 -0.02 1.74 16 17 C -0.13 -1.89 6.78 31.80 0.22 -1.67 16 18 C 0.05 0.55 6.08 86.65 0.53 1.08 16 19 N -0.46 -6.03 5.30 -688.98 -3.65 -9.68 16 20 C 0.35 5.15 6.21 133.02 0.83 5.97 16 21 C -0.25 -3.02 9.52 22.67 0.22 -2.80 16 22 C 0.37 5.08 7.82 84.66 0.66 5.74 16 23 O -0.48 -4.88 13.57 -88.49 -1.20 -6.09 16 24 N -0.58 -9.30 10.46 -313.04 -3.27 -12.57 16 25 C 0.34 4.70 12.28 180.91 2.22 6.92 16 26 N -0.58 -9.08 8.30 -197.78 -1.64 -10.72 16 27 C 0.04 0.57 6.13 86.44 0.53 1.10 16 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 30 H 0.03 1.26 7.57 -2.38 -0.02 1.24 16 31 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 32 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.42 5.00 8.36 -92.71 -0.77 4.22 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.27 8.06 -2.39 -0.02 1.25 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.66 7.99 -2.39 -0.02 0.64 16 40 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.43 -0.26 9.06 -74.06 -0.67 -0.93 16 42 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.09 1.44 6.53 -2.39 -0.02 1.43 16 44 H 0.10 1.31 7.66 -2.38 -0.02 1.29 16 Total: -1.00 -83.95 366.98 -3.14 -87.09 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -0.46 Total: 9.94 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 7.17 Total: -5.06 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -10.49 Total: -109.49 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.25 Total: -28.16 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -83.95 -3.14 -87.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304646161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.672 kcal (2) G-P(sol) polarization free energy of solvation -83.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds