Wall clock time and date at job start Tue Mar 31 2020 12:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48508 * 109.46698 * 270.00148 * 3 2 1 5 5 H 1.48492 * 109.46976 * 30.00137 * 3 2 1 6 6 H 1.48497 * 109.47101 * 150.00502 * 3 2 1 7 7 C 1.37879 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00233 * 169.99364 * 7 2 1 9 9 C 1.50704 * 119.99773 * 349.98771 * 7 2 1 10 10 C 1.52996 * 115.54961 * 325.15661 * 9 7 2 11 11 N 1.46502 * 109.47289 * 306.40952 * 10 9 7 12 12 C 1.34778 * 120.00026 * 183.79908 * 11 10 9 13 13 O 1.21344 * 120.00161 * 354.28497 * 12 11 10 14 14 C 1.49450 * 119.99840 * 174.28731 * 12 11 10 15 15 O 1.21356 * 120.00221 * 4.97452 * 14 12 11 16 16 N 1.34777 * 119.99896 * 184.97173 * 14 12 11 17 17 C 1.46503 * 119.99979 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46913 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47036 * 180.02562 * 18 17 16 20 20 N 1.46492 * 109.47454 * 179.97438 * 19 18 17 21 21 C 1.36883 * 126.39878 * 89.99623 * 20 19 18 22 22 C 1.34672 * 106.82213 * 180.02562 * 21 20 19 23 23 N 1.34134 * 108.01562 * 0.02562 * 22 21 20 24 24 C 1.30501 * 109.25901 * 359.72491 * 23 22 21 25 25 C 1.53004 * 117.49526 * 110.82631 * 9 7 2 26 26 C 1.52995 * 117.49528 * 179.48197 * 9 7 2 27 27 H 0.97002 * 120.00422 * 5.03257 * 1 2 3 28 28 H 1.09008 * 109.46911 * 186.41574 * 10 9 7 29 29 H 1.08993 * 109.47331 * 66.41523 * 10 9 7 30 30 H 0.96996 * 119.99827 * 4.06999 * 11 10 9 31 31 H 0.96994 * 120.00015 * 359.97438 * 16 14 12 32 32 H 1.08997 * 109.47039 * 300.00130 * 17 16 14 33 33 H 1.09005 * 109.46980 * 60.00046 * 17 16 14 34 34 H 1.08997 * 109.47337 * 299.99903 * 18 17 16 35 35 H 1.08996 * 109.47460 * 60.00016 * 18 17 16 36 36 H 1.09004 * 109.47215 * 300.00359 * 19 18 17 37 37 H 1.09005 * 109.46961 * 59.99937 * 19 18 17 38 38 H 1.08005 * 126.58965 * 359.96780 * 21 20 19 39 39 H 1.07993 * 125.99377 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.65578 * 180.29217 * 24 23 22 41 41 H 1.08998 * 117.49480 * 215.00317 * 25 9 7 42 42 H 1.08994 * 117.49647 * 0.02562 * 25 9 7 43 43 H 1.08997 * 117.50195 * 359.97438 * 26 9 7 44 44 H 1.09009 * 117.49602 * 144.97162 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0722 -1.2011 -0.1630 9 6 1.2683 -2.4893 0.2258 10 6 0.0910 -2.4176 1.2003 11 7 0.5408 -1.8363 2.4676 12 6 -0.3119 -1.7450 3.5074 13 8 -1.4783 -2.0473 3.3639 14 6 0.1792 -1.2713 4.8371 15 8 1.3226 -0.8835 4.9586 16 7 -0.6479 -1.2749 5.9012 17 6 -0.1664 -0.8112 7.2048 18 6 -1.2945 -0.9184 8.2327 19 6 -0.7918 -0.4335 9.5940 20 7 -1.8721 -0.5356 10.5782 21 6 -2.1498 -1.6169 11.3702 22 6 -3.2175 -1.2858 12.1214 23 7 -3.5820 -0.0365 11.7964 24 6 -2.7773 0.4212 10.8767 25 6 1.1469 -3.4493 -0.9594 26 6 2.0877 -3.7812 0.2015 27 1 -0.4851 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3778 29 1 -0.6960 -1.7954 0.7742 30 1 1.4511 -1.5135 2.5571 31 1 -1.5620 -1.5846 5.8039 32 1 0.6739 -1.4285 7.5223 33 1 0.1553 0.2272 7.1248 34 1 -2.1351 -0.3014 7.9154 35 1 -1.6159 -1.9569 8.3126 36 1 0.0490 -1.0502 9.9116 37 1 -0.4708 0.6051 9.5139 38 1 -1.6160 -2.5556 11.3885 39 1 -3.6961 -1.9157 12.8565 40 1 -2.8281 1.4018 10.4270 41 1 0.2282 -4.0297 -1.0449 42 1 1.5999 -3.1441 -1.9026 43 1 3.1591 -3.6943 0.0215 44 1 1.7882 -4.5799 0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321528275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:12 Heat of formation + Delta-G solvation = -4.176896 kcal Electronic energy + Delta-G solvation = -25827.801745 eV Core-core repulsion = 21974.423168 eV Total energy + Delta-G solvation = -3853.378577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89992 -41.57036 -39.67922 -38.44249 -37.32728 -35.42235 -34.68097 -34.14603 -31.97777 -30.29779 -28.66215 -27.60343 -26.95629 -24.46753 -23.03253 -22.89069 -22.23974 -21.79215 -21.25549 -21.06562 -19.55554 -18.45373 -18.01909 -17.71858 -17.20674 -16.72777 -16.43105 -16.25960 -16.16527 -16.00482 -15.48354 -15.17795 -14.98225 -14.74773 -14.59926 -14.34768 -14.08461 -13.66725 -13.55635 -13.49317 -13.38415 -12.91739 -12.79603 -12.68447 -12.67705 -12.31689 -12.05902 -12.05265 -11.44035 -11.10898 -10.92533 -10.73883 -10.64917 -10.50221 -10.33299 -10.18049 -9.81031 -9.42554 -8.05907 -6.20595 0.44218 1.13930 1.39191 1.44594 1.45267 1.52372 1.94472 2.24113 2.25256 2.39460 2.77912 3.04691 3.55537 3.69258 3.72234 3.74382 3.91834 3.95758 4.16565 4.21820 4.22043 4.41259 4.49631 4.61491 4.62674 4.70518 4.75254 4.77046 4.91696 4.97171 5.01229 5.07089 5.17520 5.27063 5.37839 5.48765 5.56349 5.59373 5.85429 5.89961 6.01806 6.31257 6.34718 6.52602 6.78143 6.85858 7.12163 7.17409 7.42307 8.88496 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020525 B = 0.002268 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.844977 B =12340.930398 C =13012.830324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.002 3.998 10 C 0.169 3.831 11 N -0.655 5.655 12 C 0.488 3.512 13 O -0.564 6.564 14 C 0.514 3.486 15 O -0.542 6.542 16 N -0.691 5.691 17 C 0.119 3.881 18 C -0.135 4.135 19 C 0.109 3.891 20 N -0.456 5.456 21 C -0.049 4.049 22 C -0.064 4.064 23 N -0.543 5.543 24 C 0.173 3.827 25 C -0.192 4.192 26 C -0.186 4.186 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.410 0.590 31 H 0.418 0.582 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.201 0.799 39 H 0.176 0.824 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -2.594 19.682 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.002 3.998 10 C 0.046 3.954 11 N -0.303 5.303 12 C 0.268 3.732 13 O -0.445 6.445 14 C 0.294 3.706 15 O -0.419 6.419 16 N -0.344 5.344 17 C -0.004 4.004 18 C -0.174 4.174 19 C -0.013 4.013 20 N -0.138 5.138 21 C -0.182 4.182 22 C -0.210 4.210 23 N -0.262 5.262 24 C -0.109 4.109 25 C -0.230 4.230 26 C -0.224 4.224 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.247 0.753 31 H 0.255 0.745 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.218 0.782 39 H 0.194 0.806 40 H 0.243 0.757 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.643 -1.979 19.979 20.144 hybrid contribution 0.793 0.454 -0.862 1.256 sum -0.850 -1.525 19.117 19.196 Atomic orbital electron populations 1.69963 1.06832 1.27157 1.49013 1.25527 0.95346 1.01524 0.94084 0.85798 0.79144 0.80179 0.78115 1.20342 1.21522 1.19083 1.20685 0.93806 0.89913 1.49916 0.92405 1.19257 0.95206 0.89800 0.95582 1.20907 0.97907 0.95060 0.81511 1.45683 1.15475 1.57708 1.11431 1.20338 0.86118 0.80430 0.86309 1.90671 1.17281 1.51506 1.85034 1.20036 0.85674 0.79196 0.85647 1.90744 1.18944 1.46964 1.85251 1.45681 1.16033 1.64157 1.08554 1.21491 0.97508 1.01275 0.80093 1.22025 0.98191 1.03843 0.93324 1.21940 0.87937 1.06022 0.85389 1.45720 1.25398 1.12565 1.30145 1.23203 1.02418 0.94881 0.97747 1.22672 0.99221 0.94230 1.04913 1.70252 1.27946 1.12226 1.15787 1.25524 0.89247 0.97617 0.98547 1.22935 1.00491 1.05712 0.93905 1.22978 0.97059 1.00221 1.02095 0.93045 0.94206 0.89853 0.75324 0.74468 0.89765 0.90280 0.90289 0.90018 0.86561 0.86429 0.78230 0.80640 0.75749 0.90169 0.90553 0.89893 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.74 10.72 21.45 0.23 -47.51 16 2 C 0.04 1.89 5.13 84.65 0.43 2.33 16 3 Si 0.94 41.44 29.55 68.60 2.03 43.47 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.51 -25.42 8.27 25.60 0.21 -25.21 16 8 H 0.06 2.91 7.83 -2.91 -0.02 2.88 16 9 C 0.00 0.10 2.00 -52.93 -0.11 0.00 16 10 C 0.17 7.74 4.73 86.38 0.41 8.15 16 11 N -0.66 -28.07 5.27 -464.42 -2.45 -30.52 16 12 C 0.49 19.29 7.88 87.27 0.69 19.98 16 13 O -0.56 -24.05 16.50 -3.23 -0.05 -24.10 16 14 C 0.51 16.74 7.89 87.27 0.69 17.43 16 15 O -0.54 -19.73 16.49 -3.27 -0.05 -19.79 16 16 N -0.69 -15.54 5.55 -464.40 -2.58 -18.11 16 17 C 0.12 1.68 5.67 86.38 0.49 2.17 16 18 C -0.14 -1.16 5.65 30.59 0.17 -0.99 16 19 C 0.11 0.63 6.15 86.38 0.53 1.16 16 20 N -0.46 -5.33 2.75 -529.05 -1.46 -6.79 16 21 C -0.05 -0.63 11.58 83.09 0.96 0.33 16 22 C -0.06 -1.13 11.87 83.52 0.99 -0.14 16 23 N -0.54 -11.89 11.25 -200.30 -2.25 -14.14 16 24 C 0.17 2.69 12.56 180.26 2.26 4.95 16 25 C -0.19 -7.96 9.96 30.62 0.30 -7.65 16 26 C -0.19 -7.23 9.92 30.62 0.30 -6.93 16 27 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 28 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 29 H 0.08 4.40 6.03 -2.39 -0.01 4.38 16 30 H 0.41 17.93 7.40 -92.71 -0.69 17.25 16 31 H 0.42 8.68 7.95 -92.71 -0.74 7.95 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 38 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.23 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -68.10 379.89 1.37 -66.73 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.40 Total: 35.19 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 8.35 Total: 15.58 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -8.50 Total: -117.07 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.11 Total: -43.89 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -68.10 1.37 -66.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321528275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.552 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds