Wall clock time and date at job start Tue Mar 31 2020 12:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00314 * 2 1 4 4 H 1.48501 * 109.47044 * 270.00376 * 3 2 1 5 5 H 1.48504 * 109.47208 * 29.99882 * 3 2 1 6 6 H 1.48493 * 109.47102 * 150.00157 * 3 2 1 7 7 C 1.38812 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 163.07165 * 7 2 1 9 9 N 1.36939 * 119.99927 * 343.07031 * 7 2 1 10 10 C 1.46916 * 120.63461 * 331.84844 * 9 7 2 11 11 C 1.53185 * 108.77818 * 233.58757 * 10 9 7 12 12 C 1.53037 * 109.31176 * 305.36281 * 11 10 9 13 13 N 1.46500 * 109.46029 * 181.38317 * 12 11 10 14 14 C 1.34787 * 120.00042 * 154.97209 * 13 12 11 15 15 O 1.21578 * 119.99734 * 0.02562 * 14 13 12 16 16 N 1.34771 * 119.99861 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99880 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.46991 * 179.97438 * 17 16 14 19 19 C 1.38427 * 120.44200 * 105.00459 * 18 17 16 20 20 C 1.38788 * 118.48214 * 180.02562 * 19 18 17 21 21 C 1.38084 * 119.29022 * 359.97438 * 20 19 18 22 22 N 1.31934 * 120.83603 * 359.97438 * 21 20 19 23 23 C 1.32285 * 121.64766 * 0.02562 * 22 21 20 24 24 O 1.35675 * 119.68453 * 179.72439 * 23 22 21 25 25 C 1.53040 * 109.52726 * 61.37561 * 12 11 10 26 26 C 1.46930 * 120.62691 * 151.82483 * 9 7 2 27 27 H 0.97004 * 119.99876 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58677 * 113.79878 * 10 9 7 29 29 H 1.09007 * 109.70463 * 353.44766 * 10 9 7 30 30 H 1.09001 * 109.50139 * 185.40985 * 11 10 9 31 31 H 1.09000 * 109.52475 * 65.33250 * 11 10 9 32 32 H 1.08996 * 109.46323 * 301.36010 * 12 11 10 33 33 H 0.97001 * 120.00059 * 334.97413 * 13 12 11 34 34 H 0.97001 * 120.00239 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.46658 * 60.00176 * 17 16 14 36 36 H 1.09000 * 109.46909 * 299.99989 * 17 16 14 37 37 H 1.07993 * 120.75413 * 359.97438 * 19 18 17 38 38 H 1.08002 * 120.34851 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.58363 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99959 * 89.99998 * 24 23 22 41 41 H 1.08995 * 109.50154 * 58.57524 * 25 12 11 42 42 H 1.08997 * 109.49692 * 178.67844 * 25 12 11 43 43 H 1.08991 * 109.58616 * 246.20457 * 26 9 7 44 44 H 1.09004 * 109.58775 * 6.48700 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2659 11 6 0.4973 -3.3209 2.4116 12 6 0.8117 -4.7021 1.8325 13 7 1.0393 -5.6497 2.9263 14 6 0.8353 -6.9675 2.7298 15 8 0.4628 -7.3697 1.6446 16 7 1.0442 -7.8392 3.7362 17 6 0.8230 -9.2716 3.5224 18 6 1.1259 -10.0218 4.7937 19 6 0.0981 -10.5172 5.5776 20 6 0.4233 -11.2015 6.7404 21 6 1.7521 -11.3669 7.0777 22 7 2.7099 -10.8841 6.3096 23 6 2.4399 -10.2264 5.1940 24 8 3.4561 -9.7420 4.4368 25 6 2.0673 -4.6178 0.9615 26 6 1.8136 -3.6528 -0.2009 27 1 -0.4850 0.8401 0.0004 28 1 -0.6771 -2.6411 0.7345 29 1 0.0965 -1.3359 1.6676 30 1 -0.3833 -3.3863 3.0508 31 1 1.3468 -2.9701 2.9976 32 1 -0.0283 -5.0417 1.2267 33 1 1.3368 -5.3288 3.7920 34 1 1.3417 -7.5183 4.6019 35 1 1.4787 -9.6256 2.7269 36 1 -0.2159 -9.4404 3.2391 37 1 -0.9333 -10.3736 5.2913 38 1 -0.3546 -11.6003 7.3746 39 1 2.0105 -11.8982 7.9817 40 1 3.7748 -10.3598 3.7645 41 1 2.9021 -4.2544 1.5608 42 1 2.3043 -5.6064 0.5683 43 1 1.0400 -4.0598 -0.8519 44 1 2.7330 -3.5125 -0.7694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311896794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:55 Heat of formation + Delta-G solvation = -39.344741 kcal Electronic energy + Delta-G solvation = -26399.612255 eV Core-core repulsion = 22544.708686 eV Total energy + Delta-G solvation = -3854.903569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69102 -41.00212 -39.10515 -38.02272 -36.39327 -35.81439 -34.04970 -33.33510 -31.88623 -31.53300 -30.85505 -27.63330 -26.54988 -24.42120 -24.01576 -23.72953 -22.97860 -21.81248 -21.04217 -19.81923 -19.44800 -18.65657 -17.97438 -17.59711 -17.06408 -16.78217 -16.33744 -16.19646 -15.87460 -15.57944 -15.35412 -15.21148 -14.77593 -14.69707 -14.47233 -14.10888 -14.05398 -13.98518 -13.77433 -13.20282 -13.00787 -12.92084 -12.60496 -12.58618 -12.50779 -12.22825 -12.01377 -11.86208 -11.56276 -11.43108 -11.26131 -10.85850 -10.55311 -10.44596 -10.30767 -9.88782 -9.71333 -8.70019 -7.87372 -5.32826 -0.09484 0.19768 1.48488 1.49596 1.59842 1.77336 2.19463 2.52498 2.55955 2.81932 3.27149 3.37778 3.46934 3.67746 3.81396 3.91686 3.93770 4.05248 4.08203 4.35937 4.42736 4.47440 4.51498 4.63399 4.66247 4.74206 4.82540 4.87248 5.03179 5.07916 5.10460 5.16970 5.19038 5.30767 5.44162 5.48135 5.58214 5.61998 5.65237 5.70792 6.01531 6.39708 6.57294 6.93249 7.10648 7.15073 7.61374 7.84548 8.37714 9.19871 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.002197 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.248423 B =12741.161974 C =12850.402404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.128 4.128 12 C 0.182 3.818 13 N -0.728 5.728 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.726 5.726 17 C 0.196 3.804 18 C -0.178 4.178 19 C -0.042 4.042 20 C -0.174 4.174 21 C 0.121 3.879 22 N -0.538 5.538 23 C 0.314 3.686 24 O -0.493 6.493 25 C -0.123 4.123 26 C 0.145 3.855 27 H 0.251 0.749 28 H -0.004 1.004 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.408 0.592 34 H 0.405 0.595 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.162 0.838 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.415 0.585 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.008 0.992 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -24.621 17.272 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.516 6.516 16 N -0.382 5.382 17 C 0.072 3.928 18 C -0.182 4.182 19 C -0.068 4.068 20 C -0.194 4.194 21 C -0.036 4.036 22 N -0.257 5.257 23 C 0.135 3.865 24 O -0.302 6.302 25 C -0.164 4.164 26 C 0.019 3.981 27 H 0.060 0.940 28 H 0.014 0.986 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.243 0.757 34 H 0.240 0.760 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.180 0.820 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.276 0.724 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.026 0.974 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.159 -24.461 16.785 29.688 hybrid contribution -0.135 1.058 -0.278 1.103 sum 1.023 -23.402 16.506 28.656 Atomic orbital electron populations 1.70182 1.06667 1.25959 1.55308 1.25824 0.96075 1.01537 1.01142 0.85258 0.78096 0.79433 0.77519 1.21315 1.21697 1.19469 1.19503 0.92852 0.85852 1.41138 0.91576 1.44353 1.35983 1.02207 1.50756 1.20561 0.87740 0.97709 0.88726 1.22257 1.01880 0.93668 0.98934 1.20487 0.96936 0.87657 0.87258 1.45156 1.72624 1.04447 1.15989 1.16074 0.78189 0.81499 0.83963 1.90895 1.55675 1.78728 1.26258 1.44940 1.73289 1.06180 1.13810 1.19731 1.01768 0.77873 0.93464 1.20863 0.93553 1.04479 0.99255 1.21880 1.00129 0.92354 0.92414 1.22538 0.98513 1.00306 0.98027 1.23169 0.88491 0.94062 0.97849 1.67273 1.40479 1.11591 1.06373 1.19222 0.86202 0.91721 0.89380 1.84771 1.51787 1.43504 1.50185 1.22181 0.97898 0.98514 0.97774 1.20965 0.97355 0.85937 0.93863 0.93992 0.98630 0.91811 0.90480 0.91312 0.92413 0.75675 0.75985 0.91443 0.90431 0.82003 0.80802 0.79639 0.72412 0.91832 0.92363 0.97388 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.51 11.19 21.65 0.24 -55.27 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 44.90 29.59 68.60 2.03 46.93 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.26 -14.65 9.58 84.03 0.81 -13.85 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.61 -31.32 2.99 -699.11 -2.09 -33.42 16 10 C 0.18 8.66 5.30 86.36 0.46 9.12 16 11 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 12 C 0.18 6.39 2.42 45.02 0.11 6.50 16 13 N -0.73 -20.12 5.08 -457.69 -2.33 -22.44 16 14 C 0.70 20.56 8.53 179.05 1.53 22.09 16 15 O -0.63 -24.20 16.01 -3.96 -0.06 -24.26 16 16 N -0.73 -15.12 5.55 -482.30 -2.68 -17.79 16 17 C 0.20 3.50 5.43 85.63 0.47 3.96 16 18 C -0.18 -2.52 5.28 -19.67 -0.10 -2.63 16 19 C -0.04 -0.39 9.80 22.45 0.22 -0.17 16 20 C -0.17 -1.20 10.11 22.36 0.23 -0.97 16 21 C 0.12 1.26 11.18 84.64 0.95 2.20 16 22 N -0.54 -9.38 10.39 -308.94 -3.21 -12.59 16 23 C 0.31 5.37 7.72 84.78 0.65 6.02 16 24 O -0.49 -8.61 12.91 -89.93 -1.16 -9.77 16 25 C -0.12 -4.59 5.65 30.67 0.17 -4.42 16 26 C 0.15 6.45 6.52 86.36 0.56 7.01 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.06 3.43 6.07 -2.38 -0.01 3.42 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.34 7.58 -2.39 -0.02 2.33 16 33 H 0.41 8.75 8.62 -92.71 -0.80 7.96 16 34 H 0.40 6.97 8.48 -92.71 -0.79 6.18 16 35 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 36 H 0.08 1.37 8.00 -2.39 -0.02 1.35 16 37 H 0.16 0.87 8.04 -2.91 -0.02 0.84 16 38 H 0.17 0.04 8.06 -2.91 -0.02 0.02 16 39 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.42 3.90 9.06 -74.05 -0.67 3.23 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 Total: -1.00 -76.83 365.97 -3.83 -80.66 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -1.21 Total: 19.96 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: 6.63 Total: 28.00 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -10.06 Total: -141.51 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.22 Total: -34.03 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.83 -3.83 -80.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311896794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.314 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds