Wall clock time and date at job start Tue Mar 31 2020 12:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00296 * 2 1 4 4 H 1.48502 * 109.47080 * 272.94820 * 3 2 1 5 5 H 1.48494 * 109.47007 * 32.94559 * 3 2 1 6 6 H 1.48503 * 109.47144 * 152.94606 * 3 2 1 7 7 C 1.38821 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00251 * 339.34289 * 7 2 1 9 9 N 1.36936 * 119.99916 * 159.34210 * 7 2 1 10 10 C 1.46923 * 120.63028 * 332.62906 * 9 7 2 11 11 C 1.53189 * 108.77802 * 233.58497 * 10 9 7 12 12 C 1.53040 * 109.31553 * 305.36998 * 11 10 9 13 13 N 1.46495 * 109.46152 * 181.38632 * 12 11 10 14 14 C 1.34774 * 119.99884 * 154.97152 * 13 12 11 15 15 O 1.21591 * 120.00348 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99999 * 179.97438 * 14 13 12 17 17 O 1.41594 * 120.00450 * 180.02562 * 16 14 13 18 18 C 1.42899 * 114.00276 * 180.02562 * 17 16 14 19 19 C 1.50705 * 109.46908 * 179.97438 * 18 17 16 20 20 C 1.38678 * 120.41867 * 270.24956 * 19 18 17 21 21 C 1.38625 * 118.41980 * 180.24370 * 20 19 18 22 22 C 1.38226 * 119.16144 * 359.75421 * 21 20 19 23 23 N 1.31852 * 120.76432 * 359.97438 * 22 21 20 24 24 C 1.31880 * 121.72681 * 0.02562 * 23 22 21 25 25 C 1.53043 * 109.52751 * 61.36466 * 12 11 10 26 26 C 1.46921 * 120.62966 * 152.60745 * 9 7 2 27 27 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.58883 * 113.79925 * 10 9 7 29 29 H 1.09004 * 109.70437 * 353.44432 * 10 9 7 30 30 H 1.08997 * 109.50285 * 185.41099 * 11 10 9 31 31 H 1.09005 * 109.52123 * 65.33529 * 11 10 9 32 32 H 1.09007 * 109.45485 * 301.35749 * 12 11 10 33 33 H 0.96999 * 119.99839 * 334.96415 * 13 12 11 34 34 H 0.96999 * 119.99723 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47371 * 60.00126 * 18 17 16 36 36 H 1.08997 * 109.46959 * 299.99736 * 18 17 16 37 37 H 1.08000 * 120.78649 * 359.97438 * 20 19 18 38 38 H 1.07997 * 120.42108 * 179.72997 * 21 20 19 39 39 H 1.08000 * 119.61964 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.61946 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.49473 * 58.58633 * 25 12 11 42 42 H 1.08998 * 109.49829 * 178.68034 * 25 12 11 43 43 H 1.09004 * 109.58536 * 246.20036 * 26 9 7 44 44 H 1.08996 * 109.58741 * 6.48376 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4354 2.0823 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5776 1.4228 0.6368 7 6 2.0102 -1.2023 -0.0005 8 1 1.5223 -2.1076 0.3290 9 7 3.3135 -1.2402 -0.4189 10 6 3.8172 -0.2585 -1.3891 11 6 4.4621 -1.0078 -2.5593 12 6 5.5288 -1.9644 -2.0216 13 7 6.1706 -2.6586 -3.1407 14 6 7.4212 -3.1425 -3.0054 15 8 8.0169 -3.0025 -1.9548 16 7 8.0115 -3.7816 -4.0348 17 8 9.3251 -4.2905 -3.8926 18 6 9.8255 -4.9428 -5.0615 19 6 11.2231 -5.4417 -4.7988 20 6 12.3184 -4.6327 -5.0615 21 6 13.5854 -5.1354 -4.8094 22 6 13.7139 -6.4152 -4.3032 23 7 12.6494 -7.1544 -4.0603 24 6 11.4291 -6.7090 -4.2880 25 6 4.8748 -2.9901 -1.0929 26 6 4.2349 -2.2632 0.0942 27 1 -0.4850 0.8401 0.0004 28 1 4.5597 0.3803 -0.9107 29 1 2.9922 0.3519 -1.7563 30 1 4.9245 -0.2922 -3.2391 31 1 3.6997 -1.5757 -3.0926 32 1 6.2779 -1.3986 -1.4676 33 1 5.6954 -2.7700 -3.9789 34 1 7.5360 -3.8936 -4.8729 35 1 9.8420 -4.2374 -5.8923 36 1 9.1799 -5.7845 -5.3123 37 1 12.1875 -3.6364 -5.4573 38 1 14.4611 -4.5348 -5.0062 39 1 14.6975 -6.8140 -4.1036 40 1 10.5812 -7.3438 -4.0770 41 1 4.1082 -3.5392 -1.6397 42 1 5.6311 -3.6854 -0.7287 43 1 5.0115 -1.7879 0.6936 44 1 3.6844 -2.9759 0.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319975473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:32 Heat of formation + Delta-G solvation = 20.733842 kcal Electronic energy + Delta-G solvation = -25948.027463 eV Core-core repulsion = 22095.729097 eV Total energy + Delta-G solvation = -3852.298366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27131 -41.07252 -39.38602 -38.31556 -36.01453 -34.58966 -34.02424 -33.11743 -32.46181 -31.94339 -30.98360 -27.44731 -26.63700 -24.61396 -24.53168 -23.61445 -23.17796 -22.16712 -21.21123 -19.75597 -19.22596 -18.53715 -18.06876 -17.63618 -17.38525 -16.67492 -16.51045 -16.37559 -15.92674 -15.54932 -15.45577 -15.29098 -14.97758 -14.75832 -14.65262 -14.47983 -14.20990 -14.07255 -13.87823 -13.73867 -13.44947 -12.72757 -12.56937 -12.52876 -12.26328 -12.17290 -11.98951 -11.76956 -11.53792 -11.46634 -11.29433 -10.89997 -10.69354 -10.50571 -10.27343 -10.14050 -9.76778 -8.94364 -8.13742 -5.45910 -0.14486 0.24887 0.68592 1.31504 1.45760 1.54319 2.10496 2.43863 2.64339 2.88065 3.08658 3.35182 3.44688 3.69610 3.76192 3.76968 3.80207 3.96575 4.00973 4.01296 4.26196 4.31415 4.35445 4.40128 4.51872 4.60698 4.65928 4.69817 4.77876 4.87957 4.95110 5.06553 5.09568 5.10442 5.18497 5.20474 5.39018 5.51648 5.61600 5.67291 5.89258 5.96558 6.15345 6.92660 6.93181 7.01842 7.58287 7.63821 8.04269 9.05973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.038993 B = 0.002011 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.899147 B =13920.910676 C =14080.875812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.313 1.313 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.120 3.880 11 C -0.125 4.125 12 C 0.182 3.818 13 N -0.712 5.712 14 C 0.718 3.282 15 O -0.625 6.625 16 N -0.599 5.599 17 O -0.154 6.154 18 C 0.077 3.923 19 C -0.154 4.154 20 C -0.058 4.058 21 C -0.173 4.173 22 C 0.095 3.905 23 N -0.519 5.519 24 C 0.108 3.892 25 C -0.130 4.130 26 C 0.146 3.854 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.425 0.575 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.164 0.836 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.449 -9.665 -19.032 33.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.242 1.242 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.070 0.930 9 N -0.343 5.343 10 C -0.006 4.006 11 C -0.165 4.165 12 C 0.077 3.923 13 N -0.371 5.371 14 C 0.418 3.582 15 O -0.505 6.505 16 N -0.305 5.305 17 O -0.159 6.159 18 C 0.001 3.999 19 C -0.157 4.157 20 C -0.084 4.084 21 C -0.193 4.193 22 C -0.061 4.061 23 N -0.228 5.228 24 C -0.049 4.049 25 C -0.170 4.170 26 C 0.021 3.979 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.182 0.818 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 26.120 -10.316 -17.587 33.136 hybrid contribution -0.614 1.317 -0.746 1.633 sum 25.506 -8.999 -18.334 32.675 Atomic orbital electron populations 1.69961 1.07353 1.27190 1.55674 1.25890 0.95830 1.00827 1.00345 0.85957 0.78518 0.80299 0.77943 1.19243 1.24208 1.19095 1.18858 0.86558 0.93587 1.38672 0.92958 1.44514 1.07728 1.34460 1.47614 1.21394 0.96949 0.92057 0.90151 1.22168 0.97417 0.98697 0.98222 1.20583 0.93339 0.92117 0.86281 1.44857 1.13048 1.61099 1.18098 1.15547 0.81598 0.78365 0.82651 1.90934 1.65575 1.64638 1.29317 1.45814 1.06907 1.61498 1.16313 1.90669 1.13541 1.76371 1.35283 1.21886 0.91311 0.98361 0.88389 1.20501 0.94898 0.96204 1.04133 1.21940 0.92060 0.99925 0.94439 1.22530 0.99116 0.97335 1.00278 1.23391 0.98282 0.91440 0.93024 1.67764 0.99861 1.38078 1.17082 1.22988 0.95194 0.93985 0.92734 1.22237 0.99279 0.98068 0.97425 1.21009 0.91774 0.90729 0.94410 0.92953 0.95067 0.92170 0.88835 0.90391 0.91367 0.74782 0.73127 0.88414 0.88737 0.82531 0.81478 0.80255 0.81839 0.91458 0.91986 0.95434 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.34 13.97 21.65 0.30 -59.04 16 2 C -0.03 -1.97 5.23 84.86 0.44 -1.53 16 3 Si 0.94 45.84 24.34 68.60 1.67 47.51 16 4 H -0.27 -11.85 6.62 99.48 0.66 -11.19 16 5 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 6 H -0.27 -12.63 6.63 99.48 0.66 -11.97 16 7 C -0.25 -13.86 10.04 84.04 0.84 -13.02 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.62 -28.64 2.77 -699.09 -1.94 -30.57 16 10 C 0.12 4.81 4.20 86.36 0.36 5.17 16 11 C -0.13 -3.67 5.55 30.67 0.17 -3.50 16 12 C 0.18 5.32 2.42 45.02 0.11 5.43 16 13 N -0.71 -15.68 5.08 -457.68 -2.33 -18.01 16 14 C 0.72 19.27 8.68 179.05 1.55 20.82 16 15 O -0.63 -24.09 16.41 13.35 0.22 -23.87 16 16 N -0.60 -10.98 6.39 -184.74 -1.18 -12.16 16 17 O -0.15 -3.28 11.09 -21.42 -0.24 -3.52 16 18 C 0.08 0.86 6.38 71.24 0.45 1.32 16 19 C -0.15 -2.16 5.53 -19.77 -0.11 -2.27 16 20 C -0.06 -0.67 9.86 22.47 0.22 -0.45 16 21 C -0.17 -1.76 10.11 22.36 0.23 -1.53 16 22 C 0.09 1.26 11.18 84.69 0.95 2.20 16 23 N -0.52 -9.69 10.36 -195.84 -2.03 -11.72 16 24 C 0.11 1.80 10.86 84.67 0.92 2.72 16 25 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 26 C 0.15 5.83 6.52 86.36 0.56 6.39 16 27 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.03 1.25 7.07 -2.38 -0.02 1.23 16 29 H 0.06 2.63 4.50 -2.39 -0.01 2.62 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.07 2.31 7.58 -2.38 -0.02 2.29 16 33 H 0.42 5.77 8.62 -92.71 -0.80 4.97 16 34 H 0.43 3.62 8.56 -92.71 -0.79 2.82 16 35 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16 36 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 37 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 38 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 Total: -1.00 -82.26 362.73 0.70 -81.55 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -0.66 Total: 12.17 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.88 Total: 17.66 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.17 Total: -131.50 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.02 Total: -27.39 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -82.26 0.70 -81.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319975473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.288 kcal (2) G-P(sol) polarization free energy of solvation -82.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds