Wall clock time and date at job start Tue Mar 31 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48508 * 109.46698 * 270.00148 * 3 2 1 5 5 H 1.48492 * 109.46976 * 30.00137 * 3 2 1 6 6 H 1.48497 * 109.47101 * 150.00502 * 3 2 1 7 7 C 1.37879 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00233 * 169.99364 * 7 2 1 9 9 C 1.50704 * 119.99773 * 349.98771 * 7 2 1 10 10 C 1.52996 * 115.54961 * 325.15661 * 9 7 2 11 11 N 1.46502 * 109.47289 * 306.40952 * 10 9 7 12 12 C 1.34778 * 120.00026 * 183.79908 * 11 10 9 13 13 O 1.21344 * 120.00161 * 354.28497 * 12 11 10 14 14 C 1.49450 * 119.99840 * 174.28731 * 12 11 10 15 15 O 1.21356 * 120.00221 * 4.97452 * 14 12 11 16 16 N 1.34777 * 119.99896 * 184.97173 * 14 12 11 17 17 C 1.46503 * 119.99979 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46913 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47036 * 180.02562 * 18 17 16 20 20 N 1.46492 * 109.47454 * 179.97438 * 19 18 17 21 21 C 1.36883 * 126.39878 * 89.99623 * 20 19 18 22 22 C 1.34672 * 106.82213 * 180.02562 * 21 20 19 23 23 N 1.34134 * 108.01562 * 0.02562 * 22 21 20 24 24 C 1.30501 * 109.25901 * 359.72491 * 23 22 21 25 25 C 1.53004 * 117.49526 * 110.82631 * 9 7 2 26 26 C 1.52995 * 117.49528 * 179.48197 * 9 7 2 27 27 H 0.97002 * 120.00422 * 5.03257 * 1 2 3 28 28 H 1.09008 * 109.46911 * 186.41574 * 10 9 7 29 29 H 1.08993 * 109.47331 * 66.41523 * 10 9 7 30 30 H 0.96996 * 119.99827 * 4.06999 * 11 10 9 31 31 H 0.96994 * 120.00015 * 359.97438 * 16 14 12 32 32 H 1.08997 * 109.47039 * 300.00130 * 17 16 14 33 33 H 1.09005 * 109.46980 * 60.00046 * 17 16 14 34 34 H 1.08997 * 109.47337 * 299.99903 * 18 17 16 35 35 H 1.08996 * 109.47460 * 60.00016 * 18 17 16 36 36 H 1.09004 * 109.47215 * 300.00359 * 19 18 17 37 37 H 1.09005 * 109.46961 * 59.99937 * 19 18 17 38 38 H 1.08005 * 126.58965 * 359.96780 * 21 20 19 39 39 H 1.07993 * 125.99377 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.65578 * 180.29217 * 24 23 22 41 41 H 1.08998 * 117.49480 * 215.00317 * 25 9 7 42 42 H 1.08994 * 117.49647 * 0.02562 * 25 9 7 43 43 H 1.08997 * 117.50195 * 359.97438 * 26 9 7 44 44 H 1.09009 * 117.49602 * 144.97162 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0722 -1.2011 -0.1630 9 6 1.2683 -2.4893 0.2258 10 6 0.0910 -2.4176 1.2003 11 7 0.5408 -1.8363 2.4676 12 6 -0.3119 -1.7450 3.5074 13 8 -1.4783 -2.0473 3.3639 14 6 0.1792 -1.2713 4.8371 15 8 1.3226 -0.8835 4.9586 16 7 -0.6479 -1.2749 5.9012 17 6 -0.1664 -0.8112 7.2048 18 6 -1.2945 -0.9184 8.2327 19 6 -0.7918 -0.4335 9.5940 20 7 -1.8721 -0.5356 10.5782 21 6 -2.1498 -1.6169 11.3702 22 6 -3.2175 -1.2858 12.1214 23 7 -3.5820 -0.0365 11.7964 24 6 -2.7773 0.4212 10.8767 25 6 1.1469 -3.4493 -0.9594 26 6 2.0877 -3.7812 0.2015 27 1 -0.4851 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3778 29 1 -0.6960 -1.7954 0.7742 30 1 1.4511 -1.5135 2.5571 31 1 -1.5620 -1.5846 5.8039 32 1 0.6739 -1.4285 7.5223 33 1 0.1553 0.2272 7.1248 34 1 -2.1351 -0.3014 7.9154 35 1 -1.6159 -1.9569 8.3126 36 1 0.0490 -1.0502 9.9116 37 1 -0.4708 0.6051 9.5139 38 1 -1.6160 -2.5556 11.3885 39 1 -3.6961 -1.9157 12.8565 40 1 -2.8281 1.4018 10.4270 41 1 0.2282 -4.0297 -1.0449 42 1 1.5999 -3.1441 -1.9026 43 1 3.1591 -3.6943 0.0215 44 1 1.7882 -4.5799 0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321528275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:13 Heat of formation + Delta-G solvation = 15.804715 kcal Electronic energy + Delta-G solvation = -25826.935277 eV Core-core repulsion = 21974.423168 eV Total energy + Delta-G solvation = -3852.512109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.33525 -40.17444 -38.19839 -36.73458 -36.51961 -34.48473 -33.14865 -32.23752 -31.21948 -29.71568 -27.23932 -26.17374 -25.49135 -23.35537 -22.14497 -21.65279 -21.29212 -21.19923 -19.79657 -19.41662 -18.08785 -17.80931 -16.46412 -16.27354 -16.24615 -15.51743 -15.27779 -15.15416 -14.79433 -14.59476 -14.45710 -14.18154 -13.84694 -13.69570 -13.53192 -13.11461 -12.96994 -12.72246 -12.68319 -12.19251 -11.86088 -11.60157 -11.53824 -11.23772 -11.06902 -10.84606 -10.56141 -10.33118 -10.28996 -10.00486 -9.69806 -9.29410 -9.24690 -9.06124 -8.91082 -8.84252 -8.39006 -8.05288 -6.13987 -4.23920 1.71388 1.87643 2.33157 2.76978 2.89047 3.20075 3.29293 3.32607 3.72132 4.05897 4.08877 4.26470 4.31007 4.42216 4.46065 4.61973 4.73577 4.80454 4.84867 5.12493 5.13306 5.21161 5.34779 5.43201 5.47315 5.57787 5.91713 5.91959 6.18063 6.20599 6.41361 6.45091 6.49496 6.60556 6.79056 6.83012 6.96209 7.11393 7.20341 7.32445 7.45688 7.76541 7.83180 7.90727 8.23013 8.29274 8.72277 8.75964 9.37687 10.82997 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002268 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.844977 B =12340.930398 C =13012.830324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.158 3.842 11 N -0.649 5.649 12 C 0.493 3.507 13 O -0.545 6.545 14 C 0.509 3.491 15 O -0.519 6.519 16 N -0.711 5.711 17 C 0.122 3.878 18 C -0.149 4.149 19 C 0.108 3.892 20 N -0.459 5.459 21 C -0.056 4.056 22 C -0.032 4.032 23 N -0.497 5.497 24 C 0.182 3.818 25 C -0.193 4.193 26 C -0.211 4.211 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.117 0.883 30 H 0.413 0.587 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.204 0.796 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -2.198 18.564 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.033 3.967 10 C 0.035 3.965 11 N -0.297 5.297 12 C 0.271 3.729 13 O -0.425 6.425 14 C 0.291 3.709 15 O -0.394 6.394 16 N -0.366 5.366 17 C -0.002 4.002 18 C -0.188 4.188 19 C -0.015 4.015 20 N -0.141 5.141 21 C -0.189 4.189 22 C -0.180 4.180 23 N -0.215 5.215 24 C -0.100 4.100 25 C -0.232 4.232 26 C -0.248 4.248 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.250 0.750 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.191 0.809 39 H 0.186 0.814 40 H 0.221 0.779 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.676 -1.572 18.834 19.088 hybrid contribution 1.148 0.381 -0.536 1.323 sum -1.528 -1.190 18.299 18.401 Atomic orbital electron populations 1.69817 1.05918 1.27118 1.47771 1.24991 0.94828 0.99228 0.93993 0.86573 0.80141 0.83098 0.78283 1.20545 1.21029 1.19480 1.20494 0.93987 0.88718 1.50377 0.91811 1.19178 0.94044 0.89345 0.94093 1.21222 0.98840 0.95472 0.80926 1.45713 1.15424 1.57243 1.11329 1.19730 0.86571 0.81292 0.85259 1.90692 1.16567 1.50869 1.84391 1.20659 0.85560 0.78725 0.85971 1.90750 1.18134 1.45372 1.85137 1.45663 1.16467 1.66114 1.08324 1.21230 0.96259 1.01039 0.81700 1.22169 0.99389 1.03734 0.93471 1.21793 0.88406 1.04453 0.86843 1.45594 1.25322 1.13066 1.30161 1.22779 1.03199 0.94102 0.98796 1.22331 0.97875 0.94207 1.03571 1.70308 1.26181 1.10955 1.14096 1.25064 0.89428 0.96584 0.98958 1.22928 0.99568 1.06400 0.94289 1.22978 0.97087 1.01773 1.02986 0.92531 0.94885 0.86565 0.75007 0.75112 0.90751 0.90682 0.89977 0.90085 0.88418 0.88166 0.80917 0.81432 0.77931 0.91413 0.90043 0.90435 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.94 10.72 55.43 0.59 -22.35 16 2 C 0.07 1.89 5.13 -17.82 -0.09 1.80 16 3 Si 0.89 20.19 29.55 -169.99 -5.02 15.16 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.50 -12.56 8.27 -34.44 -0.28 -12.84 16 8 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 9 C 0.03 0.79 2.00 -155.66 -0.31 0.48 16 10 C 0.16 3.59 4.73 -4.04 -0.02 3.57 16 11 N -0.65 -13.88 5.27 -60.73 -0.32 -14.20 16 12 C 0.49 9.80 7.88 -11.58 -0.09 9.71 16 13 O -0.55 -11.66 16.50 5.50 0.09 -11.57 16 14 C 0.51 8.58 7.89 -11.58 -0.09 8.49 16 15 O -0.52 -9.75 16.49 5.49 0.09 -9.66 16 16 N -0.71 -8.68 5.55 -60.73 -0.34 -9.01 16 17 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 18 C -0.15 -0.86 5.65 -26.73 -0.15 -1.01 16 19 C 0.11 0.50 6.15 -4.04 -0.02 0.47 16 20 N -0.46 -3.23 2.75 -118.57 -0.33 -3.56 16 21 C -0.06 -0.41 11.58 -16.56 -0.19 -0.61 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 23 N -0.50 -5.53 11.25 -14.66 -0.16 -5.69 16 24 C 0.18 1.54 12.56 -90.37 -1.14 0.40 16 25 C -0.19 -4.11 9.96 -26.69 -0.27 -4.38 16 26 C -0.21 -4.29 9.92 -26.70 -0.26 -4.55 16 27 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 28 H 0.03 0.72 8.08 -51.92 -0.42 0.30 16 29 H 0.12 3.00 6.03 -51.93 -0.31 2.69 16 30 H 0.41 9.00 7.40 -40.82 -0.30 8.70 16 31 H 0.41 4.66 7.95 -40.82 -0.32 4.34 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -31.47 379.89 -9.23 -40.70 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.40 Total: 12.43 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.16 Total: 2.03 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.55 Total: -54.81 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.18 Total: -21.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.47 -9.23 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321528275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.506 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds