Wall clock time and date at job start Tue Mar 31 2020 12:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99794 * 2 1 4 4 H 1.48499 * 109.46851 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.46860 * 30.00276 * 3 2 1 6 6 H 1.48506 * 109.46663 * 149.99990 * 3 2 1 7 7 C 1.37877 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00241 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47235 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46936 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99764 * 180.02562 * 11 10 9 13 13 O 1.21356 * 120.00234 * 0.02562 * 12 11 10 14 14 C 1.49452 * 120.00218 * 180.02562 * 12 11 10 15 15 O 1.21346 * 119.99680 * 359.97438 * 14 12 11 16 16 N 1.34772 * 120.00218 * 179.97438 * 14 12 11 17 17 C 1.46498 * 120.00144 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47521 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.47724 * 179.97438 * 18 17 16 20 20 N 1.46489 * 109.47486 * 180.02562 * 19 18 17 21 21 C 1.39001 * 120.00245 * 180.02562 * 20 19 18 22 22 C 1.39146 * 119.70404 * 359.97438 * 21 20 19 23 23 C 1.38295 * 119.09401 * 179.97438 * 22 21 20 24 24 C 1.38884 * 118.51011 * 0.02562 * 23 22 21 25 25 C 1.38022 * 119.32992 * 0.27628 * 24 23 22 26 26 N 1.31980 * 120.85123 * 359.44533 * 25 24 23 27 27 H 0.96996 * 120.00165 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46695 * 60.00431 * 9 7 2 29 29 H 1.08994 * 109.47365 * 300.00539 * 9 7 2 30 30 H 1.09002 * 109.46447 * 60.00254 * 10 9 7 31 31 H 1.08994 * 109.47519 * 300.00610 * 10 9 7 32 32 H 0.97003 * 120.00302 * 0.02562 * 11 10 9 33 33 H 0.97003 * 119.99934 * 0.02562 * 16 14 12 34 34 H 1.09007 * 109.47126 * 60.00102 * 17 16 14 35 35 H 1.08996 * 109.47888 * 300.00497 * 17 16 14 36 36 H 1.09005 * 109.47052 * 60.00408 * 18 17 16 37 37 H 1.08994 * 109.47420 * 300.00749 * 18 17 16 38 38 H 1.09005 * 109.46498 * 60.00099 * 19 18 17 39 39 H 1.08994 * 109.47308 * 300.00848 * 19 18 17 40 40 H 0.97003 * 119.99877 * 0.02562 * 20 19 18 41 41 H 1.08000 * 120.44826 * 0.02676 * 22 21 20 42 42 H 1.08000 * 120.74269 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.33299 * 179.97438 * 24 23 22 44 44 H 1.07989 * 119.57332 * 179.70393 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 7 5.4866 -2.6364 0.0002 12 6 6.1605 -3.8036 0.0006 13 8 5.5537 -4.8546 0.0015 14 6 7.6550 -3.8036 0.0000 15 8 8.2617 -2.7527 -0.0014 16 7 8.3289 -4.9708 0.0009 17 6 9.7938 -4.9708 -0.0003 18 6 10.3039 -6.4132 0.0018 19 6 11.8339 -6.4133 -0.0001 20 7 12.3223 -7.7944 0.0012 21 6 13.6889 -8.0484 0.0005 22 6 14.5876 -6.9861 -0.0022 23 6 15.9445 -7.2533 -0.0024 24 6 16.3591 -8.5788 -0.0005 25 6 15.4126 -9.5833 -0.0043 26 7 14.1238 -9.2989 0.0013 27 1 -0.4850 0.8400 -0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8745 -0.6807 -0.8904 30 1 3.6579 -3.1512 -0.8880 31 1 3.6586 -3.1494 0.8919 32 1 5.9716 -1.7964 -0.0009 33 1 7.8439 -5.8108 0.0016 34 1 10.1579 -4.4558 0.8888 35 1 10.1566 -4.4580 -0.8911 36 1 9.9399 -6.9286 -0.8871 37 1 9.9413 -6.9256 0.8928 38 1 12.1983 -5.8978 0.8885 39 1 12.1962 -5.9010 -0.8914 40 1 11.6919 -8.5317 0.0027 41 1 14.2304 -5.9669 -0.0031 42 1 16.6655 -6.4493 -0.0040 43 1 17.4116 -8.8211 -0.0010 44 1 15.7306 -10.6153 -0.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321648862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:33 Heat of formation + Delta-G solvation = -66.394822 kcal Electronic energy + Delta-G solvation = -24352.907384 eV Core-core repulsion = 20496.830835 eV Total energy + Delta-G solvation = -3856.076549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70286 -41.02041 -39.70040 -37.84378 -36.93812 -36.01557 -34.79856 -33.39293 -32.71449 -32.12527 -30.13997 -27.89409 -26.61690 -24.86853 -24.19453 -23.05672 -22.63444 -22.57205 -21.38312 -19.58870 -19.02077 -18.48491 -17.98826 -17.57368 -17.34045 -16.75675 -16.68218 -16.42331 -16.19885 -16.11929 -15.82346 -15.32803 -15.16177 -15.09487 -14.80866 -14.60507 -14.55204 -13.83721 -13.82257 -13.39442 -13.10115 -13.06996 -12.91594 -12.76026 -12.44200 -12.27156 -12.22596 -12.19449 -11.78262 -11.51286 -11.13064 -10.79177 -10.73457 -10.63805 -10.35869 -10.35398 -10.22933 -8.63813 -8.30333 -6.37305 0.31790 0.40562 0.58256 1.28458 1.39797 1.41414 1.52531 2.11840 2.17523 2.36388 2.67942 3.04445 3.05143 3.42136 3.77860 3.84445 3.94716 3.95160 4.09435 4.26376 4.29542 4.38840 4.43013 4.51558 4.53696 4.54059 4.67817 4.72352 4.90936 4.98496 5.02323 5.06491 5.17100 5.18665 5.29741 5.37110 5.45642 5.58679 5.71207 5.90227 6.10924 6.20356 6.34876 6.61604 6.67931 6.74046 6.92713 7.27549 7.27590 8.85997 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.001452 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.933823 B =19281.636924 C =19842.217978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.550 6.550 14 C 0.516 3.484 15 O -0.539 6.539 16 N -0.688 5.688 17 C 0.120 3.880 18 C -0.132 4.132 19 C 0.134 3.866 20 N -0.727 5.727 21 C 0.382 3.618 22 C -0.251 4.251 23 C -0.040 4.040 24 C -0.239 4.239 25 C 0.130 3.870 26 N -0.579 5.579 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.420 0.580 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.405 0.595 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.971 -14.821 0.008 38.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.279 3.721 13 O -0.429 6.429 14 C 0.296 3.704 15 O -0.416 6.416 16 N -0.342 5.342 17 C -0.003 4.003 18 C -0.170 4.170 19 C 0.010 3.990 20 N -0.360 5.360 21 C 0.146 3.854 22 C -0.276 4.276 23 C -0.066 4.066 24 C -0.262 4.262 25 C -0.026 4.026 26 N -0.298 5.298 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.258 0.742 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.241 0.759 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 35.163 -15.167 0.016 38.295 hybrid contribution -0.249 0.930 -0.023 0.963 sum 34.915 -14.237 -0.008 37.706 Atomic orbital electron populations 1.70053 1.08434 1.28392 1.51913 1.25979 0.95594 1.03554 0.93718 0.85630 0.79652 0.77888 0.79300 1.19090 1.21171 1.16380 1.21214 0.91246 0.93577 1.51544 0.94610 1.19692 0.94724 0.92920 0.98163 1.21277 0.76633 0.98930 1.01306 1.45983 1.08204 1.08999 1.70809 1.20409 0.88999 0.84443 0.78203 1.90744 1.70524 1.31665 1.49952 1.19853 0.87550 0.84996 0.77998 1.90760 1.69815 1.31805 1.49258 1.45702 1.08388 1.08317 1.71761 1.21461 0.77177 0.97853 1.03809 1.21816 0.94638 0.95543 1.04984 1.21262 0.93154 0.81872 1.02733 1.44491 1.02324 1.08472 1.80675 1.18662 0.86284 0.89474 0.90998 1.21678 0.94055 0.99647 1.12181 1.21737 0.95358 0.97770 0.91703 1.22140 1.02012 0.93473 1.08574 1.22831 0.86638 1.01093 0.92067 1.67152 1.19643 1.20925 1.22044 0.92313 0.94600 0.94724 0.92257 0.92248 0.74536 0.74198 0.90150 0.90140 0.89427 0.89422 0.90769 0.90769 0.75907 0.83731 0.82660 0.82915 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16 2 C 0.01 0.52 5.47 84.66 0.46 0.98 16 3 Si 0.95 42.35 27.47 68.60 1.88 44.23 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 7 C -0.54 -30.04 9.66 25.60 0.25 -29.79 16 8 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 9 C -0.02 -0.76 4.16 29.85 0.12 -0.63 16 10 C 0.14 5.51 5.61 86.38 0.48 5.99 16 11 N -0.69 -22.03 5.55 -464.41 -2.58 -24.61 16 12 C 0.50 15.15 7.89 87.27 0.69 15.84 16 13 O -0.55 -19.07 16.48 -3.26 -0.05 -19.12 16 14 C 0.52 12.77 7.89 87.27 0.69 13.46 16 15 O -0.54 -15.24 16.48 -3.23 -0.05 -15.29 16 16 N -0.69 -11.56 5.55 -464.43 -2.58 -14.14 16 17 C 0.12 1.30 5.67 86.38 0.49 1.79 16 18 C -0.13 -0.81 5.44 30.59 0.17 -0.64 16 19 C 0.13 0.93 4.89 86.38 0.42 1.35 16 20 N -0.73 -8.36 5.73 -345.09 -1.98 -10.34 16 21 C 0.38 5.99 7.65 133.07 1.02 7.01 16 22 C -0.25 -3.11 9.33 22.50 0.21 -2.90 16 23 C -0.04 -0.41 10.17 22.44 0.23 -0.18 16 24 C -0.24 -2.45 10.10 22.37 0.23 -2.22 16 25 C 0.13 1.74 11.17 84.62 0.95 2.68 16 26 N -0.58 -10.43 10.39 -193.26 -2.01 -12.44 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 29 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.42 12.03 7.94 -92.71 -0.74 11.29 16 33 H 0.42 6.19 7.94 -92.71 -0.74 5.45 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.45 7.93 -2.38 -0.02 0.44 16 39 H 0.07 0.45 7.93 -2.39 -0.02 0.43 16 40 H 0.41 4.44 8.60 -92.71 -0.80 3.64 16 41 H 0.14 1.25 6.71 -2.91 -0.02 1.23 16 42 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 44 H 0.17 1.38 8.06 -2.92 -0.02 1.35 16 Total: -1.00 -74.30 378.60 -1.94 -76.24 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -1.28 Total: 20.83 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 6.40 Total: 12.73 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -8.84 Total: -119.61 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.11 Total: -34.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -74.30 -1.94 -76.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321648862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.843 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds