Wall clock time and date at job start Tue Mar 31 2020 12:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00314 * 2 1 4 4 H 1.48501 * 109.47044 * 270.00376 * 3 2 1 5 5 H 1.48504 * 109.47208 * 29.99882 * 3 2 1 6 6 H 1.48493 * 109.47102 * 150.00157 * 3 2 1 7 7 C 1.38812 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 163.07165 * 7 2 1 9 9 N 1.36939 * 119.99927 * 343.07031 * 7 2 1 10 10 C 1.46916 * 120.63461 * 331.84844 * 9 7 2 11 11 C 1.53185 * 108.77818 * 233.58757 * 10 9 7 12 12 C 1.53037 * 109.31176 * 305.36281 * 11 10 9 13 13 N 1.46500 * 109.46029 * 181.38317 * 12 11 10 14 14 C 1.34787 * 120.00042 * 154.97209 * 13 12 11 15 15 O 1.21578 * 119.99734 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99880 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.46991 * 179.97438 * 17 16 14 19 19 C 1.38427 * 120.44200 * 105.00459 * 18 17 16 20 20 C 1.38788 * 118.48214 * 180.02562 * 19 18 17 21 21 C 1.38084 * 119.29022 * 359.97438 * 20 19 18 22 22 N 1.31934 * 120.83603 * 359.97438 * 21 20 19 23 23 C 1.32285 * 121.64766 * 0.02562 * 22 21 20 24 24 O 1.35675 * 119.68453 * 179.72439 * 23 22 21 25 25 C 1.53040 * 109.52726 * 61.37561 * 12 11 10 26 26 C 1.46930 * 120.62691 * 151.82483 * 9 7 2 27 27 H 0.97004 * 119.99876 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58677 * 113.79878 * 10 9 7 29 29 H 1.09007 * 109.70463 * 353.44766 * 10 9 7 30 30 H 1.09001 * 109.50139 * 185.40985 * 11 10 9 31 31 H 1.09000 * 109.52475 * 65.33250 * 11 10 9 32 32 H 1.08996 * 109.46323 * 301.36010 * 12 11 10 33 33 H 0.97001 * 120.00059 * 334.97413 * 13 12 11 34 34 H 0.97001 * 120.00239 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46658 * 60.00176 * 17 16 14 36 36 H 1.09000 * 109.46909 * 299.99989 * 17 16 14 37 37 H 1.07993 * 120.75413 * 359.97438 * 19 18 17 38 38 H 1.08002 * 120.34851 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.58363 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99959 * 89.99998 * 24 23 22 41 41 H 1.08995 * 109.50154 * 58.57524 * 25 12 11 42 42 H 1.08997 * 109.49692 * 178.67844 * 25 12 11 43 43 H 1.08991 * 109.58616 * 246.20457 * 26 9 7 44 44 H 1.09004 * 109.58775 * 6.48700 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2659 11 6 0.4973 -3.3209 2.4116 12 6 0.8117 -4.7021 1.8325 13 7 1.0393 -5.6497 2.9263 14 6 0.8353 -6.9675 2.7298 15 8 0.4628 -7.3697 1.6446 16 7 1.0442 -7.8392 3.7362 17 6 0.8230 -9.2716 3.5224 18 6 1.1259 -10.0218 4.7937 19 6 0.0981 -10.5172 5.5776 20 6 0.4233 -11.2015 6.7404 21 6 1.7521 -11.3669 7.0777 22 7 2.7099 -10.8841 6.3096 23 6 2.4399 -10.2264 5.1940 24 8 3.4561 -9.7420 4.4368 25 6 2.0673 -4.6178 0.9615 26 6 1.8136 -3.6528 -0.2009 27 1 -0.4850 0.8401 0.0004 28 1 -0.6771 -2.6411 0.7345 29 1 0.0965 -1.3359 1.6676 30 1 -0.3833 -3.3863 3.0508 31 1 1.3468 -2.9701 2.9976 32 1 -0.0283 -5.0417 1.2267 33 1 1.3368 -5.3288 3.7920 34 1 1.3417 -7.5183 4.6019 35 1 1.4787 -9.6256 2.7269 36 1 -0.2159 -9.4404 3.2391 37 1 -0.9333 -10.3736 5.2913 38 1 -0.3546 -11.6003 7.3746 39 1 2.0105 -11.8982 7.9817 40 1 3.7748 -10.3598 3.7645 41 1 2.9021 -4.2544 1.5608 42 1 2.3043 -5.6064 0.5683 43 1 1.0400 -4.0598 -0.8519 44 1 2.7330 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311896794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:55 Heat of formation + Delta-G solvation = -10.383267 kcal Electronic energy + Delta-G solvation = -26398.356391 eV Core-core repulsion = 22544.708686 eV Total energy + Delta-G solvation = -3853.647705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07985 -39.81374 -37.52914 -37.41979 -35.34003 -34.28464 -32.89531 -31.99318 -30.93051 -30.02364 -29.25141 -26.68458 -24.80856 -23.89704 -22.71344 -22.19366 -21.80607 -20.56339 -19.40610 -19.22399 -18.19271 -17.39855 -16.94769 -16.61954 -16.10325 -15.60604 -15.20995 -14.91314 -14.67684 -14.30984 -13.93469 -13.71545 -13.60594 -13.51451 -13.49697 -13.17449 -12.89670 -12.54747 -12.32944 -12.26803 -12.02263 -11.41054 -11.08855 -10.81810 -10.68259 -10.47482 -10.42715 -10.23239 -10.02527 -9.99427 -9.89635 -9.72495 -9.51741 -9.36288 -9.13749 -8.55797 -8.40171 -6.65017 -5.77121 -3.18869 0.42055 0.68094 2.80734 3.07660 3.35593 3.39014 3.42176 3.45870 3.48437 4.05765 4.30207 4.38178 4.42355 4.50598 4.51876 4.91317 4.97467 5.20427 5.37256 5.40943 5.47755 5.54752 5.56331 5.66182 5.70516 5.94810 5.99227 6.13362 6.33896 6.39025 6.40875 6.54314 6.62362 6.66052 6.85022 6.94309 7.03497 7.05292 7.15661 7.35498 7.43014 7.64982 7.81874 8.18116 8.47412 8.78923 9.23547 9.86948 10.44223 11.31888 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.002197 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.248423 B =12741.161974 C =12850.402404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.704 3.296 15 O -0.592 6.592 16 N -0.744 5.744 17 C 0.194 3.806 18 C -0.173 4.173 19 C -0.042 4.042 20 C -0.185 4.185 21 C 0.128 3.872 22 N -0.505 5.505 23 C 0.328 3.672 24 O -0.475 6.475 25 C -0.139 4.139 26 C 0.148 3.852 27 H 0.254 0.746 28 H 0.021 0.979 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.391 0.609 34 H 0.395 0.605 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.403 0.597 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -23.432 14.977 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.404 3.596 15 O -0.471 6.471 16 N -0.401 5.401 17 C 0.070 3.930 18 C -0.177 4.177 19 C -0.068 4.068 20 C -0.205 4.205 21 C -0.029 4.029 22 N -0.224 5.224 23 C 0.149 3.851 24 O -0.282 6.282 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.179 0.821 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.819 -23.224 14.435 27.357 hybrid contribution -0.014 0.812 0.422 0.915 sum 0.805 -22.412 14.857 26.901 Atomic orbital electron populations 1.70026 1.05244 1.25477 1.54076 1.25052 0.95296 0.98413 1.00998 0.86307 0.79137 0.83669 0.77720 1.21403 1.21594 1.20528 1.19180 0.92563 0.84765 1.41504 0.91693 1.44095 1.35823 1.01693 1.49968 1.20732 0.88910 0.97853 0.87680 1.22544 1.00466 0.94805 1.00812 1.20907 0.98324 0.87465 0.86758 1.45543 1.72590 1.04891 1.16127 1.15968 0.78487 0.81276 0.83882 1.90915 1.53791 1.78054 1.24301 1.45062 1.74704 1.05895 1.14421 1.19695 1.01869 0.78962 0.92523 1.21057 0.93419 1.03684 0.99516 1.21572 0.99664 0.93071 0.92497 1.22198 0.98266 1.01663 0.98409 1.22615 0.88171 0.94641 0.97512 1.67266 1.38949 1.10458 1.05727 1.19101 0.85916 0.91010 0.89074 1.84826 1.51408 1.42386 1.49585 1.22387 0.97275 0.99472 0.98813 1.20882 0.97857 0.86501 0.92703 0.93639 0.96105 0.89066 0.92818 0.92245 0.90088 0.77626 0.77202 0.90648 0.90626 0.83921 0.84062 0.82120 0.73889 0.92465 0.92699 0.96176 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.04 2.99 -172.32 -0.52 -15.55 16 10 C 0.17 4.15 5.30 -3.72 -0.02 4.13 16 11 C -0.15 -2.73 5.55 -26.62 -0.15 -2.88 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.88 16 13 N -0.74 -10.85 5.08 -58.64 -0.30 -11.15 16 14 C 0.70 10.72 8.53 -86.91 -0.74 9.98 16 15 O -0.59 -11.40 16.01 5.30 0.08 -11.32 16 16 N -0.74 -8.31 5.55 -66.41 -0.37 -8.68 16 17 C 0.19 1.84 5.43 -5.19 -0.03 1.82 16 18 C -0.17 -1.36 5.28 -104.32 -0.55 -1.91 16 19 C -0.04 -0.25 9.80 -39.31 -0.39 -0.64 16 20 C -0.19 -0.95 10.11 -39.43 -0.40 -1.35 16 21 C 0.13 0.82 11.18 -17.56 -0.20 0.62 16 22 N -0.51 -4.74 10.39 -13.33 -0.14 -4.87 16 23 C 0.33 2.97 7.72 -17.12 -0.13 2.84 16 24 O -0.47 -4.24 12.91 -18.73 -0.24 -4.48 16 25 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 26 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 2.40 6.07 -51.92 -0.31 2.08 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 33 H 0.39 4.73 8.62 -40.82 -0.35 4.37 16 34 H 0.39 3.81 8.48 -40.82 -0.35 3.46 16 35 H 0.08 0.75 8.02 -51.93 -0.42 0.34 16 36 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 37 H 0.14 0.62 8.04 -52.49 -0.42 0.19 16 38 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.40 1.88 9.06 45.56 0.41 2.29 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -35.06 365.97 -9.13 -44.19 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.59 Total: 6.49 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -3.17 Total: 8.81 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.70 Total: -65.90 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.16 Total: -15.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.06 -9.13 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311896794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.803 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds