Wall clock time and date at job start Tue Mar 31 2020 12:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.46978 * 299.99801 * 3 2 1 6 6 H 1.48503 * 109.46712 * 59.99605 * 3 2 1 7 7 C 1.37879 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.53071 * 109.44365 * 59.78883 * 9 7 2 11 11 C 1.53192 * 109.29669 * 181.24072 * 10 9 7 12 12 N 1.46926 * 108.89029 * 305.57921 * 11 10 9 13 13 C 1.34779 * 120.62965 * 233.55576 * 12 11 10 14 14 O 1.21345 * 119.99804 * 353.07380 * 13 12 11 15 15 C 1.49450 * 119.99959 * 173.06654 * 13 12 11 16 16 O 1.21355 * 119.99841 * 353.34180 * 15 13 12 17 17 N 1.34768 * 119.99962 * 173.33912 * 15 13 12 18 18 C 1.46504 * 120.00123 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47173 * 179.97438 * 18 17 15 20 20 N 1.46505 * 109.46715 * 179.97438 * 19 18 17 21 21 C 1.34950 * 126.03113 * 125.00199 * 20 19 18 22 22 C 1.35308 * 107.74400 * 179.97438 * 21 20 19 23 23 C 1.39864 * 107.92234 * 0.02562 * 22 21 20 24 24 N 1.30840 * 108.20406 * 359.73714 * 23 22 21 25 25 C 1.46927 * 118.74163 * 53.53736 * 12 11 10 26 26 C 1.53039 * 109.45899 * 179.97438 * 9 7 2 27 27 H 0.97002 * 119.99706 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.45335 * 299.96658 * 9 7 2 29 29 H 1.08998 * 109.39068 * 61.36173 * 10 9 7 30 30 H 1.09008 * 109.62009 * 301.25665 * 10 9 7 31 31 H 1.08995 * 109.58780 * 185.72372 * 11 10 9 32 32 H 1.09003 * 109.58422 * 65.43621 * 11 10 9 33 33 H 0.96997 * 120.00607 * 0.02562 * 17 15 13 34 34 H 1.09001 * 109.47155 * 299.99706 * 18 17 15 35 35 H 1.08998 * 109.47111 * 59.99642 * 18 17 15 36 36 H 1.08993 * 109.47263 * 299.99967 * 19 18 17 37 37 H 1.09009 * 109.46913 * 60.00211 * 19 18 17 38 38 H 1.08001 * 126.12758 * 359.95533 * 21 20 19 39 39 H 1.08000 * 126.03897 * 179.97438 * 22 21 20 40 40 H 1.08005 * 125.90210 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.58946 * 66.17446 * 25 12 11 42 42 H 1.08998 * 109.59100 * 186.46270 * 25 12 11 43 43 H 1.08999 * 109.49875 * 58.67382 * 26 9 7 44 44 H 1.09001 * 109.52161 * 298.58857 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3677 -2.5776 -1.2472 11 6 -0.4199 -3.8914 -1.2281 12 7 0.5226 -5.0089 -1.0815 13 6 0.5126 -6.0349 -1.9555 14 8 -0.3580 -6.1059 -2.7977 15 6 1.5739 -7.0849 -1.8874 16 8 2.5107 -6.9523 -1.1274 17 7 1.4906 -8.1789 -2.6699 18 6 2.5307 -9.2086 -2.6028 19 6 2.1981 -10.3342 -3.5843 20 7 3.2385 -11.3635 -3.5175 21 6 3.0417 -12.6767 -3.2772 22 6 4.2500 -13.2855 -3.2986 23 6 5.2184 -12.3109 -3.5605 24 7 4.6127 -11.1592 -3.6971 25 6 1.4765 -4.9867 0.0358 26 6 2.2457 -3.6622 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5567 0.8908 29 1 0.9953 -2.5425 -2.1376 30 1 -0.3266 -1.7373 -1.2575 31 1 -0.9726 -3.9997 -2.1613 32 1 -1.1160 -3.8880 -0.3893 33 1 0.7420 -8.2848 -3.2776 34 1 3.4935 -8.7700 -2.8650 35 1 2.5783 -9.6114 -1.5911 36 1 1.2354 -10.7726 -3.3217 37 1 2.1502 -9.9316 -4.5962 38 1 2.0903 -13.1559 -3.0993 39 1 4.4341 -14.3378 -3.1406 40 1 6.2820 -12.4804 -3.6410 41 1 0.9367 -5.0710 0.9789 42 1 2.1735 -5.8190 -0.0620 43 1 2.8881 -3.5915 0.8782 44 1 2.8561 -3.6195 -0.9016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321965552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:23 Heat of formation + Delta-G solvation = 28.692503 kcal Electronic energy + Delta-G solvation = -26326.504199 eV Core-core repulsion = 22474.550947 eV Total energy + Delta-G solvation = -3851.953253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50426 -40.76449 -38.62332 -37.09548 -36.05290 -33.67101 -33.17181 -31.09308 -30.55064 -30.21971 -29.00158 -26.58876 -25.05706 -23.51073 -22.59101 -21.88751 -21.43530 -21.13317 -20.33169 -18.89672 -17.77483 -17.34594 -16.82024 -16.45049 -16.26197 -15.61740 -15.45878 -15.07159 -14.58487 -14.55097 -14.46323 -14.06963 -13.81731 -13.46687 -13.19732 -13.12717 -12.80203 -12.75705 -12.62340 -12.28205 -12.12290 -11.86208 -11.21915 -11.02335 -10.99283 -10.92198 -10.59495 -10.35553 -10.08917 -9.83391 -9.59067 -9.56589 -9.54289 -9.00166 -8.95140 -8.62533 -8.36246 -8.12308 -6.01456 -4.07489 1.49304 1.50606 1.87420 2.51010 2.56303 3.28509 3.32334 3.36967 3.41239 3.66831 3.95909 4.22270 4.41217 4.42595 4.46381 4.62220 4.68696 5.10021 5.26273 5.28144 5.38896 5.45039 5.60725 5.64652 5.82590 5.89039 5.98393 6.15465 6.27205 6.31250 6.35276 6.54283 6.58475 6.67303 6.79327 6.90301 7.01264 7.15489 7.30302 7.32743 7.66372 7.70632 7.80108 7.93646 8.05820 8.17876 8.42238 8.96335 9.57555 11.04070 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028071 B = 0.002222 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.240842 B =12597.330972 C =13202.876162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.105 3.895 12 N -0.558 5.558 13 C 0.500 3.500 14 O -0.541 6.541 15 C 0.515 3.485 16 O -0.499 6.499 17 N -0.705 5.705 18 C 0.108 3.892 19 C 0.124 3.876 20 N -0.373 5.373 21 C 0.055 3.945 22 C -0.274 4.274 23 C 0.046 3.954 24 N -0.291 5.291 25 C 0.047 3.953 26 C -0.118 4.118 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.413 0.587 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.184 0.816 41 H 0.058 0.942 42 H 0.141 0.859 43 H 0.061 0.939 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -25.373 -6.179 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.026 3.974 10 C -0.161 4.161 11 C -0.016 4.016 12 N -0.289 5.289 13 C 0.281 3.719 14 O -0.421 6.421 15 C 0.297 3.703 16 O -0.375 6.375 17 N -0.360 5.360 18 C -0.017 4.017 19 C 0.002 3.998 20 N -0.156 5.156 21 C -0.090 4.090 22 C -0.303 4.303 23 C -0.140 4.140 24 N -0.112 5.112 25 C -0.073 4.073 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.192 0.808 39 H 0.166 0.834 40 H 0.201 0.799 41 H 0.076 0.924 42 H 0.158 0.842 43 H 0.080 0.920 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.411 -23.804 -6.280 24.736 hybrid contribution -0.058 0.075 -0.067 0.117 sum 2.352 -23.728 -6.347 24.675 Atomic orbital electron populations 1.69846 1.05853 1.26345 1.51069 1.24980 0.94886 0.99110 0.95135 0.86550 0.80190 0.83827 0.77527 1.19819 1.21078 1.21072 1.21250 0.93001 0.90532 1.50033 0.92599 1.18702 0.92760 0.91997 0.93934 1.22047 1.00128 0.94288 0.99599 1.22104 0.91481 0.86276 1.01770 1.48231 1.35086 1.19326 1.26294 1.19719 0.85566 0.83438 0.83138 1.90706 1.37368 1.76626 1.37377 1.20526 0.86884 0.82536 0.80354 1.90397 1.34223 1.75997 1.36853 1.45569 1.27267 1.20171 1.43011 1.21595 0.92513 0.87614 0.99964 1.21778 0.88420 0.87986 1.01597 1.48489 1.05749 1.06207 1.55146 1.22616 1.00753 0.84452 1.01199 1.21548 0.91584 1.01207 1.16008 1.23968 1.00626 0.90125 0.99298 1.77443 0.86756 1.23429 1.23577 1.23309 0.92983 1.03859 0.87194 1.21919 0.98760 0.93870 1.01034 0.93036 0.95486 0.94261 0.87501 0.90426 0.91579 0.75043 0.89251 0.90310 0.87654 0.88675 0.80812 0.83408 0.79892 0.92354 0.84244 0.92042 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.30 55.43 0.63 -24.30 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.09 2.06 -91.71 -0.19 0.90 16 10 C -0.12 -2.84 5.16 -26.60 -0.14 -2.97 16 11 C 0.10 2.07 6.41 -3.71 -0.02 2.04 16 12 N -0.56 -10.36 2.97 -173.27 -0.52 -10.87 16 13 C 0.50 8.54 7.74 -11.58 -0.09 8.45 16 14 O -0.54 -9.79 15.94 5.50 0.09 -9.70 16 15 C 0.51 7.49 7.78 -11.59 -0.09 7.40 16 16 O -0.50 -8.24 13.10 5.49 0.07 -8.17 16 17 N -0.71 -7.28 5.55 -60.73 -0.34 -7.62 16 18 C 0.11 0.96 5.86 -4.04 -0.02 0.94 16 19 C 0.12 0.76 6.62 -4.04 -0.03 0.74 16 20 N -0.37 -3.08 3.68 -61.36 -0.23 -3.31 16 21 C 0.06 0.36 11.45 -17.22 -0.20 0.16 16 22 C -0.27 -1.88 10.80 -40.02 -0.43 -2.31 16 23 C 0.05 0.38 12.02 -17.37 -0.21 0.17 16 24 N -0.29 -3.08 12.42 30.62 0.38 -2.70 16 25 C 0.05 0.86 6.27 -3.71 -0.02 0.84 16 26 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 2.74 6.03 -51.92 -0.31 2.42 16 31 H 0.08 1.50 7.05 -51.93 -0.37 1.13 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.41 3.48 7.96 -40.82 -0.33 3.15 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.11 0.34 8.07 -51.93 -0.42 -0.08 16 37 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.17 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.18 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.14 2.47 3.78 -56.75 -0.21 2.25 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -32.66 363.58 -7.68 -40.34 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.25 Total: 3.51 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.97 Total: 1.14 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.07 Total: -48.79 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.16 Total: -17.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.66 -7.68 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321965552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.029 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds