Wall clock time and date at job start Tue Mar 31 2020 12:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48502 * 109.47080 * 272.94820 * 3 2 1 5 5 H 1.48494 * 109.47007 * 32.94559 * 3 2 1 6 6 H 1.48503 * 109.47144 * 152.94606 * 3 2 1 7 7 C 1.38821 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00251 * 339.34289 * 7 2 1 9 9 N 1.36936 * 119.99916 * 159.34210 * 7 2 1 10 10 C 1.46923 * 120.63028 * 332.62906 * 9 7 2 11 11 C 1.53189 * 108.77802 * 233.58497 * 10 9 7 12 12 C 1.53040 * 109.31553 * 305.36998 * 11 10 9 13 13 N 1.46495 * 109.46152 * 181.38632 * 12 11 10 14 14 C 1.34774 * 119.99884 * 154.97152 * 13 12 11 15 15 O 1.21591 * 120.00348 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.41594 * 120.00450 * 180.02562 * 16 14 13 18 18 C 1.42899 * 114.00276 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.46908 * 179.97438 * 18 17 16 20 20 C 1.38678 * 120.41867 * 270.24956 * 19 18 17 21 21 C 1.38625 * 118.41980 * 180.24370 * 20 19 18 22 22 C 1.38226 * 119.16144 * 359.75421 * 21 20 19 23 23 N 1.31852 * 120.76432 * 359.97438 * 22 21 20 24 24 C 1.31880 * 121.72681 * 0.02562 * 23 22 21 25 25 C 1.53043 * 109.52751 * 61.36466 * 12 11 10 26 26 C 1.46921 * 120.62966 * 152.60745 * 9 7 2 27 27 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.58883 * 113.79925 * 10 9 7 29 29 H 1.09004 * 109.70437 * 353.44432 * 10 9 7 30 30 H 1.08997 * 109.50285 * 185.41099 * 11 10 9 31 31 H 1.09005 * 109.52123 * 65.33529 * 11 10 9 32 32 H 1.09007 * 109.45485 * 301.35749 * 12 11 10 33 33 H 0.96999 * 119.99839 * 334.96415 * 13 12 11 34 34 H 0.96999 * 119.99723 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47371 * 60.00126 * 18 17 16 36 36 H 1.08997 * 109.46959 * 299.99736 * 18 17 16 37 37 H 1.08000 * 120.78649 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.42108 * 179.72997 * 21 20 19 39 39 H 1.08000 * 119.61964 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.61946 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.49473 * 58.58633 * 25 12 11 42 42 H 1.08998 * 109.49829 * 178.68034 * 25 12 11 43 43 H 1.09004 * 109.58536 * 246.20036 * 26 9 7 44 44 H 1.08996 * 109.58741 * 6.48376 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6368 7 6 2.0102 -1.2023 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3135 -1.2402 -0.4189 10 6 3.8172 -0.2585 -1.3891 11 6 4.4621 -1.0078 -2.5593 12 6 5.5288 -1.9644 -2.0216 13 7 6.1706 -2.6586 -3.1407 14 6 7.4212 -3.1425 -3.0054 15 8 8.0169 -3.0025 -1.9548 16 7 8.0115 -3.7816 -4.0348 17 8 9.3251 -4.2905 -3.8926 18 6 9.8255 -4.9428 -5.0615 19 6 11.2231 -5.4417 -4.7988 20 6 12.3184 -4.6327 -5.0615 21 6 13.5854 -5.1354 -4.8094 22 6 13.7139 -6.4152 -4.3032 23 7 12.6494 -7.1544 -4.0603 24 6 11.4291 -6.7090 -4.2880 25 6 4.8748 -2.9901 -1.0929 26 6 4.2349 -2.2632 0.0942 27 1 -0.4850 0.8401 0.0004 28 1 4.5597 0.3803 -0.9107 29 1 2.9922 0.3519 -1.7563 30 1 4.9245 -0.2922 -3.2391 31 1 3.6997 -1.5757 -3.0926 32 1 6.2779 -1.3986 -1.4676 33 1 5.6954 -2.7700 -3.9789 34 1 7.5360 -3.8936 -4.8729 35 1 9.8420 -4.2374 -5.8923 36 1 9.1799 -5.7845 -5.3123 37 1 12.1875 -3.6364 -5.4573 38 1 14.4611 -4.5348 -5.0062 39 1 14.6975 -6.8140 -4.1036 40 1 10.5812 -7.3438 -4.0770 41 1 4.1082 -3.5392 -1.6397 42 1 5.6311 -3.6854 -0.7287 43 1 5.0115 -1.7879 0.6936 44 1 3.6844 -2.9759 0.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319975473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:33 Heat of formation + Delta-G solvation = 47.773412 kcal Electronic energy + Delta-G solvation = -25946.854940 eV Core-core repulsion = 22095.729097 eV Total energy + Delta-G solvation = -3851.125842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.69362 -39.97526 -38.13366 -37.23780 -34.53381 -33.78091 -32.66357 -32.20380 -31.33849 -30.41271 -29.60451 -26.82773 -24.88445 -24.09270 -22.96148 -22.63346 -22.05588 -20.99025 -19.71602 -18.78709 -18.13386 -17.57532 -17.07865 -16.74465 -15.88071 -15.80954 -15.66125 -15.02131 -14.58469 -14.44537 -14.29004 -14.14637 -13.99064 -13.78156 -13.57826 -13.23881 -13.10952 -12.92066 -12.40480 -12.22260 -11.97981 -11.79191 -11.51201 -10.98992 -10.81792 -10.55186 -10.37591 -10.28312 -10.25305 -10.06063 -9.94564 -9.77388 -9.61732 -9.47077 -9.18168 -8.75501 -8.63456 -6.99054 -5.95023 -3.30650 0.42358 0.76402 1.51380 3.22275 3.27611 3.30958 3.49465 3.52994 3.74215 3.96390 4.19975 4.23199 4.31814 4.43430 4.48300 4.52870 4.77456 4.81140 4.95952 5.06597 5.14189 5.24633 5.33743 5.40071 5.57425 5.66820 5.67858 5.82866 6.04110 6.07254 6.13923 6.15082 6.27494 6.41354 6.51190 6.57058 6.65494 6.65819 6.69846 6.81465 6.97435 7.46025 7.90616 7.96156 8.33028 8.61473 8.93955 9.71869 10.09508 11.20912 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.002011 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.899147 B =13920.910676 C =14080.875812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.172 3.828 13 N -0.730 5.730 14 C 0.719 3.281 15 O -0.569 6.569 16 N -0.620 5.620 17 O -0.123 6.123 18 C 0.079 3.921 19 C -0.144 4.144 20 C -0.049 4.049 21 C -0.176 4.176 22 C 0.108 3.892 23 N -0.486 5.486 24 C 0.127 3.873 25 C -0.143 4.143 26 C 0.150 3.850 27 H 0.262 0.738 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.394 0.606 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.236 -10.203 -16.457 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.068 3.932 13 N -0.387 5.387 14 C 0.419 3.581 15 O -0.444 6.444 16 N -0.325 5.325 17 O -0.126 6.126 18 C 0.001 3.999 19 C -0.147 4.147 20 C -0.075 4.075 21 C -0.196 4.196 22 C -0.048 4.048 23 N -0.195 5.195 24 C -0.030 4.030 25 C -0.183 4.183 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.227 0.773 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.880 -10.818 -14.903 30.156 hybrid contribution -0.024 1.617 -1.529 2.226 sum 23.855 -9.200 -16.432 30.393 Atomic orbital electron populations 1.69838 1.05726 1.26532 1.53044 1.25294 0.95245 0.97575 0.99564 0.86975 0.80178 0.84685 0.76994 1.21655 1.23132 1.19431 1.18934 0.84916 0.94786 1.40029 0.89620 1.44413 1.08727 1.33317 1.46517 1.21312 0.97306 0.92048 0.89037 1.22374 0.97388 0.98358 0.99882 1.20941 0.93923 0.92604 0.85708 1.45330 1.13500 1.61845 1.18066 1.15448 0.81505 0.78373 0.82726 1.90963 1.64150 1.62485 1.26819 1.46229 1.06892 1.63008 1.16399 1.90679 1.13583 1.75848 1.32498 1.21648 0.91698 0.97326 0.89260 1.20351 0.94049 0.96354 1.03946 1.21578 0.91977 0.99188 0.94739 1.22193 0.98244 0.97609 1.01528 1.22921 0.97875 0.90847 0.93206 1.67784 0.99013 1.36778 1.15885 1.22777 0.95047 0.93122 0.92049 1.22424 0.99454 0.98116 0.98351 1.20909 0.92337 0.91340 0.93035 0.92788 0.95389 0.90454 0.92155 0.91058 0.89689 0.77308 0.75884 0.90918 0.90670 0.84405 0.84277 0.82376 0.82367 0.91803 0.92052 0.95579 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 2 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 4 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 7 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.18 2.77 -172.32 -0.48 -14.66 16 10 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.17 2.73 2.42 -67.89 -0.16 2.56 16 13 N -0.73 -9.20 5.08 -58.63 -0.30 -9.50 16 14 C 0.72 10.49 8.68 -86.92 -0.75 9.73 16 15 O -0.57 -11.26 16.41 -12.86 -0.21 -11.47 16 16 N -0.62 -6.57 6.39 27.63 0.18 -6.40 16 17 O -0.12 -1.43 11.09 -29.61 -0.33 -1.76 16 18 C 0.08 0.54 6.38 36.01 0.23 0.77 16 19 C -0.14 -1.12 5.53 -104.48 -0.58 -1.70 16 20 C -0.05 -0.33 9.86 -39.28 -0.39 -0.72 16 21 C -0.18 -1.07 10.11 -39.44 -0.40 -1.47 16 22 C 0.11 0.78 11.18 -17.55 -0.20 0.58 16 23 N -0.49 -4.63 10.36 -13.25 -0.14 -4.76 16 24 C 0.13 1.09 10.86 -17.55 -0.19 0.90 16 25 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 26 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 29 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 33 H 0.39 3.58 8.62 -40.82 -0.35 3.23 16 34 H 0.40 2.49 8.56 -40.82 -0.35 2.14 16 35 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 36 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 362.73 15.07 5.47 5.47 Total: -1.00 -36.77 362.73 -8.56 -45.33 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.37 Total: 1.95 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.02 Total: 4.60 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.04 Total: -62.08 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.54 Total: -13.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.77 -8.56 -45.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319975473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.100 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds