Wall clock time and date at job start Tue Mar 31 2020 12:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99794 * 2 1 4 4 H 1.48499 * 109.46851 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.46860 * 30.00276 * 3 2 1 6 6 H 1.48506 * 109.46663 * 149.99990 * 3 2 1 7 7 C 1.37877 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47235 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99764 * 180.02562 * 11 10 9 13 13 O 1.21356 * 120.00234 * 0.02562 * 12 11 10 14 14 C 1.49452 * 120.00218 * 180.02562 * 12 11 10 15 15 O 1.21346 * 119.99680 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00218 * 179.97438 * 14 12 11 17 17 C 1.46498 * 120.00144 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47521 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47724 * 179.97438 * 18 17 16 20 20 N 1.46489 * 109.47486 * 180.02562 * 19 18 17 21 21 C 1.39001 * 120.00245 * 180.02562 * 20 19 18 22 22 C 1.39146 * 119.70404 * 359.97438 * 21 20 19 23 23 C 1.38295 * 119.09401 * 179.97438 * 22 21 20 24 24 C 1.38884 * 118.51011 * 0.02562 * 23 22 21 25 25 C 1.38022 * 119.32992 * 0.27628 * 24 23 22 26 26 N 1.31980 * 120.85123 * 359.44533 * 25 24 23 27 27 H 0.96996 * 120.00165 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46695 * 60.00431 * 9 7 2 29 29 H 1.08994 * 109.47365 * 300.00539 * 9 7 2 30 30 H 1.09002 * 109.46447 * 60.00254 * 10 9 7 31 31 H 1.08994 * 109.47519 * 300.00610 * 10 9 7 32 32 H 0.97003 * 120.00302 * 0.02562 * 11 10 9 33 33 H 0.97003 * 119.99934 * 0.02562 * 16 14 12 34 34 H 1.09007 * 109.47126 * 60.00102 * 17 16 14 35 35 H 1.08996 * 109.47888 * 300.00497 * 17 16 14 36 36 H 1.09005 * 109.47052 * 60.00408 * 18 17 16 37 37 H 1.08994 * 109.47420 * 300.00749 * 18 17 16 38 38 H 1.09005 * 109.46498 * 60.00099 * 19 18 17 39 39 H 1.08994 * 109.47308 * 300.00848 * 19 18 17 40 40 H 0.97003 * 119.99877 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.44826 * 0.02676 * 22 21 20 42 42 H 1.08000 * 120.74269 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.33299 * 179.97438 * 24 23 22 44 44 H 1.07989 * 119.57332 * 179.70393 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 7 5.4866 -2.6364 0.0002 12 6 6.1605 -3.8036 0.0006 13 8 5.5537 -4.8546 0.0015 14 6 7.6550 -3.8036 0.0000 15 8 8.2617 -2.7527 -0.0014 16 7 8.3289 -4.9708 0.0009 17 6 9.7938 -4.9708 -0.0003 18 6 10.3039 -6.4132 0.0018 19 6 11.8339 -6.4133 -0.0001 20 7 12.3223 -7.7944 0.0012 21 6 13.6889 -8.0484 0.0005 22 6 14.5876 -6.9861 -0.0022 23 6 15.9445 -7.2533 -0.0024 24 6 16.3591 -8.5788 -0.0005 25 6 15.4126 -9.5833 -0.0043 26 7 14.1238 -9.2989 0.0013 27 1 -0.4850 0.8400 -0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8745 -0.6807 -0.8904 30 1 3.6579 -3.1512 -0.8880 31 1 3.6586 -3.1494 0.8919 32 1 5.9716 -1.7964 -0.0009 33 1 7.8439 -5.8108 0.0016 34 1 10.1579 -4.4558 0.8888 35 1 10.1566 -4.4580 -0.8911 36 1 9.9399 -6.9286 -0.8871 37 1 9.9413 -6.9256 0.8928 38 1 12.1983 -5.8978 0.8885 39 1 12.1962 -5.9010 -0.8914 40 1 11.6919 -8.5317 0.0027 41 1 14.2304 -5.9669 -0.0031 42 1 16.6655 -6.4493 -0.0040 43 1 17.4116 -8.8211 -0.0010 44 1 15.7306 -10.6153 -0.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321648862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:34 Heat of formation + Delta-G solvation = -40.290399 kcal Electronic energy + Delta-G solvation = -24351.775411 eV Core-core repulsion = 20496.830835 eV Total energy + Delta-G solvation = -3854.944576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62098 -40.50261 -38.53549 -37.29036 -35.70052 -34.97795 -32.94052 -32.82060 -32.13656 -30.32496 -29.61999 -26.77491 -25.42483 -24.16439 -23.26789 -22.42505 -22.11490 -20.92273 -20.25865 -18.51074 -17.93427 -17.30655 -17.05258 -16.62547 -16.60221 -16.13426 -15.76333 -15.58411 -15.02005 -14.85346 -14.68383 -14.52706 -14.28621 -14.19818 -13.61803 -13.48459 -13.43184 -12.97412 -12.63740 -12.61790 -12.43813 -12.05477 -11.81748 -11.65336 -11.52816 -11.27407 -10.72121 -10.47083 -10.33758 -10.15635 -9.98262 -9.86208 -9.52755 -9.52122 -9.34632 -8.81671 -8.63541 -8.19144 -6.14349 -4.15280 0.87206 1.04415 1.47210 2.27675 2.69028 3.24853 3.29216 3.33006 3.34534 3.52649 3.70987 4.19679 4.29327 4.31760 4.33641 4.35842 4.47477 4.61705 4.71337 4.82650 4.90416 4.93204 4.94294 5.12690 5.18811 5.32293 5.45172 5.47700 5.59438 5.87981 5.93087 5.93507 6.07154 6.11809 6.43546 6.47020 6.53412 6.85669 7.04687 7.07877 7.15687 7.49107 7.60135 7.75178 7.77978 8.15629 8.39530 8.88809 9.45567 10.98414 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.001452 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.933823 B =19281.636924 C =19842.217978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.498 3.502 13 O -0.529 6.529 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.706 5.706 17 C 0.122 3.878 18 C -0.145 4.145 19 C 0.132 3.868 20 N -0.726 5.726 21 C 0.402 3.598 22 C -0.240 4.240 23 C -0.034 4.034 24 C -0.238 4.238 25 C 0.148 3.852 26 N -0.547 5.547 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.409 0.591 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.406 0.594 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.778 -15.574 0.007 36.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.278 3.722 13 O -0.406 6.406 14 C 0.290 3.710 15 O -0.395 6.395 16 N -0.361 5.361 17 C -0.002 4.002 18 C -0.183 4.183 19 C 0.007 3.993 20 N -0.359 5.359 21 C 0.167 3.833 22 C -0.265 4.265 23 C -0.060 4.060 24 C -0.260 4.260 25 C -0.010 4.010 26 N -0.265 5.265 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 31.923 -15.878 0.015 35.654 hybrid contribution 0.734 1.317 -0.021 1.508 sum 32.657 -14.561 -0.007 35.756 Atomic orbital electron populations 1.69893 1.06301 1.27148 1.50173 1.24977 0.94751 0.99151 0.94218 0.86772 0.80337 0.83509 0.78622 1.20150 1.21200 1.18969 1.20875 0.88429 0.94971 1.52076 0.90532 1.19825 0.98123 0.90950 0.97245 1.21728 0.74653 1.00885 1.02213 1.46213 1.09560 1.08013 1.70316 1.19933 0.87623 0.85280 0.79395 1.90753 1.69644 1.30994 1.49257 1.20434 0.89075 0.84174 0.77302 1.90759 1.70081 1.31046 1.47627 1.45683 1.07104 1.09266 1.74009 1.21264 0.79312 0.96204 1.03427 1.21954 0.94831 0.97142 1.04420 1.21236 0.93280 0.82594 1.02202 1.44425 1.02807 1.07855 1.80808 1.18353 0.85424 0.89227 0.90316 1.21437 0.93653 0.99281 1.12127 1.21351 0.95128 0.96933 0.92564 1.21838 1.01021 0.93636 1.09549 1.22405 0.86848 0.99696 0.92003 1.67156 1.18450 1.20089 1.20776 0.92480 0.95713 0.96142 0.91225 0.91191 0.75548 0.74952 0.90533 0.90529 0.89949 0.89941 0.91301 0.91303 0.75839 0.85080 0.85031 0.85174 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.53 -14.44 9.66 -34.44 -0.33 -14.77 16 8 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -11.49 5.55 -60.73 -0.34 -11.83 16 12 C 0.50 7.87 7.89 -11.59 -0.09 7.77 16 13 O -0.53 -9.36 16.48 5.49 0.09 -9.27 16 14 C 0.51 6.77 7.89 -11.59 -0.09 6.68 16 15 O -0.52 -7.88 16.48 5.50 0.09 -7.79 16 16 N -0.71 -6.68 5.55 -60.73 -0.34 -7.02 16 17 C 0.12 0.81 5.67 -4.04 -0.02 0.78 16 18 C -0.15 -0.61 5.44 -26.73 -0.15 -0.75 16 19 C 0.13 0.58 4.89 -4.05 -0.02 0.56 16 20 N -0.73 -4.54 5.73 -60.43 -0.35 -4.89 16 21 C 0.40 3.30 7.65 -155.02 -1.19 2.11 16 22 C -0.24 -1.65 9.33 -39.22 -0.37 -2.02 16 23 C -0.03 -0.20 10.17 -39.32 -0.40 -0.60 16 24 C -0.24 -1.40 10.10 -39.42 -0.40 -1.80 16 25 C 0.15 1.04 11.17 -17.57 -0.20 0.84 16 26 N -0.55 -5.00 10.39 -12.44 -0.13 -5.13 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 29 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.41 6.30 7.94 -40.82 -0.32 5.98 16 33 H 0.41 3.47 7.94 -40.82 -0.32 3.15 16 34 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.28 7.93 -51.93 -0.41 -0.13 16 39 H 0.07 0.28 7.93 -51.93 -0.41 -0.13 16 40 H 0.41 2.36 8.60 -40.82 -0.35 2.01 16 41 H 0.13 0.68 6.71 -52.49 -0.35 0.33 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -33.99 378.60 -8.98 -42.97 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.33 Total: 4.66 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.49 Total: 2.55 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.38 Total: -55.08 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.99 -8.98 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321648862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.677 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds